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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0741900 |
Transcript ID | LotjaGi1g1v0741900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Sterile alpha motif (SAM) domain-containing protein; TAIR: AT3G11890.1 Sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|Q24009|BICC_DROME Protein bicaudal C; TrEMBL-Plants: tr|I1JQD2|I1JQD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0741900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131582653..131584910) extracted from Lotus japonicus Gifu genome v1.2.
TAAAGGTCAGTAGGTCACACTACTTGCGCGTCCTAATATGTGATCAATTTTCACTCCACTGCTACTACTGCACATTAATC AAAGGAATTTAATTTTTAATGCAATACCAGTGTAAAACAGGTTTATATTAACAACTAATAGGATAAAGAGTTATTTTCAT TTTAAATGTAAATTAAAATAAAAAGAATATTTTATGATGTTACGATTTTCCTTCGATTTGATGCGAGGAATTGGGAGTCG CTGCTAAGCTGAAGAGAGAAGAAATTGAAATAGGGTTTGCTCAATCTTCTTCTTCTTGATTCCAACACAAGATTCAATTA TTCGTCCAGGACCGAGGTTTTTCACTTTACCCTCCTCTATCGTTTTGATTTGTTTATCTTTTTCTCATTCTTCTCGATCT GTATTGTATTGTATGTATCTGTAGCGTGCGTGTAGATTCCAAATTCGTCGTTTTCCCTATTTCGCGTGTTAGAGGACAAT TCATATCTAATTGCTGTTGAATCGATTTTAATTTCAGTGCTACAAATTTTTCAATTGGCTATACTCACCTTTGATCTCAA GCAAGTTTTTTGTATACATGTTATTTGTGAAACTGAAATGATATCACTGGATTACAAGTTATTTTGCTCTGGGATGGAGT TTTTATTATATTTTTCAATAATTTTTTAAATAATTCTTTTCATGACTTTTTTATGAAATGAGAGCTTGAATGTTGTTAGT GGTTTAATTTAATGCTATATTTCCTGACAAGTAGGTTCTAAGCTAATGGTGAAACCAAAGAAAAGGGACACTGGAAAAGT TCCTGGTAAAAAGAGTGGTACTGCACATCGCCTTAATGATACTCCAGGCCTTGAAAATCAGCATGAGGATGGTGATTGGG TTATAGTGAAAAAGCAGAGAGTCACCATTCTGGTGTCTGCTGCACCTCGTGGCGAGGGAGACCAAGAACCGAGTCATGTG CATCCTATGCCTCCTGGAACGTTAAGTAGTAACCGCGTGGAGCTTCCCATGGAGACTTCTACACTAAATCCTTCAGGTAG TGAACACGAGAAGACCATTCTACCAGCTGCCGAAGAGGAGACTCGCGCTGTGGGAAGAGCTTCTCCTCCCTTACCCAAAT CACCTTTAGCCAATTCCCCATGGGTGGATCAAAGAATAGAACCAGAAAATCCACATCAAGTGAGTACTTTGAAGTCACAT GAATTACTTGGAGTATCTAATGCATCAAAAGCTATTAGGCAGCCCAGAACATTACTTGCACCAAGAATGTCTTCCAATTT GGTTACTCTAAGTCATGGTCTGCGGGCATCGAATCTGACAAGAAAGCTAGAAAGAGCTGGTGGGTTGAGCAGGTGGCTGA CATCACTTGGACTGGAGCAGTTTGTGAGAATTTTTCAAGGGAAGAGAGTCAGCAAGTATCACCTAGCTAACCTCACCATG CAAAAACTCAAGGATATGGGCGCCAGTGCTGTCGGACCTCGCAGGAAACTGATCCACGCCATCGACTGTGTTTGCCAGCC ATATTGCTTCGAGGCCCTATAGAAGTCCATAAGATCTTGAACTTGTTAGATACACAAACGTTCCAAGCCTCTAGGGCACT GTCCAAATTCAAGACTTAGTTTCTGGGTACTATTGTGATGGTTCTAGCACTAGGCCTAAATAGTTTTCTTAAGAGATTTC TGGCCTTGTATATATTTTAAACTAGTTCAGTCTGAGAAATATTGTTATTGTTACTGTCACAAGACACTTTTTTAGGATGT GGGGAATTCTTTCATTGGGTAAACTTCCTTTGGGGCTTCTATTACAAACAGATCCTTAGAGAATGAAATCTTTGGGTAAA AAAATGTGTAATTTGCAATTTTCTGAGACTGCTAATAATCCTTGTTGTTAGCATGGAGCTGTTTGATGAAAATTTAGCTT ATATATGTGTGGAGGGTCACAAGACGTCACTAATGGGATATTTGTGGAGTTTGTCCTGAGTTCATTTGATTATTAGAACA CTGATTGGTGGTTTGTTTGCACACAAGCAATTAGGTTCATAAGAGTGACAAGCCAGTGGGTAGAGATTGCTGATACGCAA GCTATTGATGGTGGTGACTTGGCAATAATGACTTCTCATTTGAACCATTGAAAAATGTTATTTCTCCTAACTACTCATTA GGCTTCAATTATCACAAGGCATAATCACTTTGTTAATATCTGAAATTCTATCATTCACTGAGACATTTTTTCACTTGGCA ATAATGATTTTATATTAT
CDS sequence (LotjaGi1g1v0741900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAAACCAAAGAAAAGGGACACTGGAAAAGTTCCTGGTAAAAAGAGTGGTACTGCACATCGCCTTAATGATACTCC AGGCCTTGAAAATCAGCATGAGGATGGTGATTGGGTTATAGTGAAAAAGCAGAGAGTCACCATTCTGGTGTCTGCTGCAC CTCGTGGCGAGGGAGACCAAGAACCGAGTCATGTGCATCCTATGCCTCCTGGAACGTTAAGTAGTAACCGCGTGGAGCTT CCCATGGAGACTTCTACACTAAATCCTTCAGGTAGTGAACACGAGAAGACCATTCTACCAGCTGCCGAAGAGGAGACTCG CGCTGTGGGAAGAGCTTCTCCTCCCTTACCCAAATCACCTTTAGCCAATTCCCCATGGGTGGATCAAAGAATAGAACCAG AAAATCCACATCAAGTGAGTACTTTGAAGTCACATGAATTACTTGGAGTATCTAATGCATCAAAAGCTATTAGGCAGCCC AGAACATTACTTGCACCAAGAATGTCTTCCAATTTGGTTACTCTAAGTCATGGTCTGCGGGCATCGAATCTGACAAGAAA GCTAGAAAGAGCTGGTGGGTTGAGCAGGTGGCTGACATCACTTGGACTGGAGCAGTTTGTGAGAATTTTTCAAGGGAAGA GAGTCAGCAAGTATCACCTAGCTAACCTCACCATGCAAAAACTCAAGGATATGGGCGCCAGTGCTGTCGGACCTCGCAGG AAACTGATCCACGCCATCGACTGTGTTTGCCAGCCATATTGCTTCGAGGCCCTATAG
Protein sequence (LotjaGi1g1v0741900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKPKKRDTGKVPGKKSGTAHRLNDTPGLENQHEDGDWVIVKKQRVTILVSAAPRGEGDQEPSHVHPMPPGTLSSNRVEL PMETSTLNPSGSEHEKTILPAAEEETRAVGRASPPLPKSPLANSPWVDQRIEPENPHQVSTLKSHELLGVSNASKAIRQP RTLLAPRMSSNLVTLSHGLRASNLTRKLERAGGLSRWLTSLGLEQFVRIFQGKRVSKYHLANLTMQKLKDMGASAVGPRR KLIHAIDCVCQPYCFEAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 37 | 37 | - | – | |
MobiDBLite | 1 | 15 | 15 | - | – | |
PANTHER | 5 | 257 | 253 | 3.5E-67 | – | |
PANTHER | 5 | 257 | 253 | 3.5E-67 | – | |
MobiDBLite | 53 | 76 | 24 | - | – | |
SMART | 186 | 252 | 67 | 3.5E-7 | ||
SUPERFAMILY | 193 | 251 | 59 | 2.62E-12 | ||
CDD | 194 | 248 | 55 | 2.51964E-15 | – | |
ProSiteProfiles | 194 | 252 | 59 | 11.969 | ||
Pfam | 194 | 248 | 55 | 4.2E-14 | ||
Gene3D | 194 | 249 | 56 | 3.0E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0741900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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