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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0743800 |
| Transcript ID | LotjaGi1g1v0743800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NPL4 family protein; TAIR: AT2G47970.1 Nuclear pore localization protein NPL4; Swiss-Prot: sp|O82264|NPL42_ARATH NPL4-like protein 2; TrEMBL-Plants: tr|I1JQF4|I1JQF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0743800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131732575..131736867) extracted from Lotus japonicus Gifu genome v1.2.
GGATTAAAATAAAATTATATTAGATAGACTTGAAATTTATATCATAATCAATTAAAAGATAAGAAATCAGAATTGATATT TTCTTTTCTCTTACGAAAAAAAGAGAAGATATCTCTACAAAATCACCCCAATCAACCTTTCCCCTTCACCATCGGTAGTT CTTTTCGTTCATCGCAGCTTTTCTACTAGAACAAGAAACAAACAATCTTCCCCTTTTTCTCAACACTTCTTCTATTCCAC TCCAACCAAAATTCTCCAACACCAACACAACACATTGCAACATCGTTGTTGTCGTGAATTCCGAATCTGAAACAAACCGC CACCACAACCACCACCATGATGCTCAGAATTCGCAGCCGCGACGGCCTTGAGCGAGTCACCGTCGACAACCCTCACACCA CAACAGTCTCAGAACTGAGAAGGCTAATCGAGCACCAGTTAGGAATCCCAACCCACAACCAAACCCTCTCCACCAACCAG AACCTTCTACTCTCCAAGTCGCCGGAAGATCTCCTCCGATTCACCGACATGACAAACCCTAACGCGCCTCTCTCCGCTCT CAACCTCGGTCACGGCTCCATCGTGTTCCTCGCCTACGACGGCGAGCGGAGGGTGCCTGGCCCCGCCGTCTTCAGCCCTG CCGGCTCGTTTGGCCGGAAGATGACCATGGACGATCTCATCGCCAAGCAGATGCGGGTTTCCCGCCAGGAGAATCCTCAC TGCGAGCTTGTTTCATTCGACCGCGACTGCGCCAACGCGTTCCAGCACTATGTTAACGACTCGCTGGCGTTTGCGGTGAA GCGCGGCGGGTTTATGTACGGTACTGTTTCTGAGGAGGGGAAGGTTGAGGTGAACTTCATATACGAGCCTCCGCAGCAGG GAACGGAGGAGAGTCTGCTGTTTTTCAGGGACCCGGAGGAGGAGAAACTGGTGGGTGCTATTGCGGCGGGGTTGGGGATG AGGAGTGTAGGGTTCATCTTCACGCAGACGGTGAGTCAGGCGAAGAAGGACTATACTTTGTCCAACAGGGAGGTGCTTCA GGCCGCGGAGTACCATGCTGAGAGTGGCTTGAAGGAGTGGGTTACCGCTGTGGTTAAGCTTGAGGTGAATGAGGAAACGG GTGGTGCTGATGTTCACTTTGAAGCGTTTCAGATGAGTGATGTGTGCATTCGCTTGTTCAAGGAAGAGTGGTTTGATACC GATATTAAGGAGGATCAAGACCCCAAGTTGTCTATAATGAAGAAGGAGGTGGTTGTTGGGGTAAAGGATATCAAAGAAGT TGATAATGATTTCTTCTTGGTCGTTGTCAAAATCTTTGATCATCAGGTATTTCTGTCCTTTGTTGTTTCTCCTTTTCTAT TATTCTTATCAATATTAGGCAGCTTTTGGTAGACAAGTTATAACATGACATGACAGAACTGAACATGTAGATTTGGCAGA TTGTAAACTGGTTATGACTGGACAGAAAAGAACACAGATTTTTGGTGGACACACTCTTATGCATGTTTTGGTTTGGTCTA TATTTAAAAGTGAAAGCATAATAGAACATGATATAAGTAGTAAAAGAGATTCAGTTTGGTTCTACCATGCCAAACATTTT TTATCGCGATTATCTCTTACCATAATTTACCATATTAGCTGAGTTATGTTGCTTGTGTTCTGCCGCTGAGATACCGTTGC AACTTAGTTCTTGTTTCGGGTGCGATGAGCACTACTGGAGTTTGATTTGATGAGGAGTGGAACTGGCTTTGTGGGTTTAG GCATATATGATGAGGAAGAAATTTTGAGGAGAACCATTATATCTTAAGTTCCTTGTCCCTCTAATTAAAAAAAGGCAAAT ACTAACCTGACTTGAGGTAGTTAAGGAATATAAATGGGAAGTTTTTTATCGAAAGTTGTAGCATTCTTTGTTACCAATAC ATGAAATGTTGTACTTTTCAATAAAACTGGCTATTTCTTGATTCCCCAGTTAGGGCCACCCTTAGGGCATTTGTTAGTAG AATCCATTAAAACATAAGATCTCAGCTAAAAGTGCTGATAACTATTAGAGAGAAAGTTATCACTATAGAGACAGATATTT ATTTAGTAGCGTGTCACTTTCTCTTTGGAGAGGCAAGACCTTGGACGGGTGATTTCAATCAATGAGGGGATACCTTCGCT TTTATTTTAAAAATTGTTATTTACTATTTTATTCCATAAACTTTATGCTTGCAGCCTTTTACCTTCTCCTTTTTTCTCTC ATTAATCATTAAACATGGGAAGGGCAATCTTTTTTATTTCACCCAATCCAATCACATCCCTTCCCTTGACATACCATTTT CTCTAAGACTTCGAACATAACATAAATGGCGTTATGGGTTGCATGAGATTTTACTTGATAGGGATGACTGCAAGGGGGGA TAACAAGGTCTTGGTAAGACTGACTTAGGTAAAATTCACTGTTTATAAGTATATACATGGAATTGGAAAAACAGATTCAA AGGACATTAAAAGTTTTTTTGATATATAAAGGTGAATCATAGCATCATACACCTGACTTTTATGTAGGATCAAGTAAAAA TGTCCAATTCATTTACCCACAAAAGATGAGTTAAGTAGTTTTTCCTTTAGTCCCTTAGCTTGCCTAGTTATTATTAGGTA CATATTGAATTTCTTTTGGCTTGAATTATTTAACCTTAAAATAAAGGGTTAATGAAACATGTGAAATGTTGATCTTTAGC AAATTAATATTTGAGATTAATTATGTATATATAGAAGTAGCATATGAGTTCTGTTGAGCATGTGTTTTTATGGAACAGTC AATTGGACTGCATTTAATTTATGGATCCACGTAGTTCAGGAAGAGAGTATCCATCAGTCAATTCCATGTTTTTTAGGATC ATAGGATGTGGATCTTCAATTGATATTTGGTTTCAGTGGATGGTAGTAGAGATCACAAACAGAGTCAAACTACTTTTTTT GCCTATATGGAGTTTAAGGGAGTGAGGTTTCCATGGTAATTGGTGTGACACTATGACCAAGTTGCAGGGCTTGCCTCTCT TTAATAGTGTCTTCTGTTACATGTTCAAGTTTAGTGTGTGCACAACTGCACAAGAATTTAGCTGTGAGTATTACAGAACA CAATAGATTCCAGCTGGACATGGATTCCAATGGATTATCCTTGTAACTTATGTCACGAGCTTGATTCATAGTGACTAGTT CCTTAATCTTTTTTGTTTCTGTATACCTGTCAATTGAACCAAGCATAATTTGGCAGTCACAAAGTTATTCTTTTCTTCCA ATAACACCATAAAAGTCATCTAGCTAGAGAACTACTTGAGAATTGAGTCAAACAGAACATTCTGGTCTTAAAAAGAAGTT ATTTGTGATAAACTGAAACTAAGGAACTGAAACAGCAAGCTTGTATGATGCTGGCCAATTAGAAATTGTTGATATGACAA AAGTTAGAATGCCCATGATTTATTTATTGATTAGATGTGCTGATGTGGTTGGTCAATACTCAATACTATACTACTTAGTA CTTAGAGCATTTTTACTGGTGAGCTCCAAGATTCCATCTTTTATTGTTTGTAAATTATAATGATAGCTGTCCTCATGGAA CTTACGAGTGCAGTGTTGCCAAATTGCAGGGTCCTCTTTCAACAACATTTCCCATTGAGAACAGGAATACTCAAGTGCCT ATGAGGGCACTGAAGAACCATCTTGAACGGACAAAAAATCTTCCATTTGTGAAGCGGATTGCCGATTTTCACCTTCTTCT TGTGTTAGCAAGGTTTTTAGACCTTAACGCCGATGTTCCAGCTTTGACGGAATGCATTCAGACAGAGACTACTGTGCCAG AAGGTTACCAGATCCTCATTGACTCCATGGCCAGCGCTGCTTGATGCTGTATGAAGGTGCTCGGGTGGTGCATACTGCCC CATCGCATTCATGGAATGGTTTTATTTATGATGGTAGACTTGTACATGAATTGCTGCAGAGATCCTGGATCTGTCTTTTA ACTGAAAATGAGCCTGATGTTGTGATTTTAATATTTAAATTGATGATTGGAGATAGCCCTTAAGAGGATTCACTGAATAA TGGTAAGAGTATCTTTTATTTAAATGCCTATGTTCAAGCCTTCAATGCCCACTGGAGCTGGCTCTTGCAGCCCACAGTGG CTTTTACAAGTTAACGGGAGTGTGAAGAACTTCATGATATGCTTCTCGAAGGCTTCCGAGGCATGCGTTTTGTTATCCCA TCTGTGTTACTGGAGACAAATTGATCGGTTAATGGCTATTATCAGTTTTCAAA
CDS sequence (LotjaGi1g1v0743800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCTCAGAATTCGCAGCCGCGACGGCCTTGAGCGAGTCACCGTCGACAACCCTCACACCACAACAGTCTCAGAACT GAGAAGGCTAATCGAGCACCAGTTAGGAATCCCAACCCACAACCAAACCCTCTCCACCAACCAGAACCTTCTACTCTCCA AGTCGCCGGAAGATCTCCTCCGATTCACCGACATGACAAACCCTAACGCGCCTCTCTCCGCTCTCAACCTCGGTCACGGC TCCATCGTGTTCCTCGCCTACGACGGCGAGCGGAGGGTGCCTGGCCCCGCCGTCTTCAGCCCTGCCGGCTCGTTTGGCCG GAAGATGACCATGGACGATCTCATCGCCAAGCAGATGCGGGTTTCCCGCCAGGAGAATCCTCACTGCGAGCTTGTTTCAT TCGACCGCGACTGCGCCAACGCGTTCCAGCACTATGTTAACGACTCGCTGGCGTTTGCGGTGAAGCGCGGCGGGTTTATG TACGGTACTGTTTCTGAGGAGGGGAAGGTTGAGGTGAACTTCATATACGAGCCTCCGCAGCAGGGAACGGAGGAGAGTCT GCTGTTTTTCAGGGACCCGGAGGAGGAGAAACTGGTGGGTGCTATTGCGGCGGGGTTGGGGATGAGGAGTGTAGGGTTCA TCTTCACGCAGACGGTGAGTCAGGCGAAGAAGGACTATACTTTGTCCAACAGGGAGGTGCTTCAGGCCGCGGAGTACCAT GCTGAGAGTGGCTTGAAGGAGTGGGTTACCGCTGTGGTTAAGCTTGAGGTGAATGAGGAAACGGGTGGTGCTGATGTTCA CTTTGAAGCGTTTCAGATGAGTGATGTGTGCATTCGCTTGTTCAAGGAAGAGTGGTTTGATACCGATATTAAGGAGGATC AAGACCCCAAGTTGTCTATAATGAAGAAGGAGGTGGTTGTTGGGGTAAAGGATATCAAAGAAGTTGATAATGATTTCTTC TTGGTCGTTGTCAAAATCTTTGATCATCAGGGTCCTCTTTCAACAACATTTCCCATTGAGAACAGGAATACTCAAGTGCC TATGAGGGCACTGAAGAACCATCTTGAACGGACAAAAAATCTTCCATTTGTGAAGCGGATTGCCGATTTTCACCTTCTTC TTGTGTTAGCAAGGTTTTTAGACCTTAACGCCGATGTTCCAGCTTTGACGGAATGCATTCAGACAGAGACTACTGTGCCA GAAGGTTACCAGATCCTCATTGACTCCATGGCCAGCGCTGCTTGA
Protein sequence (LotjaGi1g1v0743800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMLRIRSRDGLERVTVDNPHTTTVSELRRLIEHQLGIPTHNQTLSTNQNLLLSKSPEDLLRFTDMTNPNAPLSALNLGHG SIVFLAYDGERRVPGPAVFSPAGSFGRKMTMDDLIAKQMRVSRQENPHCELVSFDRDCANAFQHYVNDSLAFAVKRGGFM YGTVSEEGKVEVNFIYEPPQQGTEESLLFFRDPEEEKLVGAIAAGLGMRSVGFIFTQTVSQAKKDYTLSNREVLQAAEYH AESGLKEWVTAVVKLEVNEETGGADVHFEAFQMSDVCIRLFKEEWFDTDIKEDQDPKLSIMKKEVVVGVKDIKEVDNDFF LVVVKIFDHQGPLSTTFPIENRNTQVPMRALKNHLERTKNLPFVKRIADFHLLLVLARFLDLNADVPALTECIQTETTVP EGYQILIDSMASAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 100 | 100 | 1.4E-36 | – | |
| CDD | 1 | 85 | 85 | 1.45151E-24 | – | |
| PANTHER | 1 | 91 | 91 | 4.0E-115 | – | |
| ProSiteProfiles | 1 | 51 | 51 | 9.308 | ||
| SUPERFAMILY | 1 | 89 | 89 | 1.15E-18 | ||
| Pfam | 1 | 50 | 50 | 1.0E-5 | ||
| PANTHER | 116 | 412 | 297 | 4.0E-115 | – | |
| CDD | 120 | 376 | 257 | 1.27253E-69 | ||
| ProSiteProfiles | 131 | 277 | 147 | 14.624 | ||
| Pfam | 158 | 284 | 127 | 5.4E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0743800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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