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LotjaGi1g1v0733700.2

Overview

Field Value
Gene ID LotjaGi1g1v0733700
Transcript ID LotjaGi1g1v0733700.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Peptidyl-prolyl cis-trans isomerase; TAIR: AT2G36130.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q9SIH1|CP18B_ARATH Peptidyl-prolyl cis-trans isomerase CYP18-2; TrEMBL-Plants: tr|I3T4L8|I3T4L8_LOTJA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi1g1v0733700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:130721607..130723092) extracted from Lotus japonicus Gifu genome v1.2.

ATGTGGGCGACGGCGGAAGGTGGTTCGCCGGAGGTTACTCTAGAAACTTCCATGGGTTCCTTCACCGTTGAGGTAATTTT CCGGTGTTCTTTGCTTGCTGGCTATAAACCCTAGATGAGATGAAAATTTGGGTGCTAAAAATATTTGAATTTTTTTGTTT GTTGGGTTTAGCTGTACTACAAGCATGCACCAAGAACTAGCAGGAACTTCATTGAACTATCTCGCAGAGGTTACTATGAC AATGTTAAATTCCACAGGATCATCAAGGTTACTATCTCCAATTTCATCGTTACCTATTGCTATTAAGTATTAATTAATCA ATGTTCTTACCTAGATTTGTGTGGTTTGTTGTGTAGGATTTCATAGTGCAAGGTGGGGATCCTACTGGAACAGGAAGGGG TGGAGAGTCAATTTATGGGTATCTATCATGCTTAAGCTTCTTCTTCTTCTTGTTTAGGGTTCTTAATCTTGTTTAGATAA TGAGTTGAAGAGCATTATCATATCTTTATATTTTTGTCCCTGCTTTTTTTAGTTCACTTGATGATTAGTCACTTTGTGTC ATTTTATTTTTTTATCACAGTGCAAAGTTTGAAGATGAGATCAGGCAAGAGTTGAAGCACACTGGAGCTGGTATCTTATC CATGGCAAATGCTGGCCCAAATACTAATGGCAGTCAGTTCTTTATTACTCTGGCACCATGCCCTTCTCTGGATGGTGAGT TCGTGTTTCCTTCACTGTTAAAATTTATTATTGCTTAGATAATTTTGTTCTGCTTTGTGTCGCCTGCTTGCATTGTTAGG ATTCTAAGCCGTCACTTTTTCAATCAAGTAACTTGGGAAGTATATACATGTTGCCGTATGTAGCTTTGTTAAGTGACACT GCACCATGCTCATTGTACTTAAACTGTCTCAGAATAAGGAAATGTCATCTTTTTTCTGGTTGGTGAGCTATGAAAAAGAG AATTGGTTTGGTAATTGGAAGAAGTTCATCTCCTGTTTTCTTTTCATCTCTTGACTTTTGGGTGAGACATTGATCCACAT GACCACTAATTAATCTAAAATATTCTGCTAGTGTAGCTTTTATCATTATACCATGAAGTTTCAGGTCACTGAACGCAAAA AGATTAGATGATCAACTGATGATATTAACGGGCATATTTACATCCAATTAGCAAAGTTATTATTTTTTCATTAATTACTA TATTCAACTCAACTAAATCGTTAGTCATAGCCTTAGTATTAGAATGGTTAAATTGATCAAGTTGGGTTGATATGTTTATG ATCAACCATTCTAATTCATATCATGAAATTTCTGGCATTCCTAATGATGCTCAATTTCTGTTTCTACCAGGAAAACACAC AATATTTGGAAGAGTTTGTCGGGGGATGGAAATAATCAAGAGGCTTGGCAGTGTCCAAACAGATAACAATGATAGGTATG TCAAATATCTTTCAAGATAACCATTGAAAACAGATATTATACATAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0733700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGGGCGACGGCGGAAGGTGGTTCGCCGGAGGTTACTCTAGAAACTTCCATGGGTTCCTTCACCGTTGAGCTGTACTA CAAGCATGCACCAAGAACTAGCAGGAACTTCATTGAACTATCTCGCAGAGGTTACTATGACAATGTTAAATTCCACAGGA TCATCAAGGATTTCATAGTGCAAGGTGGGGATCCTACTGGAACAGGAAGGGGTGGAGAGTCAATTTATGGTGCAAAGTTT GAAGATGAGATCAGGCAAGAGTTGAAGCACACTGGAGCTGGTATCTTATCCATGGCAAATGCTGGCCCAAATACTAATGG CAGTCAGTTCTTTATTACTCTGGCACCATGCCCTTCTCTGGATGGAAAACACACAATATTTGGAAGAGTTTGTCGGGGGA TGGAAATAATCAAGAGGCTTGGCAGTGTCCAAACAGATAACAATGATAGGTATGTCAAATATCTTTCAAGATAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0733700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MWATAEGGSPEVTLETSMGSFTVELYYKHAPRTSRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGAKF EDEIRQELKHTGAGILSMANAGPNTNGSQFFITLAPCPSLDGKHTIFGRVCRGMEIIKRLGSVQTDNNDRYVKYLSR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:2.40.100.10
3 156 154 1.5E-69
IPR029000
PIRSF
PIRSF001467
3 156 154 8.5E-66
IPR024936
PANTHER
PTHR45625
11 150 140 4.7E-82 –
PANTHER
PTHR45625:SF5
11 150 140 4.7E-82 –
SUPERFAMILY
SSF50891
12 152 141 5.11E-60
IPR029000
Pfam
PF00160
12 151 140 2.8E-49
IPR002130
ProSiteProfiles
PS50072
15 157 143 32.586
IPR002130
PRINTS
PR00153
25 40 16 6.2E-32
IPR002130
ProSitePatterns
PS00170
46 63 18 -
IPR020892
PRINTS
PR00153
51 63 13 6.2E-32
IPR002130
PRINTS
PR00153
94 109 16 6.2E-32
IPR002130
PRINTS
PR00153
109 121 13 6.2E-32
IPR002130
PRINTS
PR00153
122 137 16 6.2E-32
IPR002130

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000413
Biological process Protein peptidyl-prolyl isomerization The modification of a protein by cis-trans isomerization of a proline residue.
Subterm of
GO:0003755
Molecular function Peptidyl-prolyl cis-trans isomerase activity Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
Subterm of
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0733700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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