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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0739300 |
| Transcript ID | LotjaGi1g1v0739300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0739300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131345322..131347714) extracted from Lotus japonicus Gifu genome v1.2.
TAGGTGCTCATGGTGGACACTTACAAAAATGGTACACGGAGGACCAATGCCTTAAAATTGTTGAATATAAAAATCTTGGA ATAGTCTTAAAATAGGTGGATTGGGGGTAAAAGCGTCATATCCTCTCTCCCTAACTCAATTATTCTCAAACTTTCCTCTA TCAGTGAAAATTGTTTTTCTGTTAATGTGGGGTTGCATATGTTGCTGTTGCTGTATCAAAGGATGAACAGTGACGTCGTC GAAGGTCAAGGATGACGGCGGCGGAGGTGATGGTGGTTGTTGGTGGCTGCCATAGGGTGTTGGGGATGGGGGAGGGAAAT TACTGAAGAGGCCCTTGGTCCACCATGATCCATTTTTGATTTTTCTAAGTGTCGACCACCGTTTTCGACGTGCTAGTTTT GTCATCATTATACTATTTATTCTTATCTTTTGATCTTTATTATTGTTTCAGTGTTTCGATTCCCCTACTGGTCTTCCGCC GCCGTATGCGACCACCGCCGGAAGCCGTGTGCGACGCCTGTGTCGGCTGTTCGAGTGACTCCCGTCGAGGTAAAGCGAAC TCACACACTCCAATCTCCATTAATAGTAGTAATCATAATCATTAATACACACACTTTGTCACAAACTGAAACAAATTTAT CATTCAATATTTTGACTCTCAAATCATTATTGATTTTTTAATATACTTGCCTGCATGTTGTCTGTAATCTACTACTGTGG TGGTGACTGGTGATAATGATTATAATTTTTTGATTGAATTCATGGTGATACATAACACAGATCACAATTAATCTTAATCA TCATGATCAGATTTCTAAGTTGTGATATCATTTGGATACGGGTTAAAGAGCACAGAGCACTTACTCGAAAGTCTTCTTTG ATCCGCATCCAAACATATTCTATTTCACTTTTTGTTTCTAAAATCCCATTATTTTGTCAATTTTCTCTAGCATGAAGACT GATAAACAACATCTGCCTCAAGATTTGATAACTGAAATCCTGTTGAGGTTGCCGGTGAAGTCTCTTGTACGCTTCAAGGC TGTGTGCAAGTTTTGGCGGTCTCTGATATCCGATCCCCACTTTGCAAGAACACATTTTGAACTTGCTGCCCCGAGATTTG TGTTCAATACCTTTCATGGTATTCGAACCATGGACTTAGATGGACCGCTTAGCTCTAATCCTCTTTCTGGGGCAATAAAT ATTGACTTTTTGCCTACAAGTATTGTTATTGTAGGTTCATGTAGAGGCTTTCTGCTGTTGTTGGACAGTATTGGAAGCCT CTACCTGTGGAATCCAGCCACACGCGTCTACAAACCAATACCTTCACCTACTTACAATGTTTTTTCTTGTCTATATGGTT TTGGGTATGATTCATCAAAAGATGATTACTTGGTGGTTCTAGTGTATCAACCAAAATCCTCACCTCGATTACATGTGCAG TTCTTCTCATTGAGAGATAATATGTGGAAATATGTTGGGGGTGGTAGTGGTACCGATTTGCCTAGCTTGAACCTCTCCTG TAATGTCAATGTCAAAGCTGGGTTGCTCTTCAACGAGACCATTCACTGGTTGGCTTATGATCATGATAGATTACTGAATG TTATTATTGCCTTTGATTTAACGGAGAAGAGACTTCTAGAGATTCCCCAACCAGATGATCTTGCTTGTGACCTTTCATAT TGTAATTTGTGGGTGCACGGAAGATTTTTGAGTCTATCGGTTAGCAGGTTTTATACAATTGAAATATGGGTTATGGAAAA ATACAAAGTACACTCTTCTTGGACCAAGACCATTGTTCTCTCTTTGAGTCACATTTTCCCTGTATGCTCTACAAAAAGTG GGAATATTGTTATGGATGATGCAACAAATCTGCTGAAGTTTACTGATAAAGGAGAATACCTAGAGCATTGCGCGTATCCT GGTCTTCTAGAATCCCAGGTGCCCATGTATACAGAGTCTATCCTTTCACTCCCCGGTGTTAGTGAGTAACAAATGAGAAT GATATCATTTGTGTTGTAAATCTTGTGACATTTTGATGTGTTGAACTATGAGAATGATATAATTTGTGTTGTAAATCTTG TGATATTATGATGTATTGAACTATGAGAAGTGATATAGGACAGAATAATGAAAATGCTTTGAAACAGAATTAGACTCATG TTATTTGTTCTCCTTTGACTACTTCGTTGTTATTTCCTTTGTTCTTTTTATTGCGTGTAGTCCAGATGTTCACCGTGATG TTTTTTTTTTTGAAAGTCACCATGATGTTAATAGTGTGTTAATGTTAGTAAAATATCGAACCACACCAGGTCCTTTAGTT TTTTTCTTTTGGAGATAGTCGTGAATAAATAAAATATATATTATTTCATTTATATATATATTATTTATAGTAT
CDS sequence (LotjaGi1g1v0739300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGACTGATAAACAACATCTGCCTCAAGATTTGATAACTGAAATCCTGTTGAGGTTGCCGGTGAAGTCTCTTGTACG CTTCAAGGCTGTGTGCAAGTTTTGGCGGTCTCTGATATCCGATCCCCACTTTGCAAGAACACATTTTGAACTTGCTGCCC CGAGATTTGTGTTCAATACCTTTCATGGTATTCGAACCATGGACTTAGATGGACCGCTTAGCTCTAATCCTCTTTCTGGG GCAATAAATATTGACTTTTTGCCTACAAGTATTGTTATTGTAGGTTCATGTAGAGGCTTTCTGCTGTTGTTGGACAGTAT TGGAAGCCTCTACCTGTGGAATCCAGCCACACGCGTCTACAAACCAATACCTTCACCTACTTACAATGTTTTTTCTTGTC TATATGGTTTTGGGTATGATTCATCAAAAGATGATTACTTGGTGGTTCTAGTGTATCAACCAAAATCCTCACCTCGATTA CATGTGCAGTTCTTCTCATTGAGAGATAATATGTGGAAATATGTTGGGGGTGGTAGTGGTACCGATTTGCCTAGCTTGAA CCTCTCCTGTAATGTCAATGTCAAAGCTGGGTTGCTCTTCAACGAGACCATTCACTGGTTGGCTTATGATCATGATAGAT TACTGAATGTTATTATTGCCTTTGATTTAACGGAGAAGAGACTTCTAGAGATTCCCCAACCAGATGATCTTGCTTGTGAC CTTTCATATTGTAATTTGTGGGTGCACGGAAGATTTTTGAGTCTATCGGTTAGCAGGTTTTATACAATTGAAATATGGGT TATGGAAAAATACAAAGTACACTCTTCTTGGACCAAGACCATTGTTCTCTCTTTGAGTCACATTTTCCCTGTATGCTCTA CAAAAAGTGGGAATATTGTTATGGATGATGCAACAAATCTGCTGAAGTTTACTGATAAAGGAGAATACCTAGAGCATTGC GCGTATCCTGGTCTTCTAGAATCCCAGGTGCCCATGTATACAGAGTCTATCCTTTCACTCCCCGGTGTTAGTGAGTAA
Protein sequence (LotjaGi1g1v0739300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTDKQHLPQDLITEILLRLPVKSLVRFKAVCKFWRSLISDPHFARTHFELAAPRFVFNTFHGIRTMDLDGPLSSNPLSG AINIDFLPTSIVIVGSCRGFLLLLDSIGSLYLWNPATRVYKPIPSPTYNVFSCLYGFGYDSSKDDYLVVLVYQPKSSPRL HVQFFSLRDNMWKYVGGGSGTDLPSLNLSCNVNVKAGLLFNETIHWLAYDHDRLLNVIIAFDLTEKRLLEIPQPDDLACD LSYCNLWVHGRFLSLSVSRFYTIEIWVMEKYKVHSSWTKTIVLSLSHIFPVCSTKSGNIVMDDATNLLKFTDKGEYLEHC AYPGLLESQVPMYTESILSLPGVSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 47 | 46 | 10.531 | ||
| PANTHER | 3 | 338 | 336 | 2.1E-92 | – | |
| PANTHER | 3 | 338 | 336 | 2.1E-92 | – | |
| Gene3D | 6 | 44 | 39 | 1.7E-10 | – | |
| Pfam | 7 | 46 | 40 | 5.9E-9 | ||
| SUPERFAMILY | 7 | 61 | 55 | 2.88E-16 | ||
| SMART | 8 | 48 | 41 | 6.2E-9 | ||
| TIGRFAM | 95 | 286 | 192 | 8.2E-24 | ||
| Pfam | 198 | 317 | 120 | 1.0E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0739300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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