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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0743900 |
| Transcript ID | LotjaGi1g1v0743900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rho GTPase-activating protein; TAIR: AT4G03100.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|F4JI46|RGAP2_ARATH Rho GTPase-activating protein 2; TrEMBL-Plants: tr|O82460|O82460_LOTJA Rac GTPase activating protein 3; Found in the gene: LotjaGi1g1v0743900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131749147..131752806) extracted from Lotus japonicus Gifu genome v1.2.
GTTGAGGTTCAAAGTTCACGAGAGAGAGAAAGAGAGAGCTTCAAAACCAGGTAACATCTTCAATGCAACACAACAAAACC ACATAAGCAAACAACGAAACTCATCCTCAAATTTCAAATCTCAAAATAATTCTGTCTTCACTCGAGAGAGTTTGTCTTGT GTGTGTTTGTGTGTGAAGAAGAAGAAGAACAAGAAGAAGAAGATAAGAATGACAGGGCCAGTGATGGTGACAAGGGGTGG AGGATGCGGTGGTGGGAAGGGAAGGAGAGGAGGCAGAGACGCCGTCGAAGAAGCAGAGCAGAACCAGGGGTCGCCGGCGG CGTTTTTATTGGCGGCTCTGAAGAAATCTATGGTGGCGTGCAGTGTCGACAGTCCTGATGATGTCATCTCCGCCGTGCAT CCCATGGAGATTGGATGGCCTACCAACGTTAAGCACGTCACTCACGTCACCTTCGATCGCTTCAATGGCTTCCTGGGTCT TCCTCTTGAGTTAGAGGTTCATGTACCTGCTCCTGTTCCCAGTGCTAGGTAGGTTCTTCTTTCTTCACAATTTTTTTTCT CCTTTATAGTCATTTTGGTTTTATTTCATTTCAATTTCAGATGGGGTTTGCTTAAAATGTTATTTTACTTTTCAATTTCA GATGGGGTTTGCTCAAAATGTTTTTTTTTTTTTTCAATTTTTTGTGAGTATATTTCTCTGTGTTTGTGTTAGAGTGAGTG AGTGAGGTTGAAAAATGCATCAAACAAGAGCAATGGTTACTGAGATTGGAGCTGAATGTTGTTGTCATTGACCTTCAATA AGGTTTTTCTGTTGATTTCATTTCAATACTTTCCGTTGGATGGGAGAAAAGTAAAAGAAGGTAGATGAAGCAAAACTGAA AAGTTCAATAGTTGCATTAAAAGACAAATCAAGGCTTGCCTTTATTATTTGCTGAAAAGCACACCTAACGGAAACATTGG ATTTAAAAGTTCTCATATTTTCTTAAAGGCTTTTGACTTCATGAAATGCTAGCCGTTGAGTATGATTTAGTTAAAGCAAG TTTCTGAAAGCTTGTATTTTTGGGGTTTGGGGTAAAGTGGTAAACATGTTGATTGAATGCTTTGTTAGCCAAATAATCAT ATTGGATTAGGATTGATTCATGATAATTTTCAAAAGGCCATTGGCTACAGTGAATTTTTGGTTTTCTTTTTTCAAAAGCT ATTAAGTCAAATATTTATGTCTAAGTTTTCTTCTTCACTAAACCTCAGATTGCAAGAATATGTCTTTATCCTATGTTTCT TTATCCACACGTTCTGATGTGATTTGCCATCATAAATAATTGCAGTGTTAGTGTGTTTGGCGTCTCAGCTGAATCAATGC AGTGTTCTTATGATTCAAAGGGAAACAGTGTCCCCACTATTCTGCTGCTAATGCAGGAGCGGTTATACTCACAGGGGGGC CTTATGGTAAGTACTGAATTTATGATAGCGCTTAAGGGACCAATGAATTTCTTTTACACATTGTGAGATTGACTATCATA TTTTTTTTTATCTCTTCTCAATGAATTTTCAGGCTGAAGGTATATTCCGCATAAACCCGGAGAACGGTCAAGAGGAGCAT TTGAGGGACCAGTTGAATAGGGGCGTTGTGCCGGATAACATTGATGTCCATTGCTTGGCAGGGCTAATTAAAGCATGGTT CAGAGAGCTTCCTTCTGGAGTGCTTGATGGACTTTCTCCTGAACAAGTTCTTGAGTGCAACACAGAAGAAGAATTTGTTC AGCTTGTGAAGCAGCTCAAGCCAACTGAGTTAGCCTTACTTAACTGGGCTCTTGATCTCATGGCTGATGTTGTGGAAGAA GAGGAGCATAACAAAATGGATGCTAGGAATATAGCAATGGTTTTTGCTCCAAATATGACTCAGGTGTGCTTTCATACCAT TTCAGCTTAAACTTTAAGTACAATTGTTTTAAGTAATTATTCATGTATACATAATTTACTTTTATTTTACATGTTAATTG TCTCATCCATATTTCTTTTGTGTAATATGGAGTGAAAAAGAATAATCTATCATCTTTGTAAAATTGATTTTGGTAAAATT AAGTTGAAAGTGAGTGATTTATGTTTCTATACATTTATGAAAAAGTGAATTTTGTTGGGTAGTGTTGTGAAATTCATTTG TAAAACTCATAATTGATTATGTTCAACGCATAAGCTAGTCTCTCTAGCTTCAACCAAAATTGATTTTGGGTTTGAAATCA AATTCTCCAAAATGATTCTTAAACATCAATATTCTAATTCATAATTGATTCTGGGGTTTTCCAACGGGAAACCAAACATG CACACAAGAAATTTGCGCTATTCTCTGTGAAATTAGACTGACTATGCTGTTAGCCTGATGCAGTTAGCTTTGTACACATG CATGATAACTATGCAAACTGAGAAATTGTTATTTTTTTGATTCACAATCTTATTTTTTGTCTCCTGGAACAGATGTCTGA TCCACTAACTGCTCTGATGCACGCGGTCCAAGTAATGAATTTACTGAAGACCCTGATACTGAAGACACTTAGTGAACGTG AAGAAGCAACAACAGCAGGGTATTCATCCATGTCATCTCATTCATCAGATCGCCAATCTGAGGATGAATATGATAGTCAG CTTGAAATGTATACCAGTGCTGAATTGAGAGGGAGCCAGTCAGATTGTGATGATCATGTTAACAATAATAGCCTTAACAG TGAAGAGGAAGTGGATTCTGCGTCTGTAAGTGAGATAGAGGAATGCTTCTTGAAGCAGTTGAATGAGAACAAACAAGGAG GATTCGCAGAGGAACCTGCAAGGAGTACTTGCTCTGGCTATAACCTGGAATCTGCTGTATCATTTACCGATGCGAAACCT GATAATTCGTGCTCAAGTTCTTATGAAGATGACTCGGGAGCAACTCTGTCGGCTGAGGGATCGAGTGCGGAATCAAGTAG TCCATCAATTGGAAGTACATACTGCACCAATGATGTGGAAATGATGGATAAGTTTGCAGATTGTGTTTCACTAGTGCCAC TGTTTGCATCAAGTTAAGAACTGAGTTTCTTTGAAGCAGTGTTTTAGTATTTTGTTTTAGATTTTGTCTCCACAAGCAGG GTTGCTTGTGTATATTAATTTGCTTGTTGTGGGTTGTGGAGTCGTTATGTTGTTCAGTTTAGGGCTGAATTTGTCCTGAT TCTGTTTGTCCATAGTACTGGACAATTCTGACATGTGGGGATGGGTATAGTTGCCACTTACATTTTCATATTTCACATAG GTAGATGTTGTTTTCAGCATTGATGAATGCTTAGGGACTAGGGAGATTGTTTAAGCCTGAATATGGTGCTTGCTATGTAT GTTGTGCATGATCAAAATTTGATGCGTTCTTGGTTTCACGTTGTCTTTCTGCGTTTCACTCAAAAGTCTCGTTAAAACCA ACGCTCCCTTGTGTAGCGTCCGCGTTAATGTAGCTCAGATTGTGCGCGTAACACAGAACCAAAGACACAATACATCACTA TTCAAGTAGTGATTCAAGCAATCAAGTCAGCATGGTGCTTGCTACTATGTGTTGGCATAAACCAGGAAACAGTATGGGTG TGCATGATTAAAATTTGATGTATTTCATATTACATCACTGTAACAAGTTTAAAATCCGAC
CDS sequence (LotjaGi1g1v0743900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGGGCCAGTGATGGTGACAAGGGGTGGAGGATGCGGTGGTGGGAAGGGAAGGAGAGGAGGCAGAGACGCCGTCGA AGAAGCAGAGCAGAACCAGGGGTCGCCGGCGGCGTTTTTATTGGCGGCTCTGAAGAAATCTATGGTGGCGTGCAGTGTCG ACAGTCCTGATGATGTCATCTCCGCCGTGCATCCCATGGAGATTGGATGGCCTACCAACGTTAAGCACGTCACTCACGTC ACCTTCGATCGCTTCAATGGCTTCCTGGGTCTTCCTCTTGAGTTAGAGGTTCATGTACCTGCTCCTGTTCCCAGTGCTAG TGTTAGTGTGTTTGGCGTCTCAGCTGAATCAATGCAGTGTTCTTATGATTCAAAGGGAAACAGTGTCCCCACTATTCTGC TGCTAATGCAGGAGCGGTTATACTCACAGGGGGGCCTTATGGCTGAAGGTATATTCCGCATAAACCCGGAGAACGGTCAA GAGGAGCATTTGAGGGACCAGTTGAATAGGGGCGTTGTGCCGGATAACATTGATGTCCATTGCTTGGCAGGGCTAATTAA AGCATGGTTCAGAGAGCTTCCTTCTGGAGTGCTTGATGGACTTTCTCCTGAACAAGTTCTTGAGTGCAACACAGAAGAAG AATTTGTTCAGCTTGTGAAGCAGCTCAAGCCAACTGAGTTAGCCTTACTTAACTGGGCTCTTGATCTCATGGCTGATGTT GTGGAAGAAGAGGAGCATAACAAAATGGATGCTAGGAATATAGCAATGGTTTTTGCTCCAAATATGACTCAGATGTCTGA TCCACTAACTGCTCTGATGCACGCGGTCCAAGTAATGAATTTACTGAAGACCCTGATACTGAAGACACTTAGTGAACGTG AAGAAGCAACAACAGCAGGGTATTCATCCATGTCATCTCATTCATCAGATCGCCAATCTGAGGATGAATATGATAGTCAG CTTGAAATGTATACCAGTGCTGAATTGAGAGGGAGCCAGTCAGATTGTGATGATCATGTTAACAATAATAGCCTTAACAG TGAAGAGGAAGTGGATTCTGCGTCTGTAAGTGAGATAGAGGAATGCTTCTTGAAGCAGTTGAATGAGAACAAACAAGGAG GATTCGCAGAGGAACCTGCAAGGAGTACTTGCTCTGGCTATAACCTGGAATCTGCTGTATCATTTACCGATGCGAAACCT GATAATTCGTGCTCAAGTTCTTATGAAGATGACTCGGGAGCAACTCTGTCGGCTGAGGGATCGAGTGCGGAATCAAGTAG TCCATCAATTGGAAGTACATACTGCACCAATGATGTGGAAATGATGGATAAGTTTGCAGATTGTGTTTCACTAGTGCCAC TGTTTGCATCAAGTTAA
Protein sequence (LotjaGi1g1v0743900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTGPVMVTRGGGCGGGKGRRGGRDAVEEAEQNQGSPAAFLLAALKKSMVACSVDSPDDVISAVHPMEIGWPTNVKHVTHV TFDRFNGFLGLPLELEVHVPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQ EEHLRDQLNRGVVPDNIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVKQLKPTELALLNWALDLMADV VEEEEHNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLSEREEATTAGYSSMSSHSSDRQSEDEYDSQ LEMYTSAELRGSQSDCDDHVNNNSLNSEEEVDSASVSEIEECFLKQLNENKQGGFAEEPARSTCSGYNLESAVSFTDAKP DNSCSSSYEDDSGATLSAEGSSAESSSPSIGSTYCTNDVEMMDKFADCVSLVPLFASS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 452 | 452 | 1.6E-231 | – | |
| MobiDBLite | 1 | 30 | 30 | - | – | |
| PANTHER | 1 | 452 | 452 | 1.6E-231 | – | |
| Gene3D | 64 | 99 | 36 | 5.6E-8 | ||
| Pfam | 67 | 95 | 29 | 3.3E-5 | ||
| SMART | 68 | 102 | 35 | 9.4E-8 | ||
| ProSiteProfiles | 68 | 81 | 14 | 7.618 | ||
| Gene3D | 101 | 293 | 193 | 4.7E-36 | ||
| SUPERFAMILY | 109 | 287 | 179 | 2.16E-37 | ||
| ProSiteProfiles | 113 | 294 | 182 | 24.526 | ||
| SMART | 127 | 290 | 164 | 1.4E-30 | ||
| CDD | 130 | 280 | 151 | 3.44519E-31 | – | |
| Pfam | 130 | 265 | 136 | 3.0E-20 | ||
| MobiDBLite | 298 | 353 | 56 | - | – | |
| MobiDBLite | 325 | 352 | 28 | - | – | |
| MobiDBLite | 399 | 433 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi1g1v0743900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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