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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0751000 |
| Transcript ID | LotjaGi1g1v0751000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase 1; TAIR: AT1G09460.1 Carbohydrate-binding X8 domain superfamily protein; Swiss-Prot: sp|O65399|E131_ARATH Glucan endo-1,3-beta-glucosidase 1; TrEMBL-Plants: tr|K7KGI9|K7KGI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0751000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132331187..132334200) extracted from Lotus japonicus Gifu genome v1.2.
TTAAGAAAGAAAAAACAGGCTCATTGCTTCTTCTTTTTTGCAGTGATAATGTGATCACACCACAACAACACACTTCCATG ACCATTCTTCGTGACAAAGTAATATCCTTTTTAGTCACAACAAACAACGAACTTGGGTTGTTGTTGTTGTTTTCTTTTGT GTAACCTTTTCACTCCTCTTCACCTTTTCAGTTCTTTGCCATGTTATTAAAACCAACAATGCCTCCCCATGATTCACACT ACTAACATTCCAACAAGCTGGTTCTAAAATCTCAATTCCAGAACACAAGCACTCTTTCACAATGGCCAAGGAAGCTTCTC TATGCCTCTTGCTCCTCTCTGTTCTTATTATTAGCTGCTCTGGTGAGTAATTACTGAAACTTTTGTCACCCAGTAATCAT TAGTAATTGTTTCTACTTCCTGGGGTTGCTTTTGTTTCTGAATCTGCAACTATTGATGTTCAATTTGCTGTCTTTAAACT TTGTGCTTGTTTCAGCAGAGAAAGATTAAATTTTAGTGAAGAACAAAGTTGAGATTTTTACACTCTAATCCTGTTTGTTT TTCCACTCTTTGCAGGAACTCTGGTGGGGTTTTCATATCATGAGACAAGAGATACTCCATCTACAACATCTGCTGGAAAC ACATTCTTCCAGAAAGACAAGATCTTCCAGTCTCAGATTTGGGTTTCTGTAAAGGATCTCAAGATTTTGAGCCCTCTGAG TCTGACCAACTCTGACAAGTTAGTTGATTTCTTCTTAAATAAAATCCTAGTTGAAAATGTTGTTTCTGGTGTTTCATGGG AAAAAGCTCATCTTGTGAGCATTCTTCCACTAGCAGACACCATTAGCATAATTGCTAGATGTGATGGTGGGAGTTTAGGT CAGAATGAGATACCTTTACTTTTTTCCACTCTGAAATCAGTTCATTCAGTTCTCACCAAGCTTCAATTAAGCAGTGAAGT AAAAATCTCGGTAGCGTTTCCGCTGTCATTCTTAGAGAATTTGAGTCCAATATATGAAAATGATCTCCTTAGGGTTCTTG GGTTTATAAAGAAAATAAATTCAATTATCATGATAGAAGATAGCATTGATGGGGAATTAGGCATGGATGTTAGCTTTGTT CAATCTGTTATCAAGCGAGCCTCCCTTGCTGCTTCTATTCTTCCATGCAAAGATGTTCCAATAGTTCTGACAATCAAGAA CTCAATGATTTCCAGTTCATTGGAATTAGCTCAATTTAGTAAAACCGTATCCAAGTATCTTGAAGCAAACTCTCTTATTA CAAAAAGAGTAGTTGCATTATATGTAGAAGCACACACAAGTGTACAGAAAGGGATCAGAAGAGAAGAGGAAGAGATATTA GAGGTTAGCAAAGTCCATATCAGAAGAACTCTAAAAGAAGCAAGCAGCTTACCTACCCCAGTTTCCCCTATAAATCCAGC ATCAGGTGCAGTTATCGCACCCCCAGAAACACCAGCCATCATCACAGTTCCTTCCACCAATCCTGTCACAGTGTCTCCCA CCAATCCTACCACACCTGTTCCCTTAACCCCTACAAATCCTGCCAATTCTCCAGTACCGGTCACCAATCCGGTCACAGCC CCGACTACATTTCCTGGTGCACAACCAGTTACCAACCCTATGGCTTCTTACCCACCCCCATCAGGAAGTGTTCCTGGGGT AAACAACCCCCAGCCTCCTCCTCAAAACACAAATGCTCAAGGGAGCTGGTGTGTGGCGAAGACTGGCATTCCGGAAACAA CTCTACAATTAGCACTGGACTATGCTTGTGGAAAGGGGACTGCAGATTGTTCACAGATACAGCAAGGTGGGAGTTGTTAC AATCCAAATTCATTACAAAACCATGCTTCTGTTGCCTTCAATAGCTACTACCAAAAGAATCCTGCTCCAACAAGCTGTGA CTTTGGAGGAGTAGCCACCATAGTTACTACCAACCCGAGTAAGATCTTAATTTTTTATCCCAAACTTTCATATTAAGCTT CAAAAAATTGAAGGCTAGTTTTAAACAATTCTTTTATTTGTCACTAGGTTCTGGTTCTTGCATTTATCCATCATCTTCAG GAGGCGCTGGCTCATCCGGGTAAGTAAATGCCAAGATTTTTATTTGGCACCTTTAAACCTTCAAGATACTAATCATACCA TTTTTTTTGCAGCTCTATTAGTGCTACCCCACCTTCAGATTTTGGGTCCTCAAGCCCTCCTGATTTGAGTGCCTCACAGT CAGCTGGCGTGAGACCTTTTATTAGCTGCATGGTTCTGGTGATGTCATTGGTGAGTGGAAGACTCATTACGAGCATTTAG ATAAGTTTTCCACACTAATCAACTGAGAAGCTCAAAACCTTAACTACGCGTAGCTGTTGCATTGTAACACTACAAGCAGT ATGCAAGTCTGCAGGTGCAGAAAGACAGTGGAGTAGAAGAGAGAGTAGTAGTAGTACTTGATGATGACATACATATAAGA ATCTGTTATAAGCTATAGCTTAAGTATGTATTGAAGGTAAGAGAACTACACCTCTGGCTTCTAGGATATAAACACTAAAC AGGTTCTGGTTATGGTAAAGTTTAGGCACTAGACTACTAGAGTAGTTTAGGACTTTATGTTGTGCAGGGTATAGGGGATT GTTATTCAGCAAAGTAATTCATGTAGATAGGGTTCAAATCAATGAAACATATAGGTTTTAAATTTATGACAGTGAGATTG GTTGCGGCAGCAACATCACTGTTTTGAAGATCTCCATGGTCGCATCAGGCTCATTTGTCCATAGTTTTCAACTATGACTA CTTTAACAGTAATCGTTGCTGCAGTTTAAAACCTTAAGCACAAATCAATTTCATTTAGTGAAAACAAGTCTCATATGTAA GGCTACCATTATGGTATTGGTAAACTGTGAAGGCTTATGAGTAATCACACTAAAGGGTAATCGATAATCATGTGTGATGT GTGCACGTCTCTTATTATATTTTCTCATATATAAAGTATGAATGTTTGAATATA
CDS sequence (LotjaGi1g1v0751000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAGGAAGCTTCTCTATGCCTCTTGCTCCTCTCTGTTCTTATTATTAGCTGCTCTGGAACTCTGGTGGGGTTTTC ATATCATGAGACAAGAGATACTCCATCTACAACATCTGCTGGAAACACATTCTTCCAGAAAGACAAGATCTTCCAGTCTC AGATTTGGGTTTCTGTAAAGGATCTCAAGATTTTGAGCCCTCTGAGTCTGACCAACTCTGACAAGTTAGTTGATTTCTTC TTAAATAAAATCCTAGTTGAAAATGTTGTTTCTGGTGTTTCATGGGAAAAAGCTCATCTTGTGAGCATTCTTCCACTAGC AGACACCATTAGCATAATTGCTAGATGTGATGGTGGGAGTTTAGGTCAGAATGAGATACCTTTACTTTTTTCCACTCTGA AATCAGTTCATTCAGTTCTCACCAAGCTTCAATTAAGCAGTGAAGTAAAAATCTCGGTAGCGTTTCCGCTGTCATTCTTA GAGAATTTGAGTCCAATATATGAAAATGATCTCCTTAGGGTTCTTGGGTTTATAAAGAAAATAAATTCAATTATCATGAT AGAAGATAGCATTGATGGGGAATTAGGCATGGATGTTAGCTTTGTTCAATCTGTTATCAAGCGAGCCTCCCTTGCTGCTT CTATTCTTCCATGCAAAGATGTTCCAATAGTTCTGACAATCAAGAACTCAATGATTTCCAGTTCATTGGAATTAGCTCAA TTTAGTAAAACCGTATCCAAGTATCTTGAAGCAAACTCTCTTATTACAAAAAGAGTAGTTGCATTATATGTAGAAGCACA CACAAGTGTACAGAAAGGGATCAGAAGAGAAGAGGAAGAGATATTAGAGGTTAGCAAAGTCCATATCAGAAGAACTCTAA AAGAAGCAAGCAGCTTACCTACCCCAGTTTCCCCTATAAATCCAGCATCAGGTGCAGTTATCGCACCCCCAGAAACACCA GCCATCATCACAGTTCCTTCCACCAATCCTGTCACAGTGTCTCCCACCAATCCTACCACACCTGTTCCCTTAACCCCTAC AAATCCTGCCAATTCTCCAGTACCGGTCACCAATCCGGTCACAGCCCCGACTACATTTCCTGGTGCACAACCAGTTACCA ACCCTATGGCTTCTTACCCACCCCCATCAGGAAGTGTTCCTGGGGTAAACAACCCCCAGCCTCCTCCTCAAAACACAAAT GCTCAAGGGAGCTGGTGTGTGGCGAAGACTGGCATTCCGGAAACAACTCTACAATTAGCACTGGACTATGCTTGTGGAAA GGGGACTGCAGATTGTTCACAGATACAGCAAGGTGGGAGTTGTTACAATCCAAATTCATTACAAAACCATGCTTCTGTTG CCTTCAATAGCTACTACCAAAAGAATCCTGCTCCAACAAGCTGTGACTTTGGAGGAGTAGCCACCATAGTTACTACCAAC CCGAGTTCTGGTTCTTGCATTTATCCATCATCTTCAGGAGGCGCTGGCTCATCCGGCTCTATTAGTGCTACCCCACCTTC AGATTTTGGGTCCTCAAGCCCTCCTGATTTGAGTGCCTCACAGTCAGCTGGCGTGAGACCTTTTATTAGCTGCATGGTTC TGGTGATGTCATTGGTGAGTGGAAGACTCATTACGAGCATTTAG
Protein sequence (LotjaGi1g1v0751000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKEASLCLLLLSVLIISCSGTLVGFSYHETRDTPSTTSAGNTFFQKDKIFQSQIWVSVKDLKILSPLSLTNSDKLVDFF LNKILVENVVSGVSWEKAHLVSILPLADTISIIARCDGGSLGQNEIPLLFSTLKSVHSVLTKLQLSSEVKISVAFPLSFL ENLSPIYENDLLRVLGFIKKINSIIMIEDSIDGELGMDVSFVQSVIKRASLAASILPCKDVPIVLTIKNSMISSSLELAQ FSKTVSKYLEANSLITKRVVALYVEAHTSVQKGIRREEEEILEVSKVHIRRTLKEASSLPTPVSPINPASGAVIAPPETP AIITVPSTNPVTVSPTNPTTPVPLTPTNPANSPVPVTNPVTAPTTFPGAQPVTNPMASYPPPSGSVPGVNNPQPPPQNTN AQGSWCVAKTGIPETTLQLALDYACGKGTADCSQIQQGGSCYNPNSLQNHASVAFNSYYQKNPAPTSCDFGGVATIVTTN PSSGSCIYPSSSGGAGSSGSISATPPSDFGSSSPPDLSASQSAGVRPFISCMVLVMSLVSGRLITSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 19 | 19 | 5.0 | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 7 | 511 | 505 | 6.3E-66 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| PANTHER | 7 | 511 | 505 | 6.3E-66 | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| Phobius | 26 | 526 | 501 | - | – | |
| MobiDBLite | 366 | 401 | 36 | - | – | |
| MobiDBLite | 374 | 394 | 21 | - | – | |
| SMART | 404 | 488 | 85 | 5.6E-46 | ||
| Pfam | 405 | 475 | 71 | 1.7E-20 | ||
| MobiDBLite | 497 | 518 | 22 | - | – | |
| Phobius | 527 | 545 | 19 | - | – | |
| Phobius | 546 | 547 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0751000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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