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LotjaGi1g1v0742600.1

Overview

Field Value
Gene ID LotjaGi1g1v0742600
Transcript ID LotjaGi1g1v0742600.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description 30S ribosomal protein S7; TAIR: AT2G37270.1 ribosomal protein 5B; Swiss-Prot: sp|O65731|RS5_CICAR 40S ribosomal protein S5; TrEMBL-Plants: tr|I3SG74|I3SG74_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0742600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:131624809..131628170) extracted from Lotus japonicus Gifu genome v1.2.

CTTTAGGGTGCCTGGGTGCATTTTCCCCTTATATTTTCATGGGCTCGCACTATATAAACACCTAAACTAGGGTTTTGTTT CTCGTCACAGTTGAGCTGCCCCAGTGAGCGAGCGAGAACGCTTGGAAGCACAGAGCCGCCGCCTCATCCTCCTCTGCAAC TCAAGTAGGTTTACCTTCTTCTCTCTTCTCCCTGGTTTTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTTTCGCTA ACTAACCTTCTCTGTTGAATCGCTCTTCTCATACAGCAATGGCTGAAACCGTCGCTGTCGAAGTTGATCCCTCCCAAATC GAGGTCAAGCTCTTCAACAGGTGGAGCTACGACGATGTTCAGGTATTCCACTCCACTCTCCTCATTTTCTTTGTTATCTC GTGATTCGTCGTTTTAGATCTTCATTTTTGCATTTTCATTCCAATTTTTCACCTCAATCTTATTATTATTATTATTATTA TTATTATTATTATGCCTGATGTAATGATAGTTAGATTTGACATGGTTCTTTATTTTGATACTCTAGAATTCTTAGTTTGT TCTGATTATATAGCCATTGTTGTCTGTATGAACAGTGATATTTATTTTGTAATTTTTATTTTTTTGAAGGTTACTGACAT ATCTTTGGCTGATTACGTCGGAGTGGTGGCATCGAAGCACGCAACATATGTTCCTCACACTGCTGGTAGGTACTCTGTCA AGCGTTTCAGGAAGGCCCAGTGTCCTATCATTGAGAGGCTCACCAACTCTCTCATGATGCACGGGAGAAACAATGGAAAG AAATTGATGGCTGTCAGGATTATCAAGCATGCTATGGAAATCATTCACTTGCTGACTGACCTCAACCCAATTCAAGTTAT CGTCGATGCTGTCATCAACAGGTATGTGCATTCTTTTGATGGGTTGAATTCAAATGCCTTTGCCTTTGGTTTTCTGTGTC CTTGTGATTGTGTGTATGTAATCATAGTTTGGGATGCTCAATCTTAGAGGATATTTTTTGCAAATGTAACATGATCATTG CACATGTTTCCTGGCTTATTATTTATTTTTGCACATAGATAACTGCATTTGATTTGTTTCTTTGTTTCAATTTTAAAATG TACATTGGGAGCTACTTCTCTCTGTCTTGAGTTGGAGAATGGAATGATGATTATTTATTTCCCTATTGGTTTGATTGCCT GAATGATGGCATTTTGTATTAGCTCTATCTGATCATTCTCCTTAAAGAAAGTTTCTGCACCTTTGATTTGGATACTGGTG ATCATATTTAGTTCATCTAATATTATCCCTTTGAAAGCAATTTATTTTCAAAGGGTGATGATTAAACACGTGAACTTCTT TGATGGTTTGTTTTACTTTGTCCAAGTTTTTTATACATAGAGTTTTGTTACTGATCAAGGTTCCTTAAATTCTGAACATT TGCATAATTGAGAGGATGAAATGATGATTTTATGTTTCCCTATTGGTTTGATTGCCTGGATGATGGCATTGTTGTATTAG CTCTATCTGATCATTCTCTTTATTTTGTTCTATAGGTAAATAAATCTGTGGAATTTGCTGAGTTTTTATTTTAAATTTGT AATAATAACAGTTTTTTCAGATAGTTTGCTTTTTTTCTCCTTGTGACTGGTAATTTTGCTTAAAGTATGCATACTTGCTT CAGGGAAAAAAAATTACAACTTGATGACCCAGTGAACTGCTAATCTTTGAAATTCAGGGCTTGACTGTTGGAAGTAGAGA ATGAAATGATGATTAAATGTTTCCCTATTGGTTTGATTGCCTGGATGATGGCATTTTGTATTAGCTCTATCTGATCATTC TCCTTATTGTAGACAAATATATGGGATTTGTCAGAAAAAATAAATTCAATTGGTATTAATAACTTGCAGGAATCTTTATG TTTGTTCCATTTTCCTCCTTTTGATTGTTTATTCCTTAATGCATGTGTTCTTACTTCAGCTAAATATAATTGAACTTGAT GTTACATTCATCCTTAATCTTTGAAATTGGGAGCTTGACTGTTTGAAGGCGGAGAATGAAATGATGAGTAATTGTTTCCC TATTGGTTTGATTGCCTGGATGATGGCACTTTGTATTAGTTCTATCTGATCATTCTCCTATATATTCTTCACCCTAGATG ATATATAGAGCATGTGAACTTTTGTGGTAGATAGCTCTCTTTCTAAGTGTTTTTTTCCTTAGATGTTTTGGTTTTCTATG TTCAGTTCTTTACATAATTCCCGCACATAGACAATTTACAATCCCTTTTTTTGTTCTTTTTATGTAGTGGTCCTCGTGAA GATGCAACCCGAATTGGGTCTGCTGGAGTTGTTAGGCGTCAAGCTGTTGATATTTCTCCCCTTCGCCGTGTTAACCAGGC TATCTACCTCCTAACAACAGGTGCACGTGAAGCGGCTTTTAGAAACATAAAGACAATTGCTGAATGCTTGGCTGATGAAC TTATTAACGCAGCAAAAGGTTCATCCAACAGGTATACTATTATACTTCTATTCCTGGAGTATGTGGTTTCTAATGTATAG AATCTTTTATTTTTCTTTGATTTTTTTGTTTCATCTTTTGTTCATTTGCTAATAATGTATTATTCCTTTACAGCTATGCT ATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAATCGTTAAACAGCATTTGGAAGTAGCCGTAGTCATGAGAA ATATTTTGATTTTGCCCATGTACTTCATTTATTAAACTTAACTGTTTTTGAATCTTGGTGTAATACTTTTGCTGGTTACT TTTCAGTGTTTTGTTGGTGAATTCACATTTTATGGACAATTTTTATAAGAAGTGGCAATGTTTTTCAAAAATCATTATAG TTTTTCTTATGTTCGTACATTTGAAGGAAAATTGCTTTGTTATAATAGTCATATTAAATTAATTAAAACTTCTCAATTTA TTTTTACATTTCCCGTTGTTTTATTATAAAATTGATGGGATCTTCTATAAATTTGTAAACATTTAGGATGAAAGATATAG TTGGAACATTTATGAATCAGAAATTGTTTTTAAAATATATAGGCCCAAATCAAATTAAGGGTAACATAGTGTCGAACTTC TCAAGAGATTAAACTAAGTTATGACAAAAAGCAGGGAAACACTAGATTAAGCTAAGTTAATTTGTAAGTTTTTTACTGAA TATGTTTTTAGCATTTAGGCACAGCCGAGTTTGTAATTTGGACTCTTTAACCCTGTGTTTGATAGAAAACTCAATAACAA ATACTCCCTCCGGTCCTATTTATAAGCATGAAAGAGAAGAAAAATCTTAGTCCTTTTTATAAGAACCAAATGAAAGTTTG AG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0742600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGAAACCGTCGCTGTCGAAGTTGATCCCTCCCAAATCGAGGTCAAGCTCTTCAACAGGTGGAGCTACGACGATGT TCAGGTTACTGACATATCTTTGGCTGATTACGTCGGAGTGGTGGCATCGAAGCACGCAACATATGTTCCTCACACTGCTG GTAGGTACTCTGTCAAGCGTTTCAGGAAGGCCCAGTGTCCTATCATTGAGAGGCTCACCAACTCTCTCATGATGCACGGG AGAAACAATGGAAAGAAATTGATGGCTGTCAGGATTATCAAGCATGCTATGGAAATCATTCACTTGCTGACTGACCTCAA CCCAATTCAAGTTATCGTCGATGCTGTCATCAACAGTGGTCCTCGTGAAGATGCAACCCGAATTGGGTCTGCTGGAGTTG TTAGGCGTCAAGCTGTTGATATTTCTCCCCTTCGCCGTGTTAACCAGGCTATCTACCTCCTAACAACAGGTGCACGTGAA GCGGCTTTTAGAAACATAAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAACGCAGCAAAAGGTTCATCCAACAG CTATGCTATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAATCGTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0742600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAETVAVEVDPSQIEVKLFNRWSYDDVQVTDISLADYVGVVASKHATYVPHTAGRYSVKRFRKAQCPIIERLTNSLMMHG RNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARE AAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF002122
1 204 204 7.9E-41
IPR000235
Gene3D
G3DSA:1.10.455.10
2 204 203 1.6E-100
IPR036823
PANTHER
PTHR11205:SF36
3 204 202 6.1E-132 –
PANTHER
PTHR11205
3 204 202 6.1E-132
IPR000235
TIGRFAM
TIGR01028
15 204 190 1.4E-89
IPR005716
CDD
cd14867
17 204 188 4.08479E-135
IPR005716
SUPERFAMILY
SSF47973
17 204 188 2.22E-66
IPR036823
Pfam
PF00177
59 204 146 3.3E-36
IPR023798
ProSitePatterns
PS00052
70 96 27 -
IPR020606

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of
GO:0015935
Cellular component Small ribosomal subunit The smaller of the two subunits of a ribosome.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0742600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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