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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0734000 |
| Transcript ID | LotjaGi1g1v0734000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|V7C741|V7C741_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0734000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130739480..130742235) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAGTGGAACTAGTTAATTAAAAGAAAAAGAAAAAGAAAACCCTTGTTGCGAAGCATGAAGCTCCTCCTCCGTCTTTC ATTCAACGGCGTGTTGCGGCGGCCGAGCGTTAACACTTACAACGTCGTAATGATCCGCGGCTTCTCTGGGAACTCAGAAT CAGAATCAGAATCGAAGGCTTACGCGGCTCGGATTCTATGGAGATGCAGCCAGGAGCGTGTAGATGAGGCTCATAAGGTT TTGAGTCAAATGATTGATACTGGGTTTTCTCCCTCGGTTGATACATACAACCACATTATTCATGGCTATTGCCGTGATAA CAGGTTTCATGAGGCTCTGGGGATCTTGAGTCAAATGATTCATACTGGGGTTTCTCCCTCGGTTGCTACATACAACCACA TCATTCATGGCTATTGCGCTCATAAGAGGGTTCATGAGGCTCTGGGGATTTTGAGAACCATGCCTCACACACCTGATGCT CTTACTTATAACATTATAATTCATGAGTTTTGCAAACTCCACCACCTCGACAAGGCCTTTCAAATCAAGGCGGAGATGCT CAACAATGGCATCTTGCCTAATCTTTACACGTATGAGACGCTTATTCACGCCCTGTGCCCGCTTCAAAGACTGTCTCAAG CCTTTCATCTCTTCTGCGAGATGCTGCGCAGGGGTCTGTTGCCGCGTGACCGCACTTATAATACTTTGATCAATGCTTAT TGTCTTCAAGGACAATTCAGTAAGGCTTTTCAAATCCATCATCAACTGTTACTACACAATGCTGATTTTGTTTCTGCCTT TTCGCCATCTCTTGTTACATACAATGCACTTATTCATGGCTATTGCTTTCTCGGGAGGCTTCAGGAGGCGCTGGGGATTT TGAGGGGCATGCCTCAGATGGGATTGTCCCCTGATGGTGTTAGTTATAACGCTGTTATATCCGCGTTATGCCGAATCCGG GAGCTGGGGAAGGCCTTTGATTTGAAGTTTGAGATGGATGAAAAGAGCATCGGTCCGTTGGATGAAGACACCAATGAATC ACTTATGGAACCACTGTCGGATGAGGATACTTATTCTAGTTTGATGAATGAATATTTTGCTCAAGGTAACTTGGAAAAGG CTTATGCGTTGGAATTTGATATGGATCACGATCGTTACATGCTACCTTGTGTTACCATGAGTGTGTTTTTGAATGGACTT AACAAGAAAGCTAGGACAAGCGAAGCTAAGTGGATTCTTCTGCGCAAGATTTTTGATTGGTGTTCGCGATTTCCAACTTA TATAATATATGATACCCTGATAGAGAACTGCAGTAATGATGAATTTAAGAGCGTGGTAGGGCTTGTCAAAGGCTTCAGCA AGAGGGGTTTAGTGAGTAAAGCAGCCAGAGCTCATGACACAATGCTCGAAGGGAATTATAAGCCAGATGGAGCAGTTTAT AATTTATTAATATTTGATCATTGTAGATGCCTTAATGTTCGTAAGGCCTATAATATGTACATGGAGATGGTGCATTATGG TTTTGTTCCTCATATGTTCTCTGCACTTGCTCTTATTAAGGCTCTACATTATTGCGGAAGGCAGAATGAGATGAGTTGGG TAATTCAAAACACATTGAGGAGCTGTAATCTCAATGAGTTTGAGCTACCTAAAGTACTTAATGAAATTGACTTCCCGAAA TGTCAAATTAATGCTCTTTTGGATGTACTAGCTGAAATTGCCATGGATGGCCTGTTACTTGATGGTGGAAAGTGTTCATA TGCCTCAGCAAGAACCTAATATCTTCGGTTTTGCTTGTTGAACTCTGTTACCATAAACCTTGAGCTGACTCTTCCAGCTT GCATCTAGCTTGCTTTGGCTTGGAGACTTGCAACATGGAAAGCTCTCCCTTGCTAGGAAAGCAGATTATCATCTTTAAGT GGAACTCTACGGCTATCAAAGACCACCTTCTAGACCAGGTCATTTAGATCATTATTTAAATTGTCAAGTATGAAGTAACG TGCTTTCAATCATAAGTAGAAATTGTTTTCTCTGTGTTTTTTAAATCAAATTCTTACTGTTTATAATTTACTTTGAGGTT GTTGGGAATCATGTTCTTTAAGTGGAACTCTACTGTTTTGCCTGATGTTTTTATGTACTGTAGTGAGTTTGAGGAGCTTG AACCAGTGTCAATTATAAGAGAAAGCCTCCTAGAGACTAGAGTCATCGTGTGCTGCTGCTTCTGCAAATACACCTGAAGA TCATGTTTTTACTAAACTCCTTGAACATATATAATTTAGTTTCATGCCACTTTTCTCTACTTTCTGATGAATGCTTCAAT AATGTCAATTGTAAGTTGATTTTTATTATATGATGTATGTGGCTGTACAATTTTATGAATTCAATTGTTGCAGGCATCCA AGGTTACTGGAAATTATGCGTCAAGTGTATAAAGTTTTGGACAGCCCTACCATTCTGAATTAAATTCCTTTTGCTTTCTA AAACTTCATTGAAGTGGAAGGTAGTAATGATTTAAGTACCTGTGATGGCAGTAACTTGGTTTCACTCAGATCAGATCACC TTCAAATTTTGTTTTTCTAGCTTGTAAAATTAACTTATCTCTGATGCCACTGTACATTATACTTTGTCCAGAATGGGGAA ATTTTGGAAAGTGCAGTCAATTCTCTATATTTTCTCCTCATAATTTGACACGGTATTAAAAAAATGTAAGTGTGAATTTA AAATTTCAGATTGGCTACAAATTGATAAAATATGCA
CDS sequence (LotjaGi1g1v0734000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTCCTCCTCCGTCTTTCATTCAACGGCGTGTTGCGGCGGCCGAGCGTTAACACTTACAACGTCGTAATGATCCG CGGCTTCTCTGGGAACTCAGAATCAGAATCAGAATCGAAGGCTTACGCGGCTCGGATTCTATGGAGATGCAGCCAGGAGC GTGTAGATGAGGCTCATAAGGTTTTGAGTCAAATGATTGATACTGGGTTTTCTCCCTCGGTTGATACATACAACCACATT ATTCATGGCTATTGCCGTGATAACAGGTTTCATGAGGCTCTGGGGATCTTGAGTCAAATGATTCATACTGGGGTTTCTCC CTCGGTTGCTACATACAACCACATCATTCATGGCTATTGCGCTCATAAGAGGGTTCATGAGGCTCTGGGGATTTTGAGAA CCATGCCTCACACACCTGATGCTCTTACTTATAACATTATAATTCATGAGTTTTGCAAACTCCACCACCTCGACAAGGCC TTTCAAATCAAGGCGGAGATGCTCAACAATGGCATCTTGCCTAATCTTTACACGTATGAGACGCTTATTCACGCCCTGTG CCCGCTTCAAAGACTGTCTCAAGCCTTTCATCTCTTCTGCGAGATGCTGCGCAGGGGTCTGTTGCCGCGTGACCGCACTT ATAATACTTTGATCAATGCTTATTGTCTTCAAGGACAATTCAGTAAGGCTTTTCAAATCCATCATCAACTGTTACTACAC AATGCTGATTTTGTTTCTGCCTTTTCGCCATCTCTTGTTACATACAATGCACTTATTCATGGCTATTGCTTTCTCGGGAG GCTTCAGGAGGCGCTGGGGATTTTGAGGGGCATGCCTCAGATGGGATTGTCCCCTGATGGTGTTAGTTATAACGCTGTTA TATCCGCGTTATGCCGAATCCGGGAGCTGGGGAAGGCCTTTGATTTGAAGTTTGAGATGGATGAAAAGAGCATCGGTCCG TTGGATGAAGACACCAATGAATCACTTATGGAACCACTGTCGGATGAGGATACTTATTCTAGTTTGATGAATGAATATTT TGCTCAAGGTAACTTGGAAAAGGCTTATGCGTTGGAATTTGATATGGATCACGATCGTTACATGCTACCTTGTGTTACCA TGAGTGTGTTTTTGAATGGACTTAACAAGAAAGCTAGGACAAGCGAAGCTAAGTGGATTCTTCTGCGCAAGATTTTTGAT TGGTGTTCGCGATTTCCAACTTATATAATATATGATACCCTGATAGAGAACTGCAGTAATGATGAATTTAAGAGCGTGGT AGGGCTTGTCAAAGGCTTCAGCAAGAGGGGTTTAGTGAGTAAAGCAGCCAGAGCTCATGACACAATGCTCGAAGGGAATT ATAAGCCAGATGGAGCAGTTTATAATTTATTAATATTTGATCATTGTAGATGCCTTAATGTTCGTAAGGCCTATAATATG TACATGGAGATGGTGCATTATGGTTTTGTTCCTCATATGTTCTCTGCACTTGCTCTTATTAAGGCTCTACATTATTGCGG AAGGCAGAATGAGATGAGTTGGGTAATTCAAAACACATTGAGGAGCTGTAATCTCAATGAGTTTGAGCTACCTAAAGTAC TTAATGAAATTGACTTCCCGAAATGTCAAATTAATGCTCTTTTGGATGTACTAGCTGAAATTGCCATGGATGGCCTGTTA CTTGATGGTGGAAAGTGTTCATATGCCTCAGCAAGAACCTAA
Protein sequence (LotjaGi1g1v0734000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLLLRLSFNGVLRRPSVNTYNVVMIRGFSGNSESESESKAYAARILWRCSQERVDEAHKVLSQMIDTGFSPSVDTYNHI IHGYCRDNRFHEALGILSQMIHTGVSPSVATYNHIIHGYCAHKRVHEALGILRTMPHTPDALTYNIIIHEFCKLHHLDKA FQIKAEMLNNGILPNLYTYETLIHALCPLQRLSQAFHLFCEMLRRGLLPRDRTYNTLINAYCLQGQFSKAFQIHHQLLLH NADFVSAFSPSLVTYNALIHGYCFLGRLQEALGILRGMPQMGLSPDGVSYNAVISALCRIRELGKAFDLKFEMDEKSIGP LDEDTNESLMEPLSDEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARTSEAKWILLRKIFD WCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNM YMEMVHYGFVPHMFSALALIKALHYCGRQNEMSWVIQNTLRSCNLNEFELPKVLNEIDFPKCQINALLDVLAEIAMDGLL LDGGKCSYASART
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 9 | 163 | 155 | 4.7E-32 | ||
| ProSiteProfiles | 38 | 72 | 35 | 8.429 | ||
| PANTHER | 40 | 134 | 95 | 2.2E-81 | – | |
| TIGRFAM | 50 | 74 | 25 | 0.0031 | ||
| Pfam | 72 | 113 | 42 | 2.8E-11 | ||
| ProSiteProfiles | 73 | 107 | 35 | 12.496 | ||
| TIGRFAM | 76 | 109 | 34 | 8.7E-9 | ||
| ProSiteProfiles | 108 | 138 | 31 | 9.098 | ||
| TIGRFAM | 111 | 135 | 25 | 6.3E-5 | ||
| PANTHER | 122 | 329 | 208 | 2.2E-81 | – | |
| Pfam | 139 | 187 | 49 | 2.1E-14 | ||
| ProSiteProfiles | 140 | 174 | 35 | 11.663 | ||
| TIGRFAM | 143 | 175 | 33 | 6.2E-7 | ||
| Gene3D | 168 | 238 | 71 | 8.0E-17 | ||
| ProSiteProfiles | 175 | 209 | 35 | 11.751 | ||
| TIGRFAM | 177 | 209 | 33 | 2.5E-5 | ||
| Pfam | 191 | 222 | 32 | 1.8E-7 | ||
| ProSiteProfiles | 210 | 244 | 35 | 9.087 | ||
| TIGRFAM | 213 | 237 | 25 | 2.2E-6 | ||
| Gene3D | 239 | 318 | 80 | 7.7E-17 | ||
| Pfam | 250 | 299 | 50 | 2.2E-13 | ||
| ProSiteProfiles | 251 | 285 | 35 | 12.638 | ||
| TIGRFAM | 253 | 286 | 34 | 7.6E-7 | ||
| ProSiteProfiles | 286 | 320 | 35 | 10.468 | ||
| TIGRFAM | 288 | 320 | 33 | 1.3E-5 | ||
| ProSiteProfiles | 335 | 370 | 36 | 8.177 | ||
| PANTHER | 335 | 518 | 184 | 2.2E-81 | – | |
| Pfam | 338 | 362 | 25 | 0.37 | ||
| Gene3D | 406 | 530 | 125 | 1.9E-12 | ||
| ProSiteProfiles | 422 | 456 | 35 | 7.596 | ||
| ProSiteProfiles | 457 | 491 | 35 | 9.613 | ||
| Pfam | 460 | 489 | 30 | 0.032 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0734000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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