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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0753000 |
| Transcript ID | LotjaGi1g1v0753000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD repeat-containing protein; TAIR: AT5G24710.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q54S79|WDR3_DICDI WD repeat-containing protein 3 homolog; TrEMBL-Plants: tr|A0A0B2S7Y2|A0A0B2S7Y2_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0753000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132579317..132583583) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATACATATGTTCATTTACATATTGCATTCTTCTTTTTGCAATCTTTATGGATGTCGTATGAGTTTTTCTCATTTTC CAATTTTATCTGCTATTTTAGCATGGAGTTCCTTTATAGATCCGGCTCTAGCGATGGTCCTCTTGTTGCTTTTGGTGCAT CTGATGGAGTCATTAGAGTTCTCTCAATGATGACATGGAAGGTGGGTGCCTAAAATACTAATCTTGTTACAACTATTTCT ATCAGCATTCAGCATGTTATATGCTGCTTTTGTTCCCTGCAGCTCGTGCGAAGGTACACTGGAGGTCATAAAGGAACAAT CTCTTGCTTGATGTCCTTCATGGCTGCTTCTGGCGAGGTAAATCTTGATTCGGTGATTCCTAATGCTACTGGTATTGTTT TCAGGAACTTCTAATTCTCTTTCATCCCTTGTGGCCTCACCTATGTTTTAACAAAGAGTAATATTATTACTCACGCTTTT CCCATATTGTGTATAGGTAGCCATTGGATCAGACTTGTGTTAGTTGGTGTTGATGTAACAGCCCTGCACATATCTAATGG CTACCTATGCAGATCATGAGTATGTAATAGTAATATTACTTTTCAGAATTACCAGGTTATTTTGAATGCAAATAGTGACT AATTTTCATTGTTTGAACATGATTTTGAGTCTAAAACCATGGTTTGCGTAAAAGTAAAATAAAGTTACTTTCCCGTTGAA TCAAACCATGGTTTGCAAACTTTTGTCTAAAACATAGCTAGAGAATAATTACAATTGTTTGTTAAAATGTCAAACGTCTG TGCAGTTGATTATCTCTGTATAGTACTTTTATGTTTGGAAGTACTTGTGAAATTTCATTCCTTTTTTGGGGGGTGGGGGT TATGGTTGGCTTTCAGGCTCTTCTGGTTTCAGGGGCTAGTGATGGATTGCTCATACTTTGGAGTGCCGATCATGGTCAAG ATTCACGTGAACTTGTGCCCAAGCTTAGTTTAAAGGTACTGTTCTTTTCCTTTTGCAAGCTGCTCTTTGTCCCTTTGTTC AGTAATTAGTGAAAGATGAATGAATTATTGCTTGTTATGGATGTAAAACCGGTATTAGCCACCATTTGTCATTGCTTAAC AGTTGCTATTTTCCATCTGTTTAATTTTGTGCGTTGTATTTGGTCAAGTCCTATATGGATAAGAGATGAATAACATATTA TATTATAATAGGAAAGGAAGGGCTAAAGTTCAGGAACAAGAATGCCACATTAAATTTAGGCGAATTAGTTAAATTCTGAT GTTTTTCTTTTTAGTGGTGTGCAGCTTATTTTTCTTTTCCTTTCTTCTTTTCTACTTATTATTCTTTTCTATATGACATG TACTGATTCAATGCATGCATATTTCATTGGTTTATGATGCCACGTGATGCATCTAGGCTCATGATGGCGGGGTTGTGGCA GTAGAGCTGTCTAGGGTGATGGGAGGTACTCCTCAGCTAATTACAATTGGTGCAGATAAGACATTAGCCATATGGGACAC AGTCTCCTTTAAGGTGCGGTTAGTGGTGCTAATGTCTGGATATTTGTAATTCTATAAAAGTTCTCCTTCTGACTGGTGAC TATAAAAACTTAGCATGAACATACTTTTAATTCTCAGGAACTGCGGCGTATAAAGCCAGTTCCAAAATTGGCTTGTCACA GTGTGGCTTCTTGGTGCCATCCTCGAGCTCCAAACCTTGATATTCTAACCTGTGTCAAAGATTCTCACATTTGGTATGTT GTTTTCTTTCTCCTTTGGTGATTTCAAGTTTCTTATTTATTTACCTGATAGTATGATGAGTATATTTATCATACATTTTG AAGAAAAAAATATTTAAACTTTTGTTAGGGCGATCGAACATCCCACTTATTCTGCTCTCACAAGGCCATTGTGTGAATTG ACCACAGTTATTCCTCCACAAGCCCTTGCTCCCAGTAAGAAACTGAGGGTATGTGGTTAATTGCTTATAATTTAGCACCT TTTTTTCCGTTAATTATGACTTTTTAGTATGTTCTGTTCCTTGTGTATTTTTATTGAAGCTAGTCAATGTAGAAGAGTGA TATAAATATAATTCAAAGCATCTAAATACTTCAAGAATGATCATTCTAAATGGAGGCTAGGATAGATCAAGATTGAATGC AATAAAATCTGTAGAAAGCTTTACTTTCTCCTGTTAGAAGTTTTTGTTTGTTGTAGTAGATGCTTATCATGCTCTAGGAT AATAAGTCTTTTACAACAGAGAAGAAACTGAACTTCAACCCCGTATTACTCCATGCCCAATTTACCAATCTTTTTGTGGA CTGCCTGGTAATGGATTTGGTCAAACTTATTTTACCACTGTTTTTTGCTGCAGGTGTATTGTATGGTAGCACATACCTTG CAGCCACATCTTGTTGCTACTGGAACCAATATTGGTGTTATTATCTGCGAGTTTGATTCAAGATCTCTTCCACCTGTAGC ACCCCTACCAACCCCATCAGATAGTAGAGAGCATTCTGCCGTATTTGTAATTGAAAGGGAACTAAAGCTATTAAATTTTC AGTTAAACAACTCTGCAAATCCATCTCTTGGAAATAACAGCTCCTTGTCAGAAACTGGAAGACCTAAGGCAGATTTTTTT GAACCATTACCTGTCAAGCAGGGGAAGAAGCACATTAGCACACCTGTTCCACATGATTCACACTCTGTTCTTTCTGTGAG CAATTCAGGAAAGTAAGTTGCCTCTGCTTTTCGCTACGATTCTATTGACTTTTTTCTTCTTTGGAACAATTTTGTAATTA AATATAACAAATTTCTTCAATATAATTTAGTGGTCTTGAATTTTGTTAGATATCAAAAGGACATCTTATAATATCTCGAT CATATCTTAGAGTAATTAAGCTAAATTAGATTATTATTTAGATGGGTTTCTTTATTTTCTTATTTACATTGATTTGTTTC CTTTTTAAATTAACTACAATTAGGAGTCTACCCATTACTGTAAATAAGGGTAAGTATCTTGTCTTTTGGAAGATTACACC CTATAGTATTATATCTATATTCATTGTATTCCTGTGTTCTCTTTCTATATCTTAAAAGACTAAACCTTATAATTTCATCA TGGTACCAAAGTGGTATCTTCTTCTTGACCCGTGCCATCACTATCCCGCTGTTGAGTTCCCCAAAATTTGTAACTTTGTT ATAATACTGTTATTCTCTCATAATATAAAAACAATTTGGTTGATCTTTGTTATCTCAATCTTTCGGGGTACTCTGTTTTT ATTCGTATCCCTGTTTTTAGGGTTCTGGTTCTGCCTATCTGTTTTTAGTTGCAACAATCCCAACTAGATCAAGTACATAT AAGGTTGTCTCTTGTCTGCCCATGATTTAGCAGAAGTCTGAAATGTTTACTGTTGACCAATTCAGCCCAGATAATGCGTC AAGACCCTCATTAGTTTTCCTTTTTCAAAATGATATATTTGTAACAAGCTTAAAGCTAAGTAAGCTTGAGTCGAGTGTTA GAATATGAAAAATATATCTTATCATATCTTGATCATATTGTAGAGTAATTAAGGTAATTTAGATTATTCTTTAGATTGGC TTCTTTTTTTCATATTTAATTAGTATTAGGAGTCTTAATTAGTTTTCTTATTTAACTGGAACCAGGAGTCCGTCTACCCA TTACTATGAATAAGAGTAAGTATTTGTCTTTTGTAAGGTTACACCCACTAAATATGTAACTTGTTTGTATTCCACACGTA AAAAGTCAACACTCACAATAGTTATTACCCTTACCATGTTTGTGTATGTTGTACTGTTTCTATGTTTATCTTCTTTAGCA TTTAGTTTTTCAAATTGGAGTGCTTTTTGGGTTGCTTTCTTACTTGCCATTTGTTTGCAGGTATTTATCGGTCGTTTGGC CAGATATACCTTACTTCTCTGTCTACAAGGCCAGTGATTGGTCGATTGTTGACTCCGGCAGTGCAAGACTTCTTGCTTGG GATACATGTCGTGATAGATTTGCTATATTGGAATCAGCAATAACTCCTAGAATTCCTATAATTCCCAAGGGTAGTTCATC AAAGAGAGCAAAAGAAGCTGCTGCAGCACAAGCAGCAGCCGCTGCTGCTGCTGCTGGTACAGCTTCTGTTCAAGTCCGCA TCTTGTTAGATGATGGAACGTCAAATATACTAATGAGGTCTGTTGGTGCACGCAGTGAACCAGTAAGATTCTTTGTCTGT CTTATAAAATTCTCTCGTTGCTGGTGA
CDS sequence (LotjaGi1g1v0753000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATACATATGTTCATTTACATATTGCATTCTTCTTTTTGCAATCTTTATGGATGTCGTATGAGTTTTTCTCATTTTC CAATTTTATCTGCTATTTTAGCATGGAGTTCCTTTATAGATCCGGCTCTAGCGATGGTCCTCTTGTTGCTTTTGGTGCAT CTGATGGAGTCATTAGAGTTCTCTCAATGATGACATGGAAGCTCGTGCGAAGGTACACTGGAGGTCATAAAGGAACAATC TCTTGCTTGATGTCCTTCATGGCTGCTTCTGGCGAGGCTCTTCTGGTTTCAGGGGCTAGTGATGGATTGCTCATACTTTG GAGTGCCGATCATGGTCAAGATTCACGTGAACTTGTGCCCAAGCTTAGTTTAAAGGCTCATGATGGCGGGGTTGTGGCAG TAGAGCTGTCTAGGGTGATGGGAGGTACTCCTCAGCTAATTACAATTGGTGCAGATAAGACATTAGCCATATGGGACACA GTCTCCTTTAAGGTGTATTGTATGGTAGCACATACCTTGCAGCCACATCTTGTTGCTACTGGAACCAATATTGGTGTTAT TATCTGCGAGTTTGATTCAAGATCTCTTCCACCTGTAGCACCCCTACCAACCCCATCAGATAGTAGAGAGCATTCTGCCG TATTTGTAATTGAAAGGGAACTAAAGCTATTAAATTTTCAGTTAAACAACTCTGCAAATCCATCTCTTGGAAATAACAGC TCCTTGTCAGAAACTGGAAGACCTAAGGCAGATTTTTTTGAACCATTACCTGTCAAGCAGGGGAAGAAGCACATTAGCAC ACCTGTTCCACATGATTCACACTCTGTTCTTTCTGTGAGCAATTCAGGAAAGTATTTATCGGTCGTTTGGCCAGATATAC CTTACTTCTCTGTCTACAAGGCCAGTGATTGGTCGATTGTTGACTCCGGCAGTGCAAGACTTCTTGCTTGGGATACATGT CGTGATAGATTTGCTATATTGGAATCAGCAATAACTCCTAGAATTCCTATAATTCCCAAGGGTAGTTCATCAAAGAGAGC AAAAGAAGCTGCTGCAGCACAAGCAGCAGCCGCTGCTGCTGCTGCTGTGAACCAGTAA
Protein sequence (LotjaGi1g1v0753000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNTYVHLHIAFFFLQSLWMSYEFFSFSNFICYFSMEFLYRSGSSDGPLVAFGASDGVIRVLSMMTWKLVRRYTGGHKGTI SCLMSFMAASGEALLVSGASDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGTPQLITIGADKTLAIWDT VSFKVYCMVAHTLQPHLVATGTNIGVIICEFDSRSLPPVAPLPTPSDSREHSAVFVIERELKLLNFQLNNSANPSLGNNS SLSETGRPKADFFEPLPVKQGKKHISTPVPHDSHSVLSVSNSGKYLSVVWPDIPYFSVYKASDWSIVDSGSARLLAWDTC RDRFAILESAITPRIPIIPKGSSSKRAKEAAAAQAAAAAAAAVNQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 12 | 35 | 24 | - | – | |
| Gene3D | 20 | 292 | 273 | 1.3E-21 | ||
| PANTHER | 34 | 164 | 131 | 2.6E-173 | – | |
| Phobius | 36 | 46 | 11 | - | – | |
| SUPERFAMILY | 43 | 309 | 267 | 4.12E-21 | ||
| ProSiteProfiles | 43 | 168 | 126 | 11.787 | ||
| Phobius | 47 | 69 | 23 | - | – | |
| SMART | 65 | 108 | 44 | 0.23 | ||
| Phobius | 70 | 80 | 11 | - | – | |
| Phobius | 81 | 107 | 27 | - | – | |
| Phobius | 108 | 365 | 258 | - | – | |
| SMART | 117 | 159 | 43 | 0.29 | ||
| ProSitePatterns | 146 | 160 | 15 | - | ||
| PANTHER | 164 | 362 | 199 | 2.6E-173 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0753000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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