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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0752100 |
| Transcript ID | LotjaGi1g1v0752100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT1G09540.1 myb domain protein 61; Swiss-Prot: sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86; TrEMBL-Plants: tr|A0A0L9TYC9|A0A0L9TYC9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0752100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132460950..132463190) extracted from Lotus japonicus Gifu genome v1.2.
TATAAATTCAAAATAACACTGTCCAATCCAATCACTCTCTCTTCTTCTTATTAATTTCCTTCTATTTATTTGATTCTCTA CCAAGTTGCCATGTTCTTTGTCAGAACCTCTTAAACCAAAACTCATATCAACGTAGGTAATTCTGACACACAAGTTTGGC GCTTTAAACAAACATTTTCAAGTCCAAGGTAGTGCACATGGGAAGACACTCTTGCTGTTACAAGCAGAAGCTTCGGAAAG GACTCTGGTCTCCAGATGAAGATGAAAAGCTTTTGAATTACATCACACAACATGGCCATGGTTGTTGGAGTTCAGTTCCA AAGCTAGCTGGTACTACTATATAGTATATTATATTAATTGCATATATCAGAACTTTATATTACATGTACAAGAATAGAGT CACATTTTATTTTAACTTACCTTTCTGAATCTGTGAAATGTTGTAAATGTCAGGTTTGCAGAGGTGTGGGAAGAGTTGCA GATTGAGGTGGATAAATTACCTTAGACCGGATTTGAAGAGGGGAGCATTCTCACAGCAGGAAGAGGATTCAATAATTGAA CTTCATGCAGTACTTGGCAACAGGTAACAATATATCATCTTTGCAAATCCTTCTGTAATTGATTATGTAAGTATAGTAGA AATCAATGGAGAAACTTATATGAGCAACTTCTAGGTGGTTAGATTTTCTTACGAAAAAAAAGCTGATCCAAACATGATAA TAGTTAAGTTGATCAGGAATTAGTAATGTTGGGAAATTTTTCTATAATTCGTAATTCTAAAGTCAATATCAATTTGCAAG AAATGACTCAGAAAAATTGGTGTTGTTGTTGGATTTTAGACATTCATTCAGATTGTGGTTCTATATAAACGTGATTTGTT GGTGCTTGATCAGGTGGTCTCAGATTGCAGCTCAGTTACCAGGAAGAACTGACAATGAGATAAAGAATTTATGGAATTCC AGTCTGAAGAAGAAACTGAGGCAAAGAGGCATTGACCCAAACACCCACCAACCACTCTGTGAGGTTGAGATCATCAAGGA CAAAGATTACAAGGAACCCACACCTGACAACAAAACCATTCATAAAGCCTCAGTGGGCTCCAATCATGAAATGATTAATA GTCTCATTGATCCACCAAAACAAAAGGCAACAACTTCTATCTCCATAGAGAGATACCACCCTCTTCAAATGTCTTCAACC TCCAACAACATCATCAACAATAACACCACCAGCACTCAGGAATTATTCCAAGACAAGTTTGGTACTACTTGTCATGATCA GGGATATTTCTCTTTCTATGGATCACCAAACATGGGAAACATTCCTTCATCATTTTGCTTCATCCCAGGTTCTTCCACTT CAGACCTCAATAATTCTAGTACTATAAACTTTTCCATGCTCAACTCTGTGTCAACCTCAATTTTGCCAAAACATGTCAAG TCAAATAACCCTTCCATATCCTCTGATAGCAGCAGCATAACCCAATTGCAGAACAGCACTAACTTCTATGATGCTCAATC TCATCATCATGTACCTTTACAAGCAGAATTGCAGCAAGAAGGAATTAAATGGTCTGAATATCTCAACACCCCTTTATTTC TGGGAAATGCAGCAGTCAAGAATCAGAGTACCACCACCACCACCACCACTCAATCTATCTACAGTAGTGATGAGGTTATT AAACCTGCAGAACCATCAGGGTTCATCACAGATGAATCTAGCACTACTTGGCATCAGCATCATTTTCAACCTTTGGACTT ATATACCAAAGATATGCAGAGATTCTCGGTTGCATTTGGACAAACACTTTAGCCTCATGCTGCACTCAACATGTGGAATG AAAAGTTTGAACCACATAGAAATATCCCAACATTTTCCAACGTGAATAGGTCAGAAATTTGTCGTGAGTTCTGACCCGAG GTGTGCACTTGATGTAATTTTTTTTTTTTTACTTTTTCTGAGTCCATCAATTATTCAAAAATTCAATACTCCCTGAGTGT GTTACAGTCAAAACCGTTGATAGGAAAATGTTTTCACATACTCTGGGTTTAGAAAAGGAGAGAACGGAAGCGAATTAATA TCAATGTAATATAATCTATTTATCTATCTATATATGTAAAGCACACTTGAATTTTAGCATTAAATACATAAGCAAAACTC AAGTGTTGCAATGTAATAAAAGCATCCAAGAAAAAATTGTAATAAATATATTAAACAATAATAAAATTAAAATTAAAAAA T
CDS sequence (LotjaGi1g1v0752100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGACACTCTTGCTGTTACAAGCAGAAGCTTCGGAAAGGACTCTGGTCTCCAGATGAAGATGAAAAGCTTTTGAA TTACATCACACAACATGGCCATGGTTGTTGGAGTTCAGTTCCAAAGCTAGCTGGTTTGCAGAGGTGTGGGAAGAGTTGCA GATTGAGGTGGATAAATTACCTTAGACCGGATTTGAAGAGGGGAGCATTCTCACAGCAGGAAGAGGATTCAATAATTGAA CTTCATGCAGTACTTGGCAACAGGTGGTCTCAGATTGCAGCTCAGTTACCAGGAAGAACTGACAATGAGATAAAGAATTT ATGGAATTCCAGTCTGAAGAAGAAACTGAGGCAAAGAGGCATTGACCCAAACACCCACCAACCACTCTGTGAGGTTGAGA TCATCAAGGACAAAGATTACAAGGAACCCACACCTGACAACAAAACCATTCATAAAGCCTCAGTGGGCTCCAATCATGAA ATGATTAATAGTCTCATTGATCCACCAAAACAAAAGGCAACAACTTCTATCTCCATAGAGAGATACCACCCTCTTCAAAT GTCTTCAACCTCCAACAACATCATCAACAATAACACCACCAGCACTCAGGAATTATTCCAAGACAAGTTTGGTACTACTT GTCATGATCAGGGATATTTCTCTTTCTATGGATCACCAAACATGGGAAACATTCCTTCATCATTTTGCTTCATCCCAGGT TCTTCCACTTCAGACCTCAATAATTCTAGTACTATAAACTTTTCCATGCTCAACTCTGTGTCAACCTCAATTTTGCCAAA ACATGTCAAGTCAAATAACCCTTCCATATCCTCTGATAGCAGCAGCATAACCCAATTGCAGAACAGCACTAACTTCTATG ATGCTCAATCTCATCATCATGTACCTTTACAAGCAGAATTGCAGCAAGAAGGAATTAAATGGTCTGAATATCTCAACACC CCTTTATTTCTGGGAAATGCAGCAGTCAAGAATCAGAGTACCACCACCACCACCACCACTCAATCTATCTACAGTAGTGA TGAGGTTATTAAACCTGCAGAACCATCAGGGTTCATCACAGATGAATCTAGCACTACTTGGCATCAGCATCATTTTCAAC CTTTGGACTTATATACCAAAGATATGCAGAGATTCTCGGTTGCATTTGGACAAACACTTTAG
Protein sequence (LotjaGi1g1v0752100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRHSCCYKQKLRKGLWSPDEDEKLLNYITQHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEEDSIIE LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSSLKKKLRQRGIDPNTHQPLCEVEIIKDKDYKEPTPDNKTIHKASVGSNHE MINSLIDPPKQKATTSISIERYHPLQMSSTSNNIINNNTTSTQELFQDKFGTTCHDQGYFSFYGSPNMGNIPSSFCFIPG SSTSDLNNSSTINFSMLNSVSTSILPKHVKSNNPSISSDSSSITQLQNSTNFYDAQSHHHVPLQAELQQEGIKWSEYLNT PLFLGNAAVKNQSTTTTTTTQSIYSSDEVIKPAEPSGFITDESSTTWHQHHFQPLDLYTKDMQRFSVAFGQTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 9 | 65 | 57 | 24.471 | ||
| Gene3D | 11 | 67 | 57 | 1.8E-18 | – | |
| PANTHER | 11 | 295 | 285 | 3.8E-97 | – | |
| PANTHER | 11 | 295 | 285 | 3.8E-97 | ||
| SUPERFAMILY | 12 | 108 | 97 | 1.57E-28 | ||
| SMART | 13 | 63 | 51 | 1.3E-12 | ||
| Pfam | 14 | 61 | 48 | 8.0E-15 | ||
| CDD | 17 | 61 | 45 | 8.69121E-12 | ||
| SMART | 66 | 114 | 49 | 1.2E-11 | ||
| ProSiteProfiles | 66 | 116 | 51 | 18.598 | ||
| Pfam | 67 | 110 | 44 | 2.5E-11 | ||
| Gene3D | 68 | 138 | 71 | 7.2E-19 | – | |
| CDD | 69 | 112 | 44 | 1.82636E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0752100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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