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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0733600 |
| Transcript ID | LotjaGi1g1v0733600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein, putative; TAIR: AT3G26640.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q38960|LWD2_ARATH WD repeat-containing protein LWD2; TrEMBL-Plants: tr|A0A0L9U8I3|A0A0L9U8I3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0733600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130717695..130719750) extracted from Lotus japonicus Gifu genome v1.2.
GGTGGTGCATGCTTTGCCCTCTCATATTTATTTCCTTTGCCATTGACCCTTCATCACAGGGCCATTCTAATTGTACTCTG CACTGCACGAAGATAACACCGGAGGCTTTGGAATCTCAGTAATGTAAGCCCCCTTTCTAAATTCTCTTTTAAGAGAGACA TATTCACACCTACACTTGTTTCAATCTTTCTGTCTCCTCTATGCATATACATATACATAAATACATATACATGATCATCT ATATCCTTTATAGTTCTATACAACTAATCACCTTTTCAGCCATATGTGTACCTCAGTTTCTGTTATCATCCAGTCAAAAC TCAAAAGAATCATCTATTAGAAATTCTCATATATTGCAAAATTCATTAGTTCCTTATATTGATATCTTCTTCAAAAATTC TATCACAGAAAGTCTAGAGACTCGATGAGACAAAGGTTTTTTATATGTTTGGATTGGCTTTTATGTCTTCATAATCAATT ATGAAACTCATTACCTACTCAAGAAACTTCCCTCCAAAATCATTATCGATTCTAGTTTTAGAATCAATTATAGAAAAATT TCCAAACAAGCACTAAATGCTTTATTAGATTCCATCGAGCCGGATAAGAAATTTCAGGGTTTCCTTACACAACCGTCAAC ACATTGATTGTGCATGAAAATAGGCTACCTGACATATGTGTGTATGTCTATAACATTTTTCAATGATACCATAAATAAGA TTTTGCCATATTGATTAACGTTGAGTTTAACGGATATTCAAAGAGAAACTTTTATACAATCAAAACAGAGTTTTTGACCC TGCAATCCAATGCAGATGGAATCCATGGAAGCAACCTTCAGCATGCAAAGCCAAACAGAGAAAAGCCAAGAAGGCATCCA CACTTATGCAGCTCAGTGGCCAATTTTCTCCATAGCATGGTCACTCCGCCGCGACAAAACCCCGCGACTCGCCATCGGAA GCTACTTAGAAGACTACGCCAACAAGGTAGAACTAGTCCACTTCAACCACGACGATACAACATCCAATTTCACCACCGAC CCTCGTCTGATTCTCGACCACCCTTACGCACCAACAAACACAATGTTCTTCCCCTCCGAAGACACCACAAATCCAGACCT CATCGCCACATCAGGAGACATCATAAGACTATGGGAAATCCAAGAAGACAAGATTCAACTAAAGTCCTCGTTAATCGGCA ACAAAGTGAGTGACCACTCTGCCATAACATCATTCGATTGGGCTGAATTTGACACCAATCTCATTGCTTCTTCTAGCGTG GACACAACTTGCACCATCTGGGATATTGAAAGGGAAGTCATGAATGCACAGTTGGTTGCTCATGATAAAGAAGTGTATGA TATCTCATGGGGTGGATTCAATGTGTTTGCTTCTGTCTCCGGCGATGGTTCTGTCAGAGTTTTTGATTTACGGGACAAGG AAAAATCTACTATAATCTATGAGAATCCAGTCCAGGATTGTCCTCTGCTTCGACTGGAATGGAATAAAAGCGATGCAAGG TTTATGGCTACCGTGGGGATAAACAGCAACAAGGTGGTAATCTTGGATATTAGGCTACCAACCACGCCATTGATGGAGCT AAGCAAACATAGGACGTGTGTTAATGCAGTGTCGTGGTCCCCAGGTTATGGTCGGAATCTGTGTTCTGTCAGTGATGATG CTACGGCTCTGATATGGGAGGTGGTGGACCCCCCGGGGTACGGATCAACGGTGATCGGTGGTGAGGTGGTGGAGCCCGCG ATGTGGTATGGGTCGCCGGCGGAAATCAATCACGTGCGTTGGTCCCCGGTGGGGATGGACTGGATTGCTCTTGCTTTCTT GAACAACTTGCAGCTGCTCAAGGTGTGAATGTGGTTGTGATCAGAAACAGAGCAGGAGTGAGTGCAGTGACCGAATAAAA ATAGTAGAAACTAGAAAGTTCCAATCAATTTGGGGACATTATTTTTGCTTGTCGATTTCGTACGGAAATGTAATAAATTC AGGAAGTTGACTTGCTAGGATATTTCTAATTTCTAATAATAGAGTTTGATATCTTT
CDS sequence (LotjaGi1g1v0733600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCCATGGAAGCAACCTTCAGCATGCAAAGCCAAACAGAGAAAAGCCAAGAAGGCATCCACACTTATGCAGCTCA GTGGCCAATTTTCTCCATAGCATGGTCACTCCGCCGCGACAAAACCCCGCGACTCGCCATCGGAAGCTACTTAGAAGACT ACGCCAACAAGGTAGAACTAGTCCACTTCAACCACGACGATACAACATCCAATTTCACCACCGACCCTCGTCTGATTCTC GACCACCCTTACGCACCAACAAACACAATGTTCTTCCCCTCCGAAGACACCACAAATCCAGACCTCATCGCCACATCAGG AGACATCATAAGACTATGGGAAATCCAAGAAGACAAGATTCAACTAAAGTCCTCGTTAATCGGCAACAAAGTGAGTGACC ACTCTGCCATAACATCATTCGATTGGGCTGAATTTGACACCAATCTCATTGCTTCTTCTAGCGTGGACACAACTTGCACC ATCTGGGATATTGAAAGGGAAGTCATGAATGCACAGTTGGTTGCTCATGATAAAGAAGTGTATGATATCTCATGGGGTGG ATTCAATGTGTTTGCTTCTGTCTCCGGCGATGGTTCTGTCAGAGTTTTTGATTTACGGGACAAGGAAAAATCTACTATAA TCTATGAGAATCCAGTCCAGGATTGTCCTCTGCTTCGACTGGAATGGAATAAAAGCGATGCAAGGTTTATGGCTACCGTG GGGATAAACAGCAACAAGGTGGTAATCTTGGATATTAGGCTACCAACCACGCCATTGATGGAGCTAAGCAAACATAGGAC GTGTGTTAATGCAGTGTCGTGGTCCCCAGGTTATGGTCGGAATCTGTGTTCTGTCAGTGATGATGCTACGGCTCTGATAT GGGAGGTGGTGGACCCCCCGGGGTACGGATCAACGGTGATCGGTGGTGAGGTGGTGGAGCCCGCGATGTGGTATGGGTCG CCGGCGGAAATCAATCACGTGCGTTGGTCCCCGGTGGGGATGGACTGGATTGCTCTTGCTTTCTTGAACAACTTGCAGCT GCTCAAGGTGTGA
Protein sequence (LotjaGi1g1v0733600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESMEATFSMQSQTEKSQEGIHTYAAQWPIFSIAWSLRRDKTPRLAIGSYLEDYANKVELVHFNHDDTTSNFTTDPRLIL DHPYAPTNTMFFPSEDTTNPDLIATSGDIIRLWEIQEDKIQLKSSLIGNKVSDHSAITSFDWAEFDTNLIASSSVDTTCT IWDIEREVMNAQLVAHDKEVYDISWGGFNVFASVSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDARFMATV GINSNKVVILDIRLPTTPLMELSKHRTCVNAVSWSPGYGRNLCSVSDDATALIWEVVDPPGYGSTVIGGEVVEPAMWYGS PAEINHVRWSPVGMDWIALAFLNNLQLLKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 345 | 340 | 1.8E-39 | ||
| PANTHER | 10 | 350 | 341 | 3.6E-178 | – | |
| PANTHER | 10 | 350 | 341 | 3.6E-178 | – | |
| SUPERFAMILY | 21 | 334 | 314 | 1.36E-33 | ||
| SMART | 119 | 163 | 45 | 0.078 | ||
| ProSiteProfiles | 130 | 304 | 175 | 15.136 | ||
| Pfam | 132 | 163 | 32 | 0.028 | ||
| ProSitePatterns | 150 | 164 | 15 | - | ||
| SMART | 166 | 204 | 39 | 9.6E-4 | ||
| Pfam | 173 | 204 | 32 | 0.21 | ||
| ProSiteProfiles | 173 | 213 | 41 | 8.771 | ||
| SMART | 255 | 295 | 41 | 2.7E-4 | ||
| ProSiteProfiles | 262 | 296 | 35 | 10.074 | ||
| ProSitePatterns | 282 | 296 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0733600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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