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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0754300 |
| Transcript ID | LotjaGi1g1v0754300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chitinase; TAIR: AT4G01700.1 Chitinase family protein; Swiss-Prot: sp|Q5NB11|CHI10_ORYSJ Chitinase 10; TrEMBL-Plants: tr|C6TNB0|C6TNB0_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0754300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132735377..132737395) extracted from Lotus japonicus Gifu genome v1.2.
CCAAATTAGTAGCTTTGCCATGCAAGTCTTCTTCTGATCATTCCCTCTTCACATCTGTTTTTCTTTTTCCTAACCAGAAA TATAGGAATGCAATTTTATGATTCGCGAATATCTACATTCTTATGGGACCAACTCTCCCCATAAAATATCACATACAAAA CTCAAATGTGATACCCTAGTTAAAAAGAATTAAACATGTTGCACTTGAACTGTACTCTTCATCTTTCTAGATTTGTCGTC TTGGTCTTCATCTGTCTATAAAAGCCTTTGTGCTTGCTCTTATTCCCTTAACAAAGACTAGTTCTTAGTGACACTTAACC CAATTTCATCAATGACATTATTCTCCTTCTCCTTTATTGGTCCCTTTCTCTCCACCTTAATTTTTTGCTTCATTGCTCTT TCCTACTCTGCATCTCTGGGAGCTGAAGAATGGGGCTCACCACCTATTAGACCCATCTCTTCTCTAATTAGAAAAAAGCT TTTTCACTCCATTTTCCTCCACAAAGATGACAGTGCATGCCCTGCAAAGAACTTCTACTCCTACAAGTCCTTCATCCATG CATCCAAACACTTCCCTAAATTCGGCACCACAGGTTCTTTAGCCACGCGCAAGCGTGAAATCGCTGCATTCCTAGCTCAG ATTTCCCATGAAACCACAGGTGGCTGGGCCACTGCACCTGATGGCCCATATGCTTGGGGCTTGTGCTTCAAGGAAGAAAT CAATCCTCAGAGCAACTACTGTGATGCTAGTAACAAAGAATGGCCTTGCTACCCTGGCAAAAGTTACAAAGGAAGAGGAC CAATTCAACTTTCTTGGTACAGTGCTTGCAGATTGTTATTAGAATATTGATCTATTACTTTGAAAGAGCTTATTAGAACT AATATTATAGCATAAACACTTATAAATGTGTTTTGATAAACTTTAAAAAATAACTTATAGCCTTTCTTTTAGCTGTTTTG AACTTATTTTCATAAATTTCTTATAGTAACTTAATGAATAAGTGATTATAATCAGCTAGTTTGAACTTATTTCAATAAAC TTCTCAAATTAGGGTGCCATAGCGCTTATTCACAAGCTAATTTGAGAAACTTGTTGAAATAAGATGAAAAGAGGTTATAG ATAAGCATAAATTCTTATTAATTAGCTAATCTAAACAACTTATCAATATACCATAAGTTAGTTACATAAGTTTTTCCAAA CACTTACATACGCGCTTATGTTATAGTTTATAATATGTGATACGTGCTTATTGATATGCGGTTGTTTACCATCTGCACAT TATTTCTAGTTAAGGAGCATCTGGGTTCTTGGTTAAATGGAATCAATTTTTTTGCAGGAATTTCAACTATGGGCCAGCAG GGAAGGCTTTAGGATTTGATGGGCTGAGGAACCCTGAGATTGTGTCTAACAATTCTGTGATTGCCTTCAAAACTGCTCTG TGGTTTTGGATGACAGAGAGAAAGCCAATACCTTCTTGCCACAATGTGATGGTTGGAAAATATGTGCCAACAGAAGGTGA CATAGCAGCTAACAGAACAGAAGGTTATGGCTTGGTGACTAACATAATCAATGGTGGACTTGAATGTGGAATTCCCGGTG ATGCAAGAGTGGATGATAGGATTGGATTTTTCAAAAGATATGCCAAGTTATTCAATGTGGACACTGGACCTAACTTGGAT TGTGCATATCAAAAATCCTTTTAATTTTTTCCTTGGTTTTAGTTGTGTATTTTTCTCTTTCTTTCTTTTGTGGGTTCTTT TCTCTAGCCAAACTTCAAATCAATAGCATGCACCTGCTTCGTGGTATTTTCTGTCTGTAGTTTATCCTTAGAAACTGATG AATGAAAAGTTTTATATTAGAGAGCGATGTCATTCTATTGTCGATTTCAAATATCATATATGATAAATTGATTTACATTT GTCACATGTATTTGGAATTTTGGATCTATCCTAACGTCGTGGGTGGTTCACTCCCTATTGCTGTAAGTTTGTTTTATTGC ACTCAATAATCATTTAAAT
CDS sequence (LotjaGi1g1v0754300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACATTATTCTCCTTCTCCTTTATTGGTCCCTTTCTCTCCACCTTAATTTTTTGCTTCATTGCTCTTTCCTACTCTGC ATCTCTGGGAGCTGAAGAATGGGGCTCACCACCTATTAGACCCATCTCTTCTCTAATTAGAAAAAAGCTTTTTCACTCCA TTTTCCTCCACAAAGATGACAGTGCATGCCCTGCAAAGAACTTCTACTCCTACAAGTCCTTCATCCATGCATCCAAACAC TTCCCTAAATTCGGCACCACAGGTTCTTTAGCCACGCGCAAGCGTGAAATCGCTGCATTCCTAGCTCAGATTTCCCATGA AACCACAGGTGGCTGGGCCACTGCACCTGATGGCCCATATGCTTGGGGCTTGTGCTTCAAGGAAGAAATCAATCCTCAGA GCAACTACTGTGATGCTAGTAACAAAGAATGGCCTTGCTACCCTGGCAAAAGTTACAAAGGAAGAGGACCAATTCAACTT TCTTGGAATTTCAACTATGGGCCAGCAGGGAAGGCTTTAGGATTTGATGGGCTGAGGAACCCTGAGATTGTGTCTAACAA TTCTGTGATTGCCTTCAAAACTGCTCTGTGGTTTTGGATGACAGAGAGAAAGCCAATACCTTCTTGCCACAATGTGATGG TTGGAAAATATGTGCCAACAGAAGGTGACATAGCAGCTAACAGAACAGAAGGTTATGGCTTGGTGACTAACATAATCAAT GGTGGACTTGAATGTGGAATTCCCGGTGATGCAAGAGTGGATGATAGGATTGGATTTTTCAAAAGATATGCCAAGTTATT CAATGTGGACACTGGACCTAACTTGGATTGTGCATATCAAAAATCCTTTTAA
Protein sequence (LotjaGi1g1v0754300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLFSFSFIGPFLSTLIFCFIALSYSASLGAEEWGSPPIRPISSLIRKKLFHSIFLHKDDSACPAKNFYSYKSFIHASKH FPKFGTTGSLATRKREIAAFLAQISHETTGGWATAPDGPYAWGLCFKEEINPQSNYCDASNKEWPCYPGKSYKGRGPIQL SWNFNYGPAGKALGFDGLRNPEIVSNNSVIAFKTALWFWMTERKPIPSCHNVMVGKYVPTEGDIAANRTEGYGLVTNIIN GGLECGIPGDARVDDRIGFFKRYAKLFNVDTGPNLDCAYQKSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 31 | 31 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 12 | 23 | 12 | - | – | |
| PIRSF | 16 | 283 | 268 | 6.1E-107 | ||
| PANTHER | 16 | 283 | 268 | 8.4E-157 | – | |
| PANTHER | 16 | 283 | 268 | 8.4E-157 | – | |
| Phobius | 24 | 31 | 8 | - | – | |
| Phobius | 32 | 283 | 252 | - | – | |
| SUPERFAMILY | 42 | 283 | 242 | 1.63E-96 | ||
| CDD | 46 | 277 | 232 | 1.26393E-116 | – | |
| Pfam | 46 | 277 | 232 | 2.8E-104 | ||
| Gene3D | 51 | 283 | 233 | 2.7E-101 | – | |
| ProSitePatterns | 63 | 85 | 23 | - | ||
| Gene3D | 128 | 186 | 59 | 2.7E-101 | – | |
| ProSitePatterns | 190 | 200 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chitinase activity | Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Chitin catabolic process | The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. | ||
| Biological process | Cell wall macromolecule catabolic process | The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall. |
Expression pattern of LotjaGi1g1v0754300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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