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LotjaGi1g1v0733500.1

Overview

Field Value
Gene ID LotjaGi1g1v0733500
Transcript ID LotjaGi1g1v0733500.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|V7C741|V7C741_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0733500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:130709420..130716872) extracted from Lotus japonicus Gifu genome v1.2.

CCTCGGTTCCCAGCAAGCTTCTTCATCCATCTCTTTTATGGCCAAGCCTCGGCAAGGAGAAGGAGAAGGTGGCAGTGAGC ATTGGGTTAGAAATTAAAATATGGGTAATCATGCCTAAACCCAAAAAAGTCCCATTCAGCCCAATTCAACGGGTCAACAT GTTGACTAAATGAAGGCCGCAGGTTGTAGTTGTACAAGTACAAGTAACTAACAAACTAGCTTCACAAGGAAGGAAAAGTG GAACTAGTTAATTAAAAGAAAAAGAAAAAGAAAACCCTTGTTGCGAAGCATGAAGCTCCTCCTCCGTCTTTCATTCAACG GCGTGTTGCGGCGGCCGAGCGTTAACACTTACAACGTCGTAATGATCCGCGGCTTCTCTGGGAACTCAGAATCAGAATCA GAATCGAAGGCTTACGCGGCTCGGATTCTATGGAGATGCAGCCAGGAGCGTGTAGATGAGGCTCATAAGGTTTTGAGTCA AATGATTGATACTGGGTTTTCTCCCTCGGTTGATACATACAACCACATTATTCATGGCTATTGCCGTGATAACAGGTTTC ATGAGGCTCTGGGGATTTTGAGTCAAATGATTGATACTGGGGTTTCTCCCTCGGTTGCTACATACAACCACATCATTCAT GGCTATTGCGCTCATAAGAGGGTTCATGAGGCTCTGGGGATTTTGAGAACCATGCCTCACACACCTGATGCTCTTACTTA TGACATTATAATTCATCAGTTTTGCAAACTCCACGACCTCGACAAGGCCTTTCAAATCAAGGCGGAGATGCTCAACAATG GCATCTTGCCTAATCTTTACACGTATGAGACGCTTATTCACGCCCTGTGCCCGCTTCAAAGACTGTCTCAAGCCTTTCAT CTCTTCTGCGAGATGCTGCGCAGGGGTCTGTTGCCGCGTGACCGCACTTATAATACTTTGATCAATGCTTATTGTCTTCA AGGACAATTCAGTAAGGCTTTTCAAATCCATCATCAACTGTTACTACACAATGCTGATTTTGTTTCTGCCTTTTCGCCAT CTCTTGTTACATACAATGCACTTATTCATGGCTATTGCTTTCTCGGGAGGCTTCAGGAGGCGCTGGGGATTTTGAGGGGC ATGCCTCAGATGGGATTGTCCCCTGATGGTGTTAGTTATAACCCTGTTATATCCGCGTTATGCCGAATCCGGGAGCCGGG GAAGGCCTTTGATTTGAAGTTTGAGATGGATGAAAAGAGCATCGGTCCGTTGGATGAAGACACCAATGAATCACTTATGG AACAACTGTCGGATGAGGATACTTATTCTAGTTTGATGAATGAATATTTTGCTCAAGGTAACTTGGAAAAGGCTTATCAG TTGGAAGTTGAAGTGGATCACGATCGTTACATGCTACCTTGTGTTACCATGAGTGTGTTTTTGAATGGACTTAACAAGAA AGCTAGGACAAGCGAAGCTAAGTGGATTCTTCTGCGCAAGATTTTTGATTGGTGTTCGCGATTTCCAACTTATATAATAT ATGATACCCTGATAGAGAACTGCAGTAATGATGAATTTAAGAGCGTGGTAGGGCTTGTCAAAGGCTTCAGCAAGAGGGGT TTAGTGAGTAAAGCAGCCAGAGCTCATGACACAATGCTCGAAGGGAATTATAAGCCAGATGGAGCAGTTTATAATTTATT AATATTTGATCATTGTAGATGCCTTAATGTTCGTAAGGCCTATAATATGTACATGGAGATGGTGCATTATGGTTTTGTTC CTCATATGTTCTCTGCACTTGCTCTTATTAAGGCTCTACATTATTGCGGAAGGCAGAATGAGATGAGTTGGGTAATTCAA AACACATTGAGGAGCTGTAATCTCAATGAGTTTGAGCTACCTAAAGTACTTAATGAAATTGACTTCCCGAAATGTAAAAT TAATGCTCTTTTGGATGTACTAGCTGAAATTGCCATGGATGGCCTGTTACTTGATGGTGGAAAGTGTTCATATGCCTCAG CAAGAACCTAATATCTTCGGTTTTGCTTGTTGAACTCTGTTACCATAAACCTTGAGCTGACCCTTCCGGCTTGCATCTAG CTTGCTTTGGCTTGGAGACTTGCAACATGGAAAGCTCTCCCTTGCTAGGAAAGCAGATTATCATCTTTAAGTGGAACTCT ACGGCTATCAAAGACCACCTTCTAGACCAGGTCATTTAGATCATTATTTAAATTGTCAAGTATGAAGTAACGTGCTTTCA ATCATAAGTAGAAATTGTTTTCTCTGTGTTTTTTAAATCAAATTCTTACTGTTTATAATTTACTTTGAGGTTGTTGGGAA TCATGTTTTATGAATTTCAATAATTTTGAGTGAGGGTTGCTTAAATCAAGAAAGTATTTATCTGACATGATCTGCCATTT ATTATTTCACTTGAATGATAAAAGTTGAATCTGTTCTCCATAAACTCCTGGGGTCCCAAGCTTAGAGGGTAAATCTTTAA GCTCAAGTCCAGGATTAGCGTTAGTGGAGATGTATTTCTCAAGTTCTTTCTGTCTTCTTATAGACTATTTTCTTGTCTCT TGGGTTGTTTGGTGTTTCTCTAACATTATGTGTCTTATTACATGTTAAATGCGGTAATAATTGCTCTTTGGAGGTTACAG GTGGCTATTTACCATTGGGAGTTATTGCGCTTATACCCTTGGGTTCGCAAGGGGTAACTTGAACTCCCAACAATCCATAT CCTTTCGAGAACCCTCTGATTAGCCCCCTTTTCTTTTTACCAACAAAGTGTTGGTCTAGTGGTAAGCAAGCTAGGCCCCC GTAAGGACTCAAGTTCGATCCATGGGAAATATATTTGTTGGGAAGGATAGCTACCGTTGGAAAACGGGTAGGAACATCCG ACCAAGACTTTTTTTTTTTTTGTTACAACTTCTCATATCTAAAGTCAATAAGCGGATTAGAGAAGATATTGGAATGACGC CTATCGTGGAAAAGTTGACGGAAAATCTCATTATCAATAGCATCCCTCATAACTTAGTTTTTGATCGAGCTCAATGGCTT AGTGTGATCCATATGGCCGACCTCACTTGGTGGGATAAGGCTTTTGTTGTTGCTCTCATTACTAAAGTAATACTATTATT GGATTGTTTATTTTTCATAATAATAATAACAAATGATATTATCATCATAAAATACATTACATTAAAATATTGTCTAACAA AATTTTGACGGGTGCATCGCACCAGTAAATCTACTAGCAAATAGAAAGAGTGGTAATATCTAGATGTTTCATTCAATCTT TTGAATATTTTAAGCAGCTGCGAAAATGAAAAACTTATTTTAACACTTCAATATCACCTCCACCATAGAGATTAAGAAAT GAGAGATATAATTGTTGATGTGATAGAAAAAGAAAATGAGTGAAAAATGAGATGAGAGAGAAACAGGAGTGTGAATTGAA TCAAAACTTGTATAAAAATCCTAATAAGCTGGACCAAACTTTTCCAATGTGATCCAAGTACTCGAGTATCCCTTTTTAAT TAATAATCAATAATGAAAAAAACACGTGTCAGCTCGTCGTCATATTGCCACGAGTACAGGGTTATTATTTTTGATTCTGT AGATTTTTTTCAACGTACACCCACTCACGTAACGTTACATATTTCACGGTGATACCTGACGGATGTAGGTGACATTCGAT CGCAGCTCACACTCTCTCTGATCGTTTCATTCACACGCGCACCAATGCCAAGTGCCTGTGAATTAATCCTGATCAGGTTG TCTTTGCAAAAATATTATTATTATCATTATTATTTACCTAATTATTGGAAAGTTGTAATTAAAATCATTATTTTTTTTGG AAGTCCAAATAAATATATATATATATATATATATATATTAATAAAGAGGGAATAGGACAATGGAGATCTTCAAAACAGTA TCTTTCTTCAATGGCAACTTGCTATTGCAGGTAAAAATCCCTTTGGGCTCGGTTGACTCATGTTGCGGCAAAGTCTATCT CCATACCTTACCGGCTTGTCCGGTCGCACTCGGTTGTACTTGAATCCTCTTGTTCTGTTCCTACCATTTCTCGCTTGGAT TCTCCAGAGCATGTGTTTGGTTCTGCTTCGCATGCGTGTTGAAGTTCTTCTCTGCTCCTTCCTTCATCCTTCGGAAGGTA AACCCTTTTCCTCTAGTTTTTCTCTGCTTCAATATCTGTTTGGTTAATCAGAAAATCCCAACATATCAACTCTGTTGGTT TTTTTGTGTGTGTGTTTGGATTATGTTTTTTAGGACATCAAAATGAAATATTGATAAGTTAGGAATATATGAAAAAAAAC TGGCTGTAATTGGTATCTGCTGTTACCAGGATTCTCTGTTTGTGTGTGTTTGTCAAGGGAAGGGTTTATTTATTGGTCAA ATATCTGAGTTGAGGATTATGTGATGTCTATTCATGTAGTTATTCAGAATAATACCTCTTTTTTGTGATTATGACCTCAA TATTCTGATATATGAATTTTGAAGGGAAAGTCATGTGAAAAGTGTGTGATGTGTTTGTATGAATTTATGATTTATGATGT GACCACAAATACCAAAACACGAAAAATTGATATAGGTTGTGTGTAGCTAAGCTAGGTGGATATGTCACACTTTTGTCTGG GATCCCTAATCGATGCATTTATCCCATTTTTGTCTGGGATCTAATCTTGTGTCATGGATTGGGCTAATCTTGGCTTCTCT CTCTTAATAGTGAATTTGCTGATTCCTTTGTCTTTTTTTGTTTTCTTCAAACCGTAGGGAAATTATTAGAACATGACAAA GGGCAAGAAAGCTGGAAGGGCTTCAAAGGAAGTATTGAAACCAGTTGATGACTGGTTAGTTCCTATGTTTGTATATCTGC CTTTGTCCCTTTCTGTTATAGTTCCTTTATATAATTAGCTGACTTATCTCCTACTCTGTCATAGCGAGGAGTTCAGAAAG ACTTTTAATGCTGAAAATCCTAATGTGAAGGCTGGTTCAGCTGTAAGTTACATATTAAACTGTTCCGCTCTGTGTGCTGA TGTATCCTTTTTGAATATGCATCAAAGTTCTTTTTATATAACATTGATTGAAGATTGGGAAAGCTGGACTGGAGGAGAAA AATGGAAATCCTTGACTAAGGCTGTAAGCATTGCAATTCTGGAAAGCTTGGAAGGAGCTCTAGCCGTATTTTTTCTTCTC CCTGAGATCTTTGATGGGGCGTTTGCAGTTCTGATGGTTTCGTTGAGGATCTAAAGGCGTTGTCGTTGTTGGCGGCTGTC GTTGGCTTCTTCCGTTGTTTATCTTTATGTTTTTTGCTTAGTTCCTGGGTCCCTGCCGTATAGCGCTTAGTTTGGGTTTT TTTTTGGATCTTTAATCTGCTTGATTCGATTGGGTCCATGTTTGCGGGTATCGAGCGACTTGTTCCGTCGTTTTTCGATT TCAATTTGAATTTTTTCCTAGGGGCAGATGCTAGGTATTTGGATTGGTTTTAAGCATGTTTTCATGCTTCAGGGTTTTCT CGAGGTTTTTGCTATAGCGGCAGGTTTTTATCAACTTTATGTTATACCCATGTTGAGAGGGATTGTTCTCAACACTATAT ATATATATATATATATATATATATATATATATATATATATATCCTTTTGCTTTCGAAAAAAATAAATATAAGCAGGAATG TTATAAGTAAAAGTCGTTTATCTACTGTAAGAAAATGTTACTTCTACTGAATTCCACTATATCAATATATTTGCATTTAC CCATTGTATTGAAGAAGGGCTTTATTCTGTTACTTATTCTATCTCTTCTGTTTCAACTGGAAAGGAGAAAGCTCCATATG AAGCGAAGGCTGTAAAAAGGAAAGCTGAATATGAAAAACTTATTAATGCTTATAATAAACAGGTAAGCACCCTGTACTAG TTGTTCTGTTGTCTTGTGCATTGATTTTCTTGTTTATATGCTTCATATGATATAATATTTCCAGGCAAGTCCATCAGATG ATGGAGACGAGGAATCAACAAGTCCAAATCTGAAATAAATGTTGAAGAGGATGAAGCCAGGGGAACGGTAATCTCGCACT TCCCTGTTTCTTGTACTTTTATTTTGATGTTACCATGTAATAACTTTGATCATCATAGAAAAGGCTTGGAATATTGTTGA CAATTGCTACATATGGAGGTGGTTTGGTTTCTTTGGGTTCTACATCTACCTCAAATGGAAAATGTGAAGGAAAACTCTCA TAATTGACTAAATGATATTTGATGATTGCTGTTTTTTCTCATCTAACAAGCAAGGTATTTTTTTCCACTGACTGGAGTAA GGCACATAGATCAAATGATGTTTAATAAGCTGAAATTGTCAAATGATGTCAAATACGCTCAAATTGTCAAATGACGAGAA ACTAAAAAAATACTACTGAATGCACTTATTTAGTTATTTCATTTCTTTGTTCTCATTCTTGTAAAACAGGAGCTTCACAT AGCCATTCAATCACTTGCTCACATAGGAGCATCACGTGATTACAGACCTTATTTGATTACTTTTGCTCCATTTTTCATTG ACTTGTGACATAACAGAATTTGATTTTGAGGCTTATGGTTAACTTGCTTTGTCAATAACATAACTTAAAATTACTACACC AAGCACTATTAATCATTTATATGATATATTTGAACTATTTTTTTCTTGTGCTTTTGAATTTTGAATCGATCCACGATTCA AAAATTAACATCGCCATTCACTCTCAATTTGATGACTTTGGTTTCCTTACCATTTTCTGATTGTACAGGAGGACCGCCAA GATGAAGAGGAGGAGGACGAAGATGATGACTTAGATTGGTGTGCTATGAACTTCATATGATGTTTCACTGGTGGGGAAGA CTATTATATATATTGTCTATGTGTGCTATAGGCTACTTTGGATATTCATGCCGGTAGAAAATCTGTCTTCTGTTACCGGC ATGATATTTTGCCATCTACTCGAGCTTCCCTGAGTTGTTAGTTATTGTGTTTAAACTCCTTTGTATACTGTGCCTGAAAA TCTATATGTGGTGAAAATCTGTATCTGGCGAAGTACGTAGCCTACTCATCATGTACATAAGGAACATAGTATGTATGATT AACCATTTTGATGTCGCTCTAGTTGTCCAATGAAGTGGTTGAAGCAAATGCGATTCAGAAGAGAAGTTGGAATGACCTCT CATTTTTCTTGTCTTGATATATATAATACATACACTGATGTTATGGTTATCTTTTTTATTTTCTTAAGTAAAATTATCTC CACTCCTGGCACGTTGCACTTAACAAAAGGGAACAAAGACTTTAGATTTATCAAGAATTTCCTTTCCACTATCGTATAGT AGATCGATTTTTGCTTTTCCAGACTCTGGGCTAGATCAAAGATAGTTTACTGAAGCTGTGAAAAAGAATTGATAGGCAAA ATTTTATTTTCAT 

CDS sequence (LotjaGi1g1v0733500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGCTCCTCCTCCGTCTTTCATTCAACGGCGTGTTGCGGCGGCCGAGCGTTAACACTTACAACGTCGTAATGATCCG CGGCTTCTCTGGGAACTCAGAATCAGAATCAGAATCGAAGGCTTACGCGGCTCGGATTCTATGGAGATGCAGCCAGGAGC GTGTAGATGAGGCTCATAAGGTTTTGAGTCAAATGATTGATACTGGGTTTTCTCCCTCGGTTGATACATACAACCACATT ATTCATGGCTATTGCCGTGATAACAGGTTTCATGAGGCTCTGGGGATTTTGAGTCAAATGATTGATACTGGGGTTTCTCC CTCGGTTGCTACATACAACCACATCATTCATGGCTATTGCGCTCATAAGAGGGTTCATGAGGCTCTGGGGATTTTGAGAA CCATGCCTCACACACCTGATGCTCTTACTTATGACATTATAATTCATCAGTTTTGCAAACTCCACGACCTCGACAAGGCC TTTCAAATCAAGGCGGAGATGCTCAACAATGGCATCTTGCCTAATCTTTACACGTATGAGACGCTTATTCACGCCCTGTG CCCGCTTCAAAGACTGTCTCAAGCCTTTCATCTCTTCTGCGAGATGCTGCGCAGGGGTCTGTTGCCGCGTGACCGCACTT ATAATACTTTGATCAATGCTTATTGTCTTCAAGGACAATTCAGTAAGGCTTTTCAAATCCATCATCAACTGTTACTACAC AATGCTGATTTTGTTTCTGCCTTTTCGCCATCTCTTGTTACATACAATGCACTTATTCATGGCTATTGCTTTCTCGGGAG GCTTCAGGAGGCGCTGGGGATTTTGAGGGGCATGCCTCAGATGGGATTGTCCCCTGATGGTGTTAGTTATAACCCTGTTA TATCCGCGTTATGCCGAATCCGGGAGCCGGGGAAGGCCTTTGATTTGAAGTTTGAGATGGATGAAAAGAGCATCGGTCCG TTGGATGAAGACACCAATGAATCACTTATGGAACAACTGTCGGATGAGGATACTTATTCTAGTTTGATGAATGAATATTT TGCTCAAGGTAACTTGGAAAAGGCTTATCAGTTGGAAGTTGAAGTGGATCACGATCGTTACATGCTACCTTGTGTTACCA TGAGTGTGTTTTTGAATGGACTTAACAAGAAAGCTAGGACAAGCGAAGCTAAGTGGATTCTTCTGCGCAAGATTTTTGAT TGGTGTTCGCGATTTCCAACTTATATAATATATGATACCCTGATAGAGAACTGCAGTAATGATGAATTTAAGAGCGTGGT AGGGCTTGTCAAAGGCTTCAGCAAGAGGGGTTTAGTGAGTAAAGCAGCCAGAGCTCATGACACAATGCTCGAAGGGAATT ATAAGCCAGATGGAGCAGTTTATAATTTATTAATATTTGATCATTGTAGATGCCTTAATGTTCGTAAGGCCTATAATATG TACATGGAGATGGTGCATTATGGTTTTGTTCCTCATATGTTCTCTGCACTTGCTCTTATTAAGGCTCTACATTATTGCGG AAGGCAGAATGAGATGAGTTGGGTAATTCAAAACACATTGAGGAGCTGTAATCTCAATGAGTTTGAGCTACCTAAAGTAC TTAATGAAATTGACTTCCCGAAATGTAAAATTAATGCTCTTTTGGATGTACTAGCTGAAATTGCCATGGATGGCCTGTTA CTTGATGGTGGAAAGTGTTCATATGCCTCAGCAAGAACCTAA 

Protein sequence (LotjaGi1g1v0733500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKLLLRLSFNGVLRRPSVNTYNVVMIRGFSGNSESESESKAYAARILWRCSQERVDEAHKVLSQMIDTGFSPSVDTYNHI IHGYCRDNRFHEALGILSQMIDTGVSPSVATYNHIIHGYCAHKRVHEALGILRTMPHTPDALTYDIIIHQFCKLHDLDKA FQIKAEMLNNGILPNLYTYETLIHALCPLQRLSQAFHLFCEMLRRGLLPRDRTYNTLINAYCLQGQFSKAFQIHHQLLLH NADFVSAFSPSLVTYNALIHGYCFLGRLQEALGILRGMPQMGLSPDGVSYNPVISALCRIREPGKAFDLKFEMDEKSIGP LDEDTNESLMEQLSDEDTYSSLMNEYFAQGNLEKAYQLEVEVDHDRYMLPCVTMSVFLNGLNKKARTSEAKWILLRKIFD WCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNM YMEMVHYGFVPHMFSALALIKALHYCGRQNEMSWVIQNTLRSCNLNEFELPKVLNEIDFPKCKINALLDVLAEIAMDGLL LDGGKCSYASART 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 1 168 168 4.2E-33
ProSiteProfiles 38 72 35 8.429
PANTHER 40 134 95 1.8E-79
TIGRFAM 50 74 25 0.0031
Pfam 72 120 49 9.6E-15
ProSiteProfiles 73 107 35 12.704
TIGRFAM 76 109 34 4.0E-9
ProSiteProfiles 108 138 31 9.098
TIGRFAM 111 135 25 6.3E-5
PANTHER 123 333 211 1.8E-79
Pfam 139 187 49 1.3E-12
ProSiteProfiles 140 174 35 11.213
TIGRFAM 143 175 33 1.6E-6
Gene3D 169 239 71 5.6E-17
ProSiteProfiles 175 209 35 11.751
TIGRFAM 177 209 33 2.5E-5
Pfam 191 222 32 1.8E-7
ProSiteProfiles 210 244 35 9.087
TIGRFAM 213 237 25 2.2E-6
Gene3D 240 337 98 7.9E-19
Pfam 250 299 50 1.9E-12
ProSiteProfiles 251 285 35 12.638
TIGRFAM 253 286 34 7.6E-7
ProSiteProfiles 286 320 35 9.986
TIGRFAM 288 320 33 6.9E-5
ProSiteProfiles 335 369 35 7.761
PANTHER 335 519 185 1.8E-79
Pfam 338 358 21 0.62
Gene3D 396 529 134 1.6E-12
ProSiteProfiles 422 456 35 7.596
ProSiteProfiles 457 491 35 9.613
Pfam 460 489 30 0.032

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0733500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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