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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0745700 |
| Transcript ID | LotjaGi1g1v0745700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein TRANSPORT INHIBITOR RESPONSE 1; TAIR: AT3G62980.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q570C0|TIR1_ARATH Protein TRANSPORT INHIBITOR RESPONSE 1; TrEMBL-Plants: tr|I1NB13|I1NB13_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0745700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131897694..131901419) extracted from Lotus japonicus Gifu genome v1.2.
CTCACATCCACTCCCATCACCACGTGTCTCCACCACAATCACCGATACCTTAACTCACTTCAAAAACCCCCTCCACCATC ACTTATTTAACCATAGTTAATTTCTAACCACGGTTAAATAATAAAACTTCTTATCCTCTCTGTTTCTCTCTCTCTCTCTC TCACACACAAACTCTTTCTTTCTCTCTCTCTCTCTCTGCAACTTCAAGCTCGTTAATGGCGTCTCAGATCTGAACAGTTC AATCGCACCACACTACTTCACTCTACTCATCACAAAACGACACCGTTTTACCTAGATTTCGCTGTTGTTTTTCATTATGA AGAGAATGGTGTGTTCGTTCCCTGAGGAAGTGCTGGAGCACGTGTTTTCGTTCATTCAGGTCGACACTGACCGGAACGCA ATCTCGCTGGTGTGCAAGTCGTGGTACGAGATCGAACGGTGGTGCAGGAGGAAAGTCTTCGTCGGGAACTGCTACGCGGT CAGCCCGATGATTGTCATCAAGCGCTTCCCGGAGGTGAGATCCATCGCGCTCAAAGGGAAGCCGCACTTCGCGGACTTCA ATTTGGTTCCGGAAGGTTGGGGCGGTTACGTGTGCACGTGGATCGCAGCCATGTCACGTGCTTTTCCTTGGCTTGAGGAG ATCAGGCTCAAGAGGATGGTCATCAGCGACGAGAGCTTGGAGCTCATCGCTAAATCCTTCAAGAACTTCAAGGTGCTGGT TCTTACCTCGTGTGAGGGTTTCACTACTGATGGACTTGCTGCCATTGCTGCCAATTGCAGGTTTTGTTTTGACTTCACTG TTCTACTTTTCGTTTCTTGCTTTTTCTATGCTTGTATGGGTTATTGTATTAGTAGAGTGAAACTCGTTTTTTTCTTATGA ATCATTGTTGGAGTTTGTGGATTCTGGTTGGTAGTTGATGATAGCTTACTTGTTTGGATCTTCGCTTTTTGTATTGTGAC GTGATGATTTTGGGGCTCAGATTTGGAAACTAATTGTTGCAAATGATTATTACAGCTAGGATTGCTTAAGATGCTCTTTT TGTTGCTGTTTGAATCTTACTTTTCTATCATTTGGTTGTTATTTTCAATCACCTGCGTACTATTCAAATCTGAGCTGTTT AACAATTGAACTTTGGAATGTTCTTGTTAATGTTATTTGGTTTTTGATAAATATGAGTGGGTTGCTAATATTGGTGAGTG TAATATGCTAATATGTTGTTAAAATTTAGTTTAGTGTGGTTCAAATTACTACATTATTTACTTCGTAATTACTCTAGAGC ATGCGAGTTGCGGAACTGACGTGTCATGGCACCATCATTGATAAATTCACTGTCTGCTATGCATTGTAGGAATTTGAGGG AGTTGGACTTGCAGGAAAGTGAGGTGGAGGACCTTAGTGGGCATTGGCTAAGCCATTTCCCTGATTCCTACACATCATTA GTTTCACTTAACATCTCTTGTTTAAGCAATGAGGTGAGTTTGTCTGCACTAGAGCGCCTGCTTGGTAGGTGTCCCAACAT GAAGACCCTTCGCCTCAATCGTGCTGTGCCGCTTGACAGATTACCCAACCTACTTCGCCAGTGTCCTCAGCTGGTTGAGT TAGGGACAGGAGTCTACTCAGCTGAGATGAGACCAGATGTGTTCTCAAACCTGGCAGCAGCATTTTCTGGGTGCAAGCAA TTGAAGAGCTTGTCTGGCTTTTGGGACGTGCTCCCATCCTACCTTCCAGCTGTTTACCCTGTCTGCTCTGGGCTAACATC ACTAAACTTGAGTTATGCTACTGTCCAAAGCTCTGATCTTGTCAAGCTTATCAGTCAATGCCCAAGTTTGCAGCGGTTAT GGGTATGTTTGATTTATATCATGCCTTCCATGTATTGTTTTCCCCATGTTTTTGTTTGAAGTACTATTAGTTTAGTGCCC CAGGGTGAGTTCTTATGCTAATTAAGGTCATTGTTATAGGTGCTGGATTTCATAGAAGATGCTGGTCTTGATGTCCTTGC TGCTTCATGCAAGGATCTTAGGGAGCTGAGGGTGTTTCCATCTGATCCATTTGGTTTCGAACCAAACGTTGCATTGACAG AAAGGGGCCTAGTCTCTGTATCTGAAGGCTGCCCCAAGCTCCAATCAGTTTTATATTTTTGTCGTCAAATGTCGAATGCA GCCCTGCATACAATTGCGCGGAACAGACCTAATTTTACTTGTTTTCGCTTGTGTATCATCGAGCCTCAAGCTCCTGACTA TCTTACCCTTCAACCATTGGATTCAGGTTTTGGAGCAATTGTAGAGCACTGCAAGGGTCTTCAGCGCTTATCGCTATCTG GTCTTCTTACTGATCGTGTTTTTGAGTACATTGGGACTTATGGTAAGAAGTTGGAGATGCTATCTCTGGCATTTGCTGGA GATAGTGATTTAGGACTACATCACGTTCTATCAGGGTGTGATAATCTTAAGAAGCTAGAGATCAGAGACTGCCCCTTTGG TGACAAGGCCCTCTTGGCAAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGTTCAGTTAGTTACG GAGCGTGTAAGCTGCTAGGTCTGAAAATGCCCAAACTTAATGTTGAGGTTATTGATGAAAGAGGACCTCCAGATTCAAGG CCAGATAGTTGTCCTGTTGAGAAGCTTTATATATACAGGACTATTGCTGGTCCAAGGATGGACATGCCTGGTTTTGTATA TAGAATGGAAGACGATGATTCTGCTCTAAGGCTTGAGTGATCATACCGTTATAAATCTCCGGTGGAAAATTCTTAATCCC AGGTACAGGGTCAGTATGGAATTCTTTAATGAGTTTCATGTTTCCTGGCTTTATGTAGTTGTAGTTATGGTTTGTGGTTG AGCTAGGTACATGGGGAAGTTCAAAGAAGACTTGAGCTCTATTGCCATTGATCATCTTACAATTTGGCTGAGCCACGTGA TGCCAGTTTACTGAAATAAAGAGACTGAAACTATGTTGTTGTATGTGCATTAGATAAGATACAATTGTCATATTATTCTT CTTCTGACTTTATAATATTTGGGGACTTCAATTAATGCTTCATGTTAGCTCTGTCACGCGTAGCAGGATCTTGGATACTT TGCTAGCGTTCCCAATGAATAATATTCATATTCTATTGTAGTAACCTTGTGACGCATTTATGTCATTGCACCTTGCTTTC TGTTGTATTTAAATTGAAACGAGCCATCGAGTTCCAAAGCGTGTAATGTAATCAAGGGAATGGTTGAGGTATTTTAATTT GCTTTCATTAGACTTTGATTCTTTGACCTTAATCTAAGATCATACCATGTTCCCAATATCCTTGTGTAAGCTTGTAATGG TTTAAAGTTGGAATAGTTTTATCAATCCATGTGACCCTTGAATTTGATCGTCTTTTCACTCAACTTTTTTATTGGCTTGT AAAATAATTTAACCAGTGTTTTAGATAAACAAGAGATTAAATGGAAACTTGATGTCTTCTACCTGAGTCTTATGGGAAAT CCAAATGGAAGGAAATTCAGCAAATGGATCTGTGGTGCTGTCTTCTCTTCTCCTGAAGTCTGGAGGAGCAGTAAGGAAAG CTTTTGAAGTTGCTTGCGTAGAGAAGCAAAATCAGGTTTCAGGTGGGCATAGGGTCAGGATAATTATTGAATGGCCCAGA TTTTGTGGCAGTGGCATTTGAAAAAGCAAAGGAAAGGTCCCTCGGG
CDS sequence (LotjaGi1g1v0745700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGAATGGTGTGTTCGTTCCCTGAGGAAGTGCTGGAGCACGTGTTTTCGTTCATTCAGGTCGACACTGACCGGAA CGCAATCTCGCTGGTGTGCAAGTCGTGGTACGAGATCGAACGGTGGTGCAGGAGGAAAGTCTTCGTCGGGAACTGCTACG CGGTCAGCCCGATGATTGTCATCAAGCGCTTCCCGGAGGTGAGATCCATCGCGCTCAAAGGGAAGCCGCACTTCGCGGAC TTCAATTTGGTTCCGGAAGGTTGGGGCGGTTACGTGTGCACGTGGATCGCAGCCATGTCACGTGCTTTTCCTTGGCTTGA GGAGATCAGGCTCAAGAGGATGGTCATCAGCGACGAGAGCTTGGAGCTCATCGCTAAATCCTTCAAGAACTTCAAGGTGC TGGTTCTTACCTCGTGTGAGGGTTTCACTACTGATGGACTTGCTGCCATTGCTGCCAATTGCAGGAATTTGAGGGAGTTG GACTTGCAGGAAAGTGAGGTGGAGGACCTTAGTGGGCATTGGCTAAGCCATTTCCCTGATTCCTACACATCATTAGTTTC ACTTAACATCTCTTGTTTAAGCAATGAGGTGAGTTTGTCTGCACTAGAGCGCCTGCTTGGTAGGTGTCCCAACATGAAGA CCCTTCGCCTCAATCGTGCTGTGCCGCTTGACAGATTACCCAACCTACTTCGCCAGTGTCCTCAGCTGGTTGAGTTAGGG ACAGGAGTCTACTCAGCTGAGATGAGACCAGATGTGTTCTCAAACCTGGCAGCAGCATTTTCTGGGTGCAAGCAATTGAA GAGCTTGTCTGGCTTTTGGGACGTGCTCCCATCCTACCTTCCAGCTGTTTACCCTGTCTGCTCTGGGCTAACATCACTAA ACTTGAGTTATGCTACTGTCCAAAGCTCTGATCTTGTCAAGCTTATCAGTCAATGCCCAAGTTTGCAGCGGTTATGGGTG CTGGATTTCATAGAAGATGCTGGTCTTGATGTCCTTGCTGCTTCATGCAAGGATCTTAGGGAGCTGAGGGTGTTTCCATC TGATCCATTTGGTTTCGAACCAAACGTTGCATTGACAGAAAGGGGCCTAGTCTCTGTATCTGAAGGCTGCCCCAAGCTCC AATCAGTTTTATATTTTTGTCGTCAAATGTCGAATGCAGCCCTGCATACAATTGCGCGGAACAGACCTAATTTTACTTGT TTTCGCTTGTGTATCATCGAGCCTCAAGCTCCTGACTATCTTACCCTTCAACCATTGGATTCAGGTTTTGGAGCAATTGT AGAGCACTGCAAGGGTCTTCAGCGCTTATCGCTATCTGGTCTTCTTACTGATCGTGTTTTTGAGTACATTGGGACTTATG GTAAGAAGTTGGAGATGCTATCTCTGGCATTTGCTGGAGATAGTGATTTAGGACTACATCACGTTCTATCAGGGTGTGAT AATCTTAAGAAGCTAGAGATCAGAGACTGCCCCTTTGGTGACAAGGCCCTCTTGGCAAATGCTGCAAAGCTGGAGACAAT GCGATCCCTTTGGATGTCCTCTTGTTCAGTTAGTTACGGAGCGTGTAAGCTGCTAGGTCTGAAAATGCCCAAACTTAATG TTGAGGTTATTGATGAAAGAGGACCTCCAGATTCAAGGCCAGATAGTTGTCCTGTTGAGAAGCTTTATATATACAGGACT ATTGCTGGTCCAAGGATGGACATGCCTGGTTTTGTATATAGAATGGAAGACGATGATTCTGCTCTAAGGCTTGAGTGA
Protein sequence (LotjaGi1g1v0745700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRMVCSFPEEVLEHVFSFIQVDTDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPMIVIKRFPEVRSIALKGKPHFAD FNLVPEGWGGYVCTWIAAMSRAFPWLEEIRLKRMVISDESLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLREL DLQESEVEDLSGHWLSHFPDSYTSLVSLNISCLSNEVSLSALERLLGRCPNMKTLRLNRAVPLDRLPNLLRQCPQLVELG TGVYSAEMRPDVFSNLAAAFSGCKQLKSLSGFWDVLPSYLPAVYPVCSGLTSLNLSYATVQSSDLVKLISQCPSLQRLWV LDFIEDAGLDVLAASCKDLRELRVFPSDPFGFEPNVALTERGLVSVSEGCPKLQSVLYFCRQMSNAALHTIARNRPNFTC FRLCIIEPQAPDYLTLQPLDSGFGAIVEHCKGLQRLSLSGLLTDRVFEYIGTYGKKLEMLSLAFAGDSDLGLHHVLSGCD NLKKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYGACKLLGLKMPKLNVEVIDERGPPDSRPDSCPVEKLYIYRT IAGPRMDMPGFVYRMEDDDSALRLE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 44 | 44 | 7.4E-24 | – | |
| SUPERFAMILY | 4 | 39 | 36 | 6.02E-6 | ||
| PANTHER | 5 | 575 | 571 | 0.0 | – | |
| PANTHER | 5 | 575 | 571 | 0.0 | – | |
| Pfam | 6 | 46 | 41 | 3.7E-19 | ||
| SMART | 8 | 49 | 42 | 1.8E-4 | ||
| Gene3D | 45 | 575 | 531 | 1.4E-188 | ||
| Pfam | 65 | 111 | 47 | 1.0E-24 | ||
| SUPERFAMILY | 83 | 517 | 435 | 2.3E-35 | – | |
| SMART | 103 | 127 | 25 | 79.0 | ||
| SMART | 128 | 153 | 26 | 80.0 | ||
| SMART | 370 | 394 | 25 | 13.0 | ||
| SMART | 430 | 453 | 24 | 190.0 | ||
| SMART | 479 | 503 | 25 | 42.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0745700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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