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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0744100 |
| Transcript ID | LotjaGi1g1v0744100.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT4G03110.1 RNA-binding protein-defense related 1; Swiss-Prot: sp|Q8LFS6|BRN1L_ARATH RNA-binding protein BRN1; TrEMBL-Plants: tr|A0A072UF20|A0A072UF20_MEDTR RNA-binding (RRM/RBD/RNP motif) family protein; Found in the gene: LotjaGi1g1v0744100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131760673..131766359) extracted from Lotus japonicus Gifu genome v1.2.
TTGCAATGAATTGAAGATCCAAAAAAGTTTGGCATCTCAATTTGCCTGCGACGACCCTCAAAATTCGAAACCAACCAAAT CTCACACACAGAAGAGAGAGAAACTTAGAGAGAGAGAGAGAGAGAAACTCGGAGCGAGAAACACTCACTCACCCTCAGAG AAGAAGAAGAGAGAAGAAGAGACATTGATGGCGGATGCGAAGGAAGAGAGTAGTAAATCTAGCACCGGCGGTGGCGGTGG CGAGGAAGAGGAGAGTGTGAAACTGTTCGTAGGGCAAGTGCCGAAGCACATGACGGAAGATGAACTGCTCACAATGTTCA AGGAGTTCGCCTTGGTCGATGAAGTCAACATCATCAAGGATAAAGCCACACGCGCTTCTCGAGGTCAATTTCATTTCTCC TCTCGCATTCTCCGCTCTCTCTTCAAATCTCAAATCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAATTCAACCCTAATT TCCCGCTCCACTTGCAGGTTGTTGCTTCGTGATTTGTCCTTCCAGAGATGAAGCTGATAAGGCAGTCAATGCGTGTCACA ACAAGAAAACGCTACCCGGGGTGAGTCATTCGTCATTCGTCATCTTCTCATCCCTATTTTTGTGCAATGTTGTGATTCTG TTGGGTATTAATGGCTGCTGCTGTTGCTACTTTAATAGTCATTGATTGATGCTGACGAGTACTGCTTTTTAGTAGTGAGT GAGTGAGTGTGTCTTAATTTGGCAATGGCGTTTGTCTAATTTTAGCAATTTATGTAGCGGTACCTACTATTTTTGGGTAA CCGCTTCAATTCACTCTTTCGGCTTTCATGATTGGTATTAATTTGGTGTGTTTTCTTTTCAAGTTTTCATATTGGTCAAT GGAAGCCCCTGGGTCAAGTTTCTGATTTTGATGCCAATGAATGAGTCATTACTATCTTAGTTACATTTTAGTTAGTCTGA GCCTCACATGCATAGGCAGCTGAGCACTAGCAGGTGCAGATGCAGAAATGAAAACCAATTCCTGCAGAAGGTTATTATAA TGTATTGATGCAGCAGCATTACATATTGTTTGGTGCTTTGGTTGGAGGGGAATGGAGGAGAGGGGAGGGGAAAAGAGGGA TTTTTTTTATACTGAGTTTTGTTCAGATTTTAGGAGGGAAGGAGAATGGAGGGAGGCAAAAACCCCTCATAACTCATTTT TTTTGTCTCCCCTACAAAAGTGGAGGATTTTTAGGGAAAATCATTGGATGACAAAAATGCCCTTCCTCGTGTTTGGAAAC TCAAAATTATATTTTAAAATCAAGGGCAATGGAAGTAAATTTGTTTTAAAAACTTGAACCAAACAAGAAAGAGGTTGTTT CCCCACCCTTTCCCACCCTTCCCGTCCTCTTAATCAAATGTGATAAGAATTAAAACCCCTCTCCCCCTCTTAAAAGTTAT GGAATTTATGTTTCTTATTGTGTAGTCCAATAGAAATCATTTTGACAGTGGATTATTCTTCTTTCAGAAGATGTTTCTTT TCTATTAACTTTTTGGGATTTTCTGACATAAGAATTATATGATTTGGCTCCTATAAAGTGCGGGGGCTCACTTTATCACT TTAGAAAATAAAGTGTAAGGATAACCATTAATTGAAAAATCATCAGTTGAACTTGTGATACAACATATTTGCATCCATGA CAAATGAAGTTACTTAAATCTCAACAGTTGATTTTCTGACAGACAGTTTTACTTTAGCATTTTATCTTCTCAAGTGTAGT TGCTCACTTTAGGAGCTAAATCCAAATTCATATTAACATACATATACCCTTCTAGGTCATGCTTCACTATAAGGAGGTCA CTAATATTCAAATTTGGGCTTCTTACTGCATGATGAGTTGTGTTTGTTTGACTATTCCAGATGGTTATGAACTAAATATG TTAATATGATTGAAAAAAGTTGGTTTCTTAATTACCCAAAACTTTCCATGGAGCAATGAAGTAATGATCTAATGGATGTT AATCTTGCTTCAATAACCCTGTGTGATACGTTTATTTTCATTCTGATTGGGAAGCATCCTGTGTTTTCATCTGACTCAGG CATCTAGTCCGTTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGGTGTGATATTTTTATTATTTAATTAAAAA AATTGTTCGGTAGATCAACTTCTTAAGTTCACTTTTGCTGAAATTCCTTTGTTATTCACTTATGTTTGAATCAGAACACA AGCTCTTCATTGGCATGCTTCCAAAAAATGTTTCTGAAGTTGAAGTATCCGCACTTTTCTCCAATTATGGAACTATAAAA GATTTACAGATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTGCTCACTTTACAGCTTAATTCATCCTTTATTCTTCTAG GGCAATATTGTTTCTTAACCACAAGGTTTTATTCACATTTCTACTATTTTCTGGTAGGTTGTGCATTTTTGAAGTATGAA ACCAAAGATCAGGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGTAAGTGTTCACTGAAACCATCA CTAAATTTTTTAGTCCTACTTTTATTGTGGTAGAAGTGGAGCTAGTAGTGTAATATAATGAACGTGTTCAAAATTTTCAT CTATTTCTGTATTTTATTGATGTAGTGAAGGAGACAGTTAGATTTAATGTACGTGATGGATCTTATTGTTATCTGATTGT TAATGTTTAGCAGTTCAGTGGTACTATCTGTAGTTTTGCTGTTGCAATGTGTGCAAAGACAGGGCTTTATGACCGAAACC ATGACTAAGATGGCAGGCCAGGATTAATCATTCATACATCGCATGGACTATTTTATATAGGACATGGTTTTTGGCTTAAA TGTGATAGAATGGAAAGTGCATGTTTTTAAACTTAATTACAATTTTAGTTGTAAATGGTGTTTGCAGTATTTTGGACCTT CAAGCGGCATTCAGCCACAAAATCCTGTTGGTGAGGAATGGGTTTGGATCCTCTCCATCCATGTTCCCTCCATCCTCTCT CCATCCAAATCTGAGCCATTGATTTTGAAATTTAAAGGCTTGGATCAATTTAAGAAGAGAGAGAAAAAATGAATTGTATT TAAAGGCTTGGATCAATTTAAGAAGAGAGAGAAAACATGAATTAATCCTCACCTTTAAAATTTAAAATCGATGGCTCAGA TTTTGGATGGAGAGGGGATGGAGAGAAGTTGGATGGAGAGGATCCAAATCCGTGAGGAATGTAAACATTTAATTTAATCA TATGTAGTTATATTATATATGAAATATGTAGATTCATGAATTAAAGCTCACGAACTTGCAAAATGGTGCCACAGTGGGGT TGCACTAGCAAATTATCCATTCACAACCAAATGGATTAGGATATACTAAAAAATTACATTTTCTGTTGGCAACTATTCTT CAAGTGATATTACTGACAAAGAATGACGTTTGATACTTCTTTCTTGTACTGCGTTTGAATTACTTAGTCATTTTTTTTTG TTTAGTCAGTCTTGTTCTCTACACTAACGGCAATTGTGATCTGATATTTGTTTTTCTTCCGTAGGGATCTAGTGTTCCTT TAGTTGTAAAATGGGCTGATACTGAAAAGGAAAGACAAGCTCGAAGAGCTCAGAAAGCGCAGTCCCAAGCTTCTAATGTA CCTCATGCTGATTCTCAGCACCCCTCATTGTTCGGAGCCATGCCTATGGGTTATGTTCCTCCTTATAACGGATATGGTTA TCAGGTTAGCTCTATTATAATACACCGTGATACTGTAATGTAGCAATTTTTTCTTTATTCATGCAATTGTTCTTTGGCAT AATCATGCAATTGTTCTTTGACATAATCATGCCATCCCATAAGAAATCATTACATCTATGTATTAATGCTGTTCTTGATG GGATTTGTCTGTGATCATCTTTTTCTCTTCATAGGCTCCTGGCAGTTATGGGCTCATGCCATACCGGATGCCACCAATGC AAAATCAACCTGGTTTCCATAATATGATGCCTCACATGAATCACGGGAATGCATTGCGGCCCGATCTTGGTCCTAGTATG AACCCTAGAAATTATCATGTGCCCCCGGCAAGTTATGTTAGCTCTTATCCTGCTGTGCCAGGTCTACAACATCCAATGGC GTATCATGCAGGAATGATTAGTCCAAGGCCTATGAGTAGTCCTCCTGGTTCTGTTTCACCTGCTGGTGGAAATAGCAACT CTGGTACACCTTCAGGACCAAGTAAAAATTCCGGGGGTCAAGTTGAAGGTTTGTTATCTATGTCTTATACGTGCTTGGGT ATAAATGGATTCATTCGCTGATGTATATTTCTATTTTTATCACCGCTCTTTCCTTACAACAAGAAAGGTTACTAGGTGAT ATTCTGCTTATTACTTAATTTTGTTACTTAGGTCCACCTGGTGCCAATCTATTTATTTATCACATACCTCAAGAATTCGG AGATCAAGATCTTGCCAATGCTTTTCAACCATTTGGTAGAGTTATAAGCGCTAAAGTTTTTGTTGATAAAGCAACCGGTG TTAGTAAATGTTTTGGTAAGCCTATGACTCCATTTGTTGTTGAATTTGATGGGTTTTGTGTGGTGCTTGTGTTTAATGAG CTCTGTTTGCAGGGTTTGTTAGCTATGATTCACCAGAAGCTGCTCAATCCGCCATTAGTATGATGAATGGATATCAACTA GGAGGTAAGAAATTAAAGGTTCAACATAAGAGGGACAACAAACCGGGTAAACCTTACTGATGAAGCTGAACAATGGGGGT TTTGTATAATTCACATTGTAATTCATGACCACTCTGATGTTAATACAATTTGTAATTTCTGTAACATCAAAGTTCATTTA GACATTGATTATTAATTTATTGATTTTTCTTTCAGAACTTGTATTGATTGTATTATCTTTTTTAGTTTTAATTCCAGGAT CAGAGGACAACTTTCCGTTTGGCTCCCTTGGACAACATCCATGGTCTTCCATTTTCAACTTATTTCTTACCTTTTGTGTA TATTTAGTAAGGGATATTGTTTCCATATCAGCCACGGTCTCTTTTTTAGCCTATTAGCCAATTGTCAGCAGCATCATGAA ATTTTATGTATTCTCAAAGTAATGCATGGATTGAAATAAAGCATAACATGTGGCATATTAAATTAAACATGTAGCAACAG ATTAATAATAATTTACATTATAATACAGTTAAAATTAGAAACTTTAATAAGTGGTTGGTGAGTTTTTGTTAGTATCTGTG ATGTCTAGCATTTCAGGATCTAAGTTATGGAGCTTAGCATTACAAAATGCTAATAATTATAAGGAAATAAATATTATATT AAGTAAAATTAAAAGGGATATTTGAACAATTTTTCAACCTTTAAAAACGTGTATAATAAATTAAGAAAAATACAATTTAA ATGCATGTGGCAAGTGGCTACTATGGCAAGTGGCAACTATGACAACTGGCAAGTGTAGATTACTTACCAGATAGATTCCT TGCTTGAGTGATGGTGGAGATTCCTATGGGCCCTCTGGCCGACAGTAAATAAGGTATAGAGTAGTAATTGTATGTTTTCT TCTGAATAAAAAGAGTAATTATATGTAAAGATACCGTTTACTAATGGCAATATCCAATTGGCATACACGTTAGCAAACCG CTGTTAT
CDS sequence (LotjaGi1g1v0744100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGATGCGAAGGAAGAGAGTAGTAAATCTAGCACCGGCGGTGGCGGTGGCGAGGAAGAGGAGAGTGTGAAACTGTT CGTAGGGCAAGTGCCGAAGCACATGACGGAAGATGAACTGCTCACAATGTTCAAGGAGTTCGCCTTGGTCGATGAAGTCA ACATCATCAAGGATAAAGCCACACGCGCTTCTCGAGGTTGTTGCTTCGTGATTTGTCCTTCCAGAGATGAAGCTGATAAG GCAGTCAATGCGTGTCACAACAAGAAAACGCTACCCGGGGCATCTAGTCCGTTGCAAGTGAAGTATGCAGATGGCGAGTT GGAAAGATTAGAACACAAGCTCTTCATTGGCATGCTTCCAAAAAATGTTTCTGAAGTTGAAGTATCCGCACTTTTCTCCA ATTATGGAACTATAAAAGATTTACAGATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAA ACCAAAGATCAGGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGATCTAGTGTTCCTTTAGTTGT AAAATGGGCTGATACTGAAAAGGAAAGACAAGCTCGAAGAGCTCAGAAAGCGCAGTCCCAAGCTTCTAATGTACCTCATG CTGATTCTCAGCACCCCTCATTGTTCGGAGCCATGCCTATGGGTTATGTTCCTCCTTATAACGGATATGGTTATCAGGCT CCTGGCAGTTATGGGCTCATGCCATACCGGATGCCACCAATGCAAAATCAACCTGGTTTCCATAATATGATGCCTCACAT GAATCACGGGAATGCATTGCGGCCCGATCTTGGTCCTAGTATGAACCCTAGAAATTATCATGTGCCCCCGGCAAGTTATG TTAGCTCTTATCCTGCTGTGCCAGGTCTACAACATCCAATGGCGTATCATGCAGGAATGATTAGTCCAAGGCCTATGAGT AGTCCTCCTGGTTCTGTTTCACCTGCTGGTGGAAATAGCAACTCTGGTACACCTTCAGGACCAAGTAAAAATTCCGGGGG TCAAGTTGAAGGTCCACCTGGTGCCAATCTATTTATTTATCACATACCTCAAGAATTCGGAGATCAAGATCTTGCCAATG CTTTTCAACCATTTGGTAGAGTTATAAGCGCTAAAGTTTTTGTTGATAAAGCAACCGGTGTTAGTAAATGTTTTGGGTTT GTTAGCTATGATTCACCAGAAGCTGCTCAATCCGCCATTAGTATGATGAATGGATATCAACTAGGAGGTAAGAAATTAAA GGTTCAACATAAGAGGGACAACAAACCGGGTAAACCTTACTGA
Protein sequence (LotjaGi1g1v0744100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADAKEESSKSSTGGGGGEEEESVKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADK AVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYE TKDQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHADSQHPSLFGAMPMGYVPPYNGYGYQA PGSYGLMPYRMPPMQNQPGFHNMMPHMNHGNALRPDLGPSMNPRNYHVPPASYVSSYPAVPGLQHPMAYHAGMISPRPMS SPPGSVSPAGGNSNSGTPSGPSKNSGGQVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGF VSYDSPEAAQSAISMMNGYQLGGKKLKVQHKRDNKPGKPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 7 | 435 | 429 | 5.4E-226 | – | |
| PANTHER | 7 | 435 | 429 | 5.4E-226 | – | |
| SUPERFAMILY | 16 | 107 | 92 | 1.03E-19 | ||
| Gene3D | 17 | 108 | 92 | 1.5E-23 | ||
| ProSiteProfiles | 24 | 105 | 82 | 14.129 | ||
| PRINTS | 24 | 39 | 16 | 1.1E-7 | ||
| SMART | 25 | 101 | 77 | 6.0E-18 | ||
| CDD | 25 | 101 | 77 | 3.22036E-38 | – | |
| Pfam | 26 | 90 | 65 | 8.5E-15 | ||
| Gene3D | 109 | 201 | 93 | 3.7E-23 | ||
| ProSiteProfiles | 112 | 192 | 81 | 15.579 | ||
| SUPERFAMILY | 112 | 435 | 324 | 8.15E-43 | ||
| SMART | 113 | 188 | 76 | 1.7E-16 | ||
| CDD | 113 | 188 | 76 | 1.0465E-34 | – | |
| Pfam | 114 | 177 | 64 | 7.7E-16 | ||
| PRINTS | 117 | 132 | 16 | 1.1E-7 | ||
| PRINTS | 132 | 144 | 13 | 1.1E-7 | ||
| PRINTS | 173 | 190 | 18 | 1.1E-7 | ||
| MobiDBLite | 194 | 217 | 24 | - | – | |
| MobiDBLite | 202 | 216 | 15 | - | – | |
| MobiDBLite | 312 | 354 | 43 | - | – | |
| MobiDBLite | 325 | 346 | 22 | - | – | |
| Gene3D | 327 | 432 | 106 | 1.4E-27 | ||
| ProSiteProfiles | 355 | 433 | 79 | 17.541 | ||
| SMART | 356 | 429 | 74 | 6.8E-25 | ||
| Pfam | 357 | 427 | 71 | 2.4E-18 | ||
| CDD | 357 | 429 | 73 | 3.25309E-46 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Ribonucleoprotein complex | A macromolecular complex containing both protein and RNA molecules. |
Expression pattern of LotjaGi1g1v0744100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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