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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0731200 |
| Transcript ID | LotjaGi1g1v0731200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Exosome complex component RRP4; TAIR: AT1G03360.1 ribosomal RNA processing 4; Swiss-Prot: sp|Q9ZVT7|RRP4_ARATH Exosome complex component RRP4 homolog; TrEMBL-Plants: tr|B7FL19|B7FL19_MEDTR Ribosomal RNA processing protein; Found in the gene: LotjaGi1g1v0731200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130291250..130294078) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGAGGGATACAGTTAACATTGAGCCAAACTCAGAAAATTCGTCTTCAAAAGGCTCTGGAGCAGCTGGAGTCTCTGTC ATCGAAGGTGAATTCTGATGCTTCTGTGACCATTGCTGACTCTATCCCTGTGAACCATGAAGATGGCGTCCTTAAGGGAC ATGGAACTGGCGACCTCAATGGTGAAGTCGTTGCCACAGTCTGCGGTGTTGTTGAGCGTGTTAACAAGCTTGTCTATGTC CGCTCCTTGCGCTCTAGGTAGCCTTCCTTTTTAACTAGTGTTCCTATTTCCATTATTATGTTTATTAATGCAATATAGTA AATTGTAGGTACAAACCTGAGGTTGGTGACATCATTATAGGGCGTGTTATTGAGGTACACTCTCATAGTATCAACAGTTT TGCTGCGTTTATTTGAAAATGTACAGTGCTTATTTCAATTATTTCACTTTCATCATTTTACTGATTGTTGCGCAGGTTGC TCAGAAGCGTTGGAGATTGGAGATAAATTACAGTCAAGATGCATTTTTGATGCTTTCTTCTATGAATATGCCTGATGGTG TCCAGGTATTTTCATGACTCCTGTTTTGGATATCTTGTAATCTTATATCAGAAGGGCCATCTGTTATCTGTATAGCTTGC GCACCTCTCTTTTGGAAACTACAGAAATGTTTTTTTATAAGGAAAAATAAGAACACTTTATTTAGTAAAACATGTTAATT TTTTTTTTACGGCATTTAGACTTTTCTTTAAAAAATCTGTTTGTGTTTTTCTCAGAAGCTAGAGAAAGAACATTCAGAAA AATTTATGCTAAAAGATACATCATCAAAGCACTTTCCAAAGCTTATGTAAATGTACACTTTGTAGATGTCAATTTAACTA ATTTGAGACAACTATGATAGAATTGAAGTATTGATGGGTTTTATTCTGTCTCAAGTTGGTGACAATTAGTGTCAAGACAT CAGGCTGATTAGAAGCAGTGATGAACTGGAAACAGATATGTATTTTGTAGTTTCTTTCTTTAAAGTATTACTTCCAGTTA TTGGTAATATCTGCTGTCTAGGTTATAAGCAGTTCATAGTGAGTATTTTATTTGTTGATTTTTAGATTAGTGGTGAGTTG ATTCTAGGATATCTTTGCACTTGTAGATGATGGAATAGTGCCTTGGGATTTTTTTTTGTAATTTTGGGCAGATCTTAGGT GTAATCGTAGATGATGGGATAATGCTGGTATTTTTCAGGTTTTTAGTGCAATCTGAACTGATACTATATGTGTGTTTAGA AAATTCAAGTAAAACCATGTATTCTCAGACTCACGTCAAATTGAAGCAATAAATAGTTGCGTTTAAAAGGATATAATTGA TTCTAGTAGTACCCAACTTGAAACCAGAACTGTATGTGGGTTGGACTGCAACAGTTATTTATGACCTGAATTGTGTATTT GGTCTGGGCTAACATTTTGGGGTACATGTATGGCTTTCCTTATGAAGTGGATAACCTCATGGTGTAATTTTTTTAAGCTT GTATGAAGAAACCTTAATTCTGTAAAGAAATAATGTTAAAAGACATCAGTAAATGAGGTCAGGGGTACAAATGCTAATTG CAAAACAATTATGGCTTATGACTTATCAAGCAGCTAATTTGTTCTAAGTTTTGATAAACATATATTTTATCATGCACAAA AAGTTGTACTCCATTGGGTTGCTTGCCATTTTGTTTTCATCTTTACCATATCATACTGTTGACTTTATGCCCCAATTAAG GTTGATACCCCTCATTTAAACTAATTTTTCCACTTCTAGAGGCGGAGGACATCTGTAGATGAGCTAAATATGCGCTGTAT TTTCGAGGAGAAGGATGTTGTTTGTGTAAGTCTAACTCTGTCTTTTATACTAAAATTTACTTACACTGGATGAAAAAGAG TATCGGTTGATTAGTGTCCTTAACTATGTACATTTGCCTCAGGCCGAAGTTCGTGGTTTTCAGCATGATGGCTTACATCT TCAAGCAAGAAGTAAAAAATATGGAAAGGTTTGTAGTCTTCAAAATTGAAAACCTTGTAAATCATATTATAAATTTTTTC ACTCAAAAAATTATAGCAAGTTGCATAAAATAGGAGACAGTACAAAATTAAAGTTGTGTGAGATTAGGTAATGTTTGCTT ATGGATATAAAACTACACAGCTTCCAGCAATTGTTTATTATTCAAATGTGATGCAAGCATCCTGGAATGTAGGGGTAAAT ACAATTTTTGTTCCCATGGTACTTATAATGATTTCTACATGGGATGTAATTTATTCTGGTTGCTTAAATTTATTTGGATC ATATTCTTGAAGTCTTATGCTGTTACTGATGGCTCTCAGTTGTATGACAGCTTAATAGCGGTCAACTGCTTACAGTCCCA CCATATTTAGTGAAGAGACAAAAGCTACATTTCCATCATCTAGAGCAGTATGGTGTTGATTTGATACTTGGTTGTAATGG ATTCATATGGGTGGGGGAACATGTTGAAGCTAGAGATGAGATGGTAGAAGATCAAGTGAACCAGTCTGATCCCCAAGTTC CATCCCCCAACAAAAATTCCAGGGATCTTGAAGAACAAGAGAAAAACTATACAGCATTGGAGACAAGAAAATATATATGC CGGGCTGCTAATGCTGTTAGAGTATTGTCGACCTTGGGCTTCGTTATTACTGTCGAAATCATCAAAGGAATTATTGATCT AAGCCTTTCTCTAAATCTTGATATACACGACATGCTTGGTTCTGAGTTTGGTGTTTTGGTGGCTGAAAGAGAGGTCGAAA GGAGAAGCTCCAGTAAAAGGAAACGGTAG
CDS sequence (LotjaGi1g1v0731200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGGGATACAGTTAACATTGAGCCAAACTCAGAAAATTCGTCTTCAAAAGGCTCTGGAGCAGCTGGAGTCTCTGTC ATCGAAGGTGAATTCTGATGCTTCTGTGACCATTGCTGACTCTATCCCTGTGAACCATGAAGATGGCGTCCTTAAGGGAC ATGGAACTGGCGACCTCAATGGTGAAGTCGTTGCCACAGTCTGCGGTGTTGTTGAGCGTGTTAACAAGCTTGTCTATGTC CGCTCCTTGCGCTCTAGGTACAAACCTGAGGTTGGTGACATCATTATAGGGCGTGTTATTGAGGTTGCTCAGAAGCGTTG GAGATTGGAGATAAATTACAGTCAAGATGCATTTTTGATGCTTTCTTCTATGAATATGCCTGATGGTGTCCAGGCGGAGG ACATCTGTAGATGA
Protein sequence (LotjaGi1g1v0731200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRGIQLTLSQTQKIRLQKALEQLESLSSKVNSDASVTIADSIPVNHEDGVLKGHGTGDLNGEVVATVCGVVERVNKLVYV RSLRSRYKPEVGDIIIGRVIEVAQKRWRLEINYSQDAFLMLSSMNMPDGVQAEDICR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 131 | 131 | 9.8E-58 | – | |
| PANTHER | 1 | 131 | 131 | 9.8E-58 | ||
| Coils | 9 | 29 | 21 | - | – | |
| Gene3D | 26 | 86 | 61 | 5.2E-18 | – | |
| SUPERFAMILY | 44 | 82 | 39 | 2.88E-6 | – | |
| SUPERFAMILY | 85 | 132 | 48 | 9.53E-12 | ||
| Gene3D | 87 | 136 | 50 | 7.8E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Exosome (RNase complex) | A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0731200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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