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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0750200 |
| Transcript ID | LotjaGi1g1v0750200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein transport protein Sec24-like; TAIR: AT3G07100.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100; TrEMBL-Plants: tr|K7N2I3|K7N2I3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0750200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132253267..132258219) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGGTGGTCTCAGATCTGGATGACATATTTGTTCCACTGCCAGATGATCTTCTTGTTAACTTATCTGAATCAAGAAG CGTGGTGGATGCCTTCCTAGATAGTTTGCCAACTATGTTCCAGGACAATGTTAATCTGGAATCAGCTTTTGGTCCTGCTC TGAAGGCTGCATTTATGGTTATGGTATGTGAATCCCTTTAAACCTTCTATGGTGAATTTTTTAATCATAATTTTTCGTGC AAGTTTTTTCCCAATAAGTAGTAAACTTAATACATAGGATACAAGTTGCTATTAATTGAATCAAAGTTACGCATAATTTA AGGTATTGGTTTTCAAGGTATAGAATGAGATGAAGTCAGGTGTTCCAAATGCTGACCTAGTCTAATTTAAAGGAAAAGCT TCAACAATAACTGAAAGAAATATTGGCATGTGCTTTATATTTTTTAAAAGTAATAATAATGCAGATATCTCGCTCCTAGA TAATTTAAAATATATAGAATTGCGGTAACAATGGGATTAGACTTTGCTAGTTATTTCACATTTCTTTGGTATTGTGATAC CGAGCTCTTAATCAAATTTAGGGAAAAATAAACCTGATATTTGGAATAGGGAGGTCCAGTTTATGGCATTGTGATATTTG TGCACTTATTTCTTCTGCCAATTATGGGATGTCAACCCTCAATATTTTGGGTACAAATAATGATTGATACTTAGTTGGGT TTGAACTTTGAATCAGTTAGTATTAGTAACTGTATCTGTTAGAAATAGACAGCTGTAGTTAGCTAGCTGATTTAGTTAGT TAGACAAATAGTTGGAGAAGGGATCAGTAGGGTATAAATAATATAAATAATTGAAGGGATGGGTGTGGGAGGGAGGGGTA TTGGGTGCAAATGCCTGGGTTGTAGAGAGAAATACATTTTCTATTGTATTTGTACATTATATGGTCTCTGAACTTGTATC ACATTGATACTGGCCAGAAGACATGGTTTCTCTATTAAAGATTGTTGTTTTCCCCCAATTTTGATCCAGCTCTATTCAGA AACTATTTTACTTATGTGAAAACGACAGAGTTCTGGCTTCCAACAATCCAAACTTTGTGTATTTTAAGATTTGATGCTCA GATAAGGACCTGTTTGTTTAAGCTTTAAGTTAGGTTTAAATATGTTTTTCATCCATCCAAGTATTACCAAATTTGATTTT AGTCCTTCCAAAAAAATTCCTCTTCTGATTCCTAATTTTTCCAAACCATATTTAAGCCTTGCTATTTAGTCACTGTAAGG ACTAGAACCACACAGTTTCGAAAAAAATTGGAGGAAATAAATTATTGGAGGTTCTTAAACCAGAACTCACCATATATAAG GGGATGAAAAACATTATTAAGGTTGTGCAAAATGCAAATAGATTATTTATATTTTGAAGATTTTACATAAAGTATAAGTT ATTTCTTTATCTGGTTACAATCATAAAAACATTTGTTATTTTGAAAGTAGTTAAAATCTTTTTCAGAAGCTCCTCAAAGT AGATTTTCAAATTAATTAGAATTTTTTTTTTTTTAGATCCTGATTATTTTTAATCCTAAACAGACATCCTAAAAACCTTT AGAAATATCTCTTAAAAAACTTGCAAATTTATGAGTAAAATCTGAAACAAACAAACTCTGATGGAACCTGTGCTTGTCTA ATAACACTATCCACCTGGAATTTATTGAATTCTCAGTACATGTTTTCCTGTGCGTTTTACAATTTCATTTTTCCTATCCA TCACTCTGATTTGGCCTTTCAATGCCTCTCTATGTAGAGTCAACTTGGAGGGAAATTGTTAATTTTTCAAAATACACTTC CATCTCTTGGTATTGGTCGTTTAAGGTTACGTGGAGATGATACTCGTGTATATGGAACAGACAAAGAACATGGACTGAGA CTGCCTGAAGATCCATTTTATAAGCAAATGGCTGCTGAGTTTTCTAAGCTTCAAATCTCAGTGAATGTGTATGCCTTCAG TGATAAGTACACTGACATAGCATCCTTAGGTAATTTTTCTTCCTTTCCTCTAACTTTCCCATGCCACACTCTAAAATATG CTAAACCTGCTACTTTGGATTGTAAGACTTCTAATTGATATATAATGATTCTTTTGTTACAACATTGTTTGTTGTTGACT TGAATCCATGAGTTTATGGGCTTTATCTAAGCGTGCTAAAATTATCTTTGATCTATGTTCGTTGTAATACGCTTTTGGAG TATTGTGACCTTGCAAGTGTTTGAACACCTCATGTTGCACATTAATGGTCTGCACTCTGGACTTCACACTTAACAGTATT GCTTTGATATGCAATTAGTTAATGACTTTATTTTGCCTATTTCGTATACTTAATTGAATGATTGCTATATTTTCCCTTGA TGGTGTTGTGATTAAAGATTTGTGGAATATCATCTGATAGTCTGATACTGTCGCTCATGGATGCATTTTTCCCAAAAACA GACTTGTAAATGCTTAATTAGAATTAGGAAATAATGTTTGGTGCCTTGTTATTGTCTGTAAATTATCCCCATCCCCCAGC ACTGCAATTCTGTAATATTTTTTTCTATCAGCATAAGTGGTTCTTGCATGTTAGTGATCTTAAACATGAAGAAGGAAATT GGGTTTTTATGATTTAGTGTCTGTTTAGGAACTCTGGCGAAGTATACTGCTGGTCAAGTGTATTACTATCCAGCTTTCCA ATCAGCCATTCATGGGGAGAAATTGAGACATGAATTAAGGAGAGATCTTATTAGAGAAACTGCATGGGAAGCTGTAATGC GTATTAGATGTGCAAAAGGTCTGTGCATTATGTCTTGAAAATCCTTACCTTCCCAGCCTCCTTTATCTGCTATTTTATGA AACCAATTGCTGATATTGCTTATTTTTCTAGGTGTTCGCTTCACAACTTATCATGGAAATTTCATGCTAAGGTCCACTGA TTTGTTAGCACTTCCGGCCGTAGATTGTGATAAAGCCTTTGCCATGCAGCTATCACTTGAGGAGACATTACTGACAACCC AGACGATGTATTTCCAAGTTGCATTGCTGTATCCTTTCTTCAATAATTCTTAATATGAGTTCTAATGTGTACATAAGCTT TATTGTGGATGATAACTTCTAATTATATGTTGTCACTATTCGAAAAGAAAATACAATGTTATTCTTACAATAAGCATCTA TGTTAGTCATTAGAATCTTGTCTTCCCTATATGTTTAGCATTAAAGGATTCACTTTTCACCCATTGGAACATTAAGTTAT CCCCCACTTCCTCAAAAAACAGATGTAACTATCTCTTTTGAGATGCTGCCCTTAGAATGTCATAGTTTTTTGAAAGGAGT TTGTTCTTGTGTTTATTTCCTAAGAAGTGCAAATAATAATTAAAATAAAAGTTAACCTTATTTTATCCTTTTCATTATTT TGTAGGAGATTCATCTCATCTTATTGTGCTTTGTTTTAACTATTTCTCCTCCACTGTTTATCATTTATGTTCATGTGGAT GTCTCTTAAACTTGATAGTTCATTAAGCCCGTATATTTTGAACGTGAAATTATTTTAAAATGGGTTGCATCCCTAACAAC GAAATAGATACACTGCATCTTGTGGAGAAAGGCGTATCAGAGTACACACGATGGCAGTGCCAGTTGTTACAGACCTGGCT GATCTCTATCGCCTGGCTGATACTGGTGCAATTGTATCTCTTTTTAGTAGGCTAGGTAGGATAAACAAAAATTCTGGTCT AGTGATATCAATGTGGTGATCATGTTTAATTTTATCTTATACAGTTCTTTCATGTTTCCAGCAATTGAGAAAACATTGTC CCAAAAATTGGAAGATGCACGGAGTGCTGTGCAACAGAAAATTGTGAAAGGCCTCAAGGAATATCGAAATCTTTATGCTG TGCAACATCGCTTGGCCAACAGGATGATATATCCCGAGTCTTTAAAGTTCTTAATGTTGTATGGATTAGCTCTTTGTAAA TCAATGGCTCTACGTGGAGGGTTTGGGGATGTTCCACTGGATGAGCGTTGTGCAGCAGGACATACAATAATGACTCTACC AATAAAAAGATTGTTGAAACTTCTCTATCCTAGCTTGATTCGGGTTGATGAATATCTTCTAAAGGTATGCATTGCTGCCC CTGAAAAGTTTTCAATATAAAGGTTGAACTTTCCGAGCCTTGAATTATTTCTGCTTGTGTTCCAGGCATCTGTACAGGCG GATGACTTGAAAAGTATTGAGAGAAGGTTACCTTTGACTGGGGAGAGCTTAGACTATAGGGGCCTTTATATATACGATGA TGGCTTCCGGTTCATTTTATGGTTTGGTAAGGTGATTTCCCCTGATATAGCCAAGAATTTACTTGGAGCAGACTTTGCGG CAGAATTATCAAAGGTATTCTATATTCCTGCCCTATAAAAATAGGTTCCTTATGAAATAATCATACTATTTACATGAAAT CTGATGGTTAAATTTTTGTGACATTCATTCGATATCCAGGACCAAGGTTATCATAAGATTGACATATATTTACATTGCTT TAGATGGATATGATTTTCAATCCATTGAATTAACTTCTTCTATGGTCAACTCAGTATTGAAACGAAGTAGGGTAGATATG TTTGTGCACTTCTTTATTTGTCTATGTGAGTAAAATTGGAAATCCATCTGGTGATGTGCGTAAATTTATGCCCTTTTTAC AGGCTACTCTAATTGAGCATAACAATGAAATGTCAAGGAGGCTGATGAAGGTTCTCGAAAAATTGAGAAATACAGACCGT GCATATTACCAGTTGTGCCACCTGGTGAGGCAAGGTGAACAACCCAAAGAAGGGTTCCTCCTTCTAGCGAACCTTGTTGA GGACCAGATGGGTGGTAACAGCGGGTATGCTGATTGGATGCTACAGATATCCCGACAAGTGCAACACACATAG
CDS sequence (LotjaGi1g1v0750200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGTGGTCTCAGATCTGGATGACATATTTGTTCCACTGCCAGATGATCTTCTTGTTAACTTATCTGAATCAAGAAG CGTGGTGGATGCCTTCCTAGATAGTTTGCCAACTATGTTCCAGGACAATGTTAATCTGGAATCAGCTTTTGGTCCTGCTC TGAAGGCTGCATTTATGGTTATGGCTACTCTAATTGAGCATAACAATGAAATGTCAAGGAGGCTGATGAAGGTTCTCGAA AAATTGAGAAATACAGACCGTGCATATTACCAGTTGTGCCACCTGGTGAGGCAAGGTGAACAACCCAAAGAAGGGTTCCT CCTTCTAGCGAACCTTGTTGAGGACCAGATGGGTGGTAACAGCGGGTATGCTGATTGGATGCTACAGATATCCCGACAAG TGCAACACACATAG
Protein sequence (LotjaGi1g1v0750200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVVSDLDDIFVPLPDDLLVNLSESRSVVDAFLDSLPTMFQDNVNLESAFGPALKAAFMVMATLIEHNNEMSRRLMKVLE KLRNTDRAYYQLCHLVRQGEQPKEGFLLLANLVEDQMGGNSGYADWMLQISRQVQHT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 63 | 63 | 3.6E-48 | – | |
| Gene3D | 1 | 63 | 63 | 2.4E-21 | ||
| Pfam | 1 | 63 | 63 | 8.6E-16 | ||
| PANTHER | 1 | 63 | 63 | 3.6E-48 | – | |
| SUPERFAMILY | 1 | 63 | 63 | 5.23E-16 | ||
| SUPERFAMILY | 62 | 135 | 74 | 1.36E-8 | ||
| PANTHER | 63 | 136 | 74 | 3.6E-48 | – | |
| PANTHER | 63 | 136 | 74 | 3.6E-48 | – | |
| Gene3D | 64 | 115 | 52 | 3.3E-8 | ||
| Gene3D | 116 | 134 | 19 | 3.3E-8 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | ER to Golgi vesicle-mediated transport | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. | ||
| Cellular component | COPII vesicle coat | One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state. |
Expression pattern of LotjaGi1g1v0750200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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