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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0754900 |
| Transcript ID | LotjaGi1g1v0754900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptide chain release factor 1; TAIR: AT2G47020.1 Peptide chain release factor 1; Swiss-Prot: sp|A5V9C3|RF1_SPHWW Peptide chain release factor 1; TrEMBL-Plants: tr|K7KGG4|K7KGG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132798133..132805851) extracted from Lotus japonicus Gifu genome v1.2.
CTTTATATGGTGAATGGGCCTATGACAGAAATCATCATCATGTTCACTTCGCGAAAACGCGAGAACACTGAAAACGCAGA GGAAAAGCTTCAACGATGAGATGAGAAATCATGGTAGGTTCATCATGTGCCGCTACCTTTCACGGTGGCGGAAGCAATTC GAATCAAACTCCGATCTCCCACTCCCTAATTTCCGCCACCGTCCTCCGTTTCCCCGTCGTTCTTACTCCGCCGGTAAACC TTCTTCCTTCTTTAGATCCGGCGATTTTCATTGCTATATTTTTTTTTTCTCTGTTTGTTCTGAATTTAATTGATATTGTT AGCAGAAGTGCAACCTCAACTGTCTCCTGACCTGTTGAACATTATGGAACAAAGACTCTCTGCAATTGAGCACAGGAGTG CTTGTCTTAGCAATCTTCTGAATCAGGTAATGCAATTGGAATTTCTGTTTTTGATGTTGTAAGTTGAATGTTAGTTTGAG TTCATTGTCTTATGTTTGATTGAAGACAGCCAGAAGCTACACCTTCAGAGTATGCACGAGCTAATAAGGAGCTGAGGAAG CTGAGTGGCTCTGTTGAACTTATCAATGAATTAAGGGCAAAACAGAAGGTAGTTAATTGATGCAGACGCTGTTTTTTCTT AGCAATTTGCCTGAATTTGAACTAGTGTTAGTATTTTGGAATCATAACATTTTGTGATTTTTTGTTTGCAAATGGGTTGG TGACTGTGATACATTCATCTTTCTTAGGAAATGAGCTAGTTTCTCATTCTTGAAGAATCATTAAGTTGTATTGTTAAGCT GTGTTAAGGTTGAAACTTGAAAGTATTTTTCTGGCTTAATTCTAGGTTGGTGTTTTATGCTTCACATGAAAGATAGGGTT CATATTGCTGTCTCTAAATCTTCTTCTTTTTTTTGTCTTTTCATTCTTCTAGTTAACTCTTTTGTTTAGCATACCTAGTT AGCAAACAGATACTTGAGGGCTTATATATACTTTTTGTTTCGGTAGTACTTCCATGACTTGGTTCATGACAAAACACAAT GGTGTCATTGTAGTTTATAGGACTAGGAGTCACCACCTAGTGGGGGAAAAAGCTTTTTTGTTCCTTCTATTACATGTTTT TTTTTAACATATAGCCACATACTACTCTCTTTGTTTCTATTTATAACTATTTACTAGTCACTTTTAACTAATTTACATAG ATTTAGAAAATTAGTTTAGATTAATTGTTAGTCTCAAAATTATAAAAAAATTATGTTAGTTTTCCTAAATTACCCTTATT GGAAAACAAAAAGAAATTTGGGAAAAAATATTTAATGATTCATAGGTATTTAAAAGTGACTTATATTAAGGGTCATGTAA CCAAGTGGGTTGGTGTAGTGGTTCAGCACTTCATCCTTTAAGCAAGTGGTTGGGGGTTCGAATCCCAACTCTTGCGAATA GAAAAAACTCCTTGGCCAGCCCCCTACCGCTTAGTGCGCTGACCGTGGGGCGAGGGATTAGTCTCACGGCTATTGGCTGT GCGCTGACCGTGGGGCGAGGGATTAGTCTCACGGCTATCGGCTGTGGGGATACCTTGGTCAAGACAAAAAAAAATATATT AAGGGTCATGAAAATCTTATAGAATATGCCTTATAAATAGGAACAAATGGAGTATCTATCTATTTACATTTCCTGTGTGC AGGAAATTAGGCTTTTTGGAGTTTGAAGAAATAAGAAAAAAAAAGGGGAAGATTATTTTCTGATGCTACCTCTTTTTATT ATCGGCAGGAAATTGATGGCTTGAAGACACTAATGGCTGAAAGTTCTGAAGACAAAGACATGCTTAGTATGGCAACAGAG GAGTTTGGCCAAGCCAAAGAGGAAGAAAGAAGATTACAAAATATGCTGCTGAAGTCATTACTTCCTAAAGATGATGCTGA TGAAAGGGATTCCATTTTGGAGGTGCGAGCAGGTCAGTGTCACTTTTGAAAATGAATGCTAATCACTGATGTTCATCAAA TGCATGCTTCTATGAATGTCTGTTATTTACTCTTATCCCTGTTTGCTTTTGCCTCTCTATGCTTTTTATTACGCACCTTT TAATTTTTTGGTGTTATACTGTTTTATTCCAGGCTCTGGTGGGGAGGAGGCTTCCTTGTTTGCAATGGATATCTTCAAAA TGTAAGGCTATCTATCACTGGAGGTCAGATTCGGAAACTATTGTTATAGTTTTCTAAAAGGGATATTGTCTCACATAATG TAGGTATGAGAAGTATGCTCACAAGAATGGATGGAAGTTTGAAGTTGTAGATATAGCTCAATCTGATATGAAAGGATACA AGGTACATATTTCATGCATTATATATGCGAAATACAATTTGATTTTGAGTACCATTTTAGTTAAATGCTTTGAATTGTTG ATTGTGACATCCACCATGTGTTACAACCTTCTGGTTATACTCTGTGCCACATGTTCTTGATAGAAGAAATGAATTTATCT TACAATTGACGCATTCTTTGTTTGGACTTTGCTTTATCAGGAAGCTAGTGCAGCAATTGCAGGAGCTGGTGTTTTTGGGA AACTAAAATTTGAAAGTGGAATTCATAGAGTACAGGTAGCTGCTATACCTCTCAGATACTATCTATGGCTAAGTCCACTT TTAGCAATTACTGACATTCTTTTTCAATAGCGAGTTCCTGTGACAGAAAAGTTGGGACGTGTTCATACCAGTGCTGTTTC TGTAGCAATCCTCCCTCAGGCTGATGAGGTAATTAGTAATATAAATCAATTCCCTGTAATATGAAACTTGAATGTCTGTT GTGAGAATATGAAACAGTGCTCTCAACTTTTAGCTCCTCTTAGAGGATAAAGAAAAGGATTCCCATACAACCTCCCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCACACACACACACACACTCATCCTCCTCTGGTTCTGTTGGGTTAA CGAATGAAATTATGAAGGTCTGGTAAATGTCTTATATGTTTGATATTTTATGTGCTCGTACCTTTTTTTTCTTTCTGGAG TCTTATTGCTAATCATGCACGCACCCTTATGTAGGTCGATGTTCAATTGAAAAATGAAGACTTAAAAGTCGATACCTATA GATCTGGTGGTTCAGGTGGTCAGCATGCAAATACAACCAACAGTGCTGTTAGAATAACTCACATTCCAACAGGGATTATA GTTGCTATACAAGATGAGCGTTCTCAGCATATGGTAAATGGTTTAAAAATATTTGGCATGGTTCACATTACTTTTTTGAC TGCTAGTGTGCTTTCTTTTTAGTATTACTCTCATTCTGATTTTATAGAAATTTATACAGTGTTTTGGAGTTAATAGTATT ATGTAGTGTTGCTGCTCCTCTTGATTGACTTGTAACTTATCTATTATGCCTTGCATAAAATTTACCTGGACTTAAGAGAG GTATTGTTGAGGGGATATGTTCTGGTGTGGTGGTACTTGGTAATTTTTTGCATTAGTTGTTTTTCATATGGCATGGTTGA AGTGAATTGTGTGCATTCTCTCAGTTCAGTTGATGCAAGCAGGCTGATTAAACTTTGTTTAGGCTTCATCTCTTTGGCAT TTACATTCTCTTAGAAAGCATGTTTATGGTATAATTTCATATTAGTCTCAAAACTTTTAAGTAGAAGAAAGCATGACGCA AGCTCTTTTTCTTTTCCCCTACTCTTTTTTTTTTTAAGCTTAATTCGTTTCAGTAGTCTAAGATATTGAAAGGGCCATTG TGACATTGGATGAGGCAGGCTTGGCTGAGTGTGATCTGTGATAAATTATTTTGGTTACTCTTTCTACATCTTTTTTCTCA ACCTGACTTTCTATCTCTTGCCATATCATTTATGTTTAGAACAAGGCCAAAGCTCTCAAGATACTGTGTGCGAAGCTATA TGAAATGGAAAGGTTGAGACTTCACAGTAATCGATCAAAGCTTCGATCGGAGCAGGTACGAGAGATATCTAAAAGACTTT GTCCAACTGCTATATACTTTTCTTTTCTGAATTGATAAGTAGTTTCCCAACCTGCACAGATTGGTAGTGGGGACAGATCT GAACGCATCCGAACATACAATTTTCCTCAAGGCCGTGTAACTGATCATAGAGTTGGTATCACCTATCACTCAATAGACGA TGTAATGCAAGGAGAGAATCTTGATGTCTTCATTGATGCTCTTCTATTGCGAGAAGAAATGGACGCAGTTGCAAGTTTTA CTTCTTCTCAGTAAAGGCAATGGATTCAATTTTTGCTGATCATTAATCTAGTGTCTTGTTTTTGTAATTAACTAGCCGAA AAGAAAAAATTCCATATTTTGCTTAGGGTGGTAGACAGTAAGCATAGCACCAAATGATGTTGCCTTATCATTCATGATTG TGACTTGTGAGGATTTGTTTTCTCTCAAATAATAGACTTTATCTGTACTCAGATAAATAAACATGGAGTTGTTGTTTTGT CTCGGTTGTTTTCTCTTTATCACCCTGTGGTCCTTACCGTGAGGGTAGCTAATTGGCTACAATCATTGAGTATAATTGTA AAATTTGTATAAAATCATTAGCAGATTAGGATGACTTGTGACTTGGCTGCCGGTTTTGAATTATTATTTTTTAAAAAATC AGACAGGGAAAAGAACAAATCACATTGCAAGCAATGTGCCAAACTCATCTAATTTTTTTAATTAAAAAATAGCCTATTAA GGATCAACTTGGAAGTTCAATATGAGGATCAAACTAAACACTCATTTGGGTGTCCTTCTTGAGTCATTTTTCATACGATT TGTTTTCTTTTTTCTTCAAACATGGATAATGGATTTGTTTCTAAGTTAAATAATTATATATTTTAAGATTTTTATATGCT ACCAATTTAAATGAAAATGTAAAATCTAAAACTATAAAACTGAGTAGATCGATTGAATGTAAATTCAGAATCTAACCGAT TAAATAAAAGAATTAAAAATAATAAGAATTCAATCAGATAATTTTTATCATTGAATCAAATATTTTTTCTTTTTAGAACC GGCTAATCCATTGTTGTGAACACAAAAAGCTCTAGGATTGATGGGTTCTCTTTCTAGTTTCTACTAACAATCTCCGCAAA TCTACATATATCTATACAAAATCTATATCCCAATGATTCAAATAACTGAGACCTCTAAGGTAGAACACTTGTCATGTACA GTTGTAGAATTTTTTGCATGAAGGATAATCTTCCCCAGTTTGCATTCCTCATCCTAAGTGTGTTTGGATTCCTCCCGGAA CCCAGGTTCACTTGCCTCAGAAAGAGAGATCGCACATCCCAAAATGCCGAACATGAAAGAGAGACCCGATTGCGCTGTGA TCAACATGAAATCAAACAGGTCCTAAGAGATGAGGTAATGTTATCTTCCCACGGTTAGAGGGGTCATGCTTCCCGAATTG ATCACAAATTTGCATCACATCTTTTTCCTGTATTTTACCCATCTCTTTGAGCTTGAATATTACATACTCTGACTTACTGA ATAGTACAAAGCAACAAAAAAAAAAACAAAGCAAAGTTGGATTGAAATTTCTAGTTAGATACGAATCCAAAAAGAAAAAT AGACTATACCTTTAAAAGTAAGGACCATATATATAATTGAATAATGCAGACATAACTTATGCTCACTCTCTGCTCCTACC TGTGTACTTTGCACTTTGCAGATTGCATTGAAAGTTATTTAAAACATTTAAGAAACAAACATTACTCCTCACATGTTCGA TCAGAGATCGATGACAGCTCACCAAGATAAACAAAAGGGAAAAAGAATCCCATCCAAGACAATGCTGAATTTAACAAATT ATAATAATGTCTGCTTATGACTAACATTAGTTTAGTATGGAGATGCTCTACTTAAGTCACAGATGACTACAGATTATAAC TAGTTGTAATTATCTCAAAGCACCATTGATTATATCCTCCTTAATCAATTTTAAGGTGTTTGGATGTTTACTTCAATGAT TGATTCTAGTTTCAAAATCAATTCTTTGATCAATCTACAATCCTAATTTCTGGTGTGTGGACATAATCAACTAATTATAG GATTTCACAATTGAATATTATTACATTACTCACATAATTCTTTGTTTTAGAAATATCTCCAAATGTAAATCAACAATATC AAAACCATTTCTATCCACAATCAATTCAGAAAAACTTAACCAAACACTCACTTAAGGTGGATGGTGCTCAATTAGAACAT CCCCAATTGGCAATCTCTTACTAATTTGTGGTTCTCAGAACTCTCAGGGTGCTTCACTCAATAGTCAACACACTATTTAG TGCTGAGTGCTCACTTATCAGTAAACATAGGCAGTGTAAACTAACATGGTTATCACAACCTATAGATTGCTAACTAGATA AGAAAAATGTATTGAACCTAAAATGAACAAGTGTTAGTTAGTCACATTCACATACCTGATAAAACCAGTGTGGTTGATAT CAGCAGCAATCAAATCCTCAACAGTGATATCTCTCTGCAGCACATTCTTCGCCATTCTCCGGTGCCTCTTATCGATTCTA GCCTCAGCCAAATAGAGGAAAGCCCTTGCCACCATCAATGTAGAAAACAGGAGCCAAACCGCGGCGAACAACCGCCCCGG AAGCGTCTTGAAGGCTCTATCCCCATACCCAACCGTAGTAACAGACATGACAGACAAATAAATAGAATCAACCCAATCCA AACCCTCCACAAAATACAGCACCAAACACCCAATCCCAATACACAAAACCACCACACCAAGTGCCAAACCAACCTTCAAC CTGATCCTCATCCTCCCTTTGGCCACATCAACAATGTAATCCCTCGCAGAGAAACCCGCCCTCCCACCCATCTGAAGCCC AGTGAGGATGACATGTTCCTGCAAATCAAGGACAAAATTGACAAGCCCACTAAGGAGTATGTCTATGAATCCAAACCCTA CCAACACAAAAACGCAGGCAAAGACCTTTGTGACTGGGGTCAATGGAGCTATATCCCCATAACCTATAGTGCACATGGTG ACTATGCAAAAGTAAAGGGCATCAACAACAGGGTGAGTTTCAATCCCAGAAAAACGGTCTCTGTTGAAGGAGTATATGGC AACTCCAACAGAGAGGTAAAGAATGAGCAACCAGATTCCTTGTCTGATTATGGAACTGGTTTGGGGTTTGGGAAGTTCAG GTGGTTTGGGTTTGAGGTCTCGCATGACGAATAGAGCAGGTGCGGTTTTGCAGCGGCTGAGCTTCTTCTTCAACTTCGGA GGAGGAAATGGTTCAGAAGTGGAGGATTGAATCTCTGGTTTGCGAGGTCGTGGGGGCGGTGGTTGGTGCAAGGTGGTGAC ATCGTTGAAGGATTTGGAAGAAGGGAAGAAGGGTGAATCGCAGTGGTGGATTAAGGGAAAAGCTTCATCATCCTCCATGG AAAGAGAAGAAGAAAATGGGGAGAAAAGAAAATGGAGAGAAAAGAAAAGAAAAAAACACGTGAGAGAGAAAATTAGAGAG TGAGATTGGTGTGGTCGTGTGGACGTAAAAGCGTTTTAGGAATCAGACTGAGTTTGTTTCTGCAAGGTTCTTTGTTTCAT TGAATGCTGAGGAAACAAACAGAAGAATCAGTTGGAGTGGGGCCCACTGCCATGTCTGCTGAAAGCGATTTTTGTTGTTA GTTTTTGGGCAAAATAACACCACTTGACTTGAGTTGATA
CDS sequence (LotjaGi1g1v0754900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAATCATGGTAGGTTCATCATGTGCCGCTACCTTTCACGGTGGCGGAAGCAATTCGAATCAAACTCCGATCTCCC ACTCCCTAATTTCCGCCACCGTCCTCCGTTTCCCCGTCGTTCTTACTCCGCCGAAGTGCAACCTCAACTGTCTCCTGACC TGTTGAACATTATGGAACAAAGACTCTCTGCAATTGAGCACAGGAGTGCTTGTCTTAGCAATCTTCTGAATCAGCCAGAA GCTACACCTTCAGAGTATGCACGAGCTAATAAGGAGCTGAGGAAGCTGAGTGGCTCTGTTGAACTTATCAATGAATTAAG GGCAAAACAGAAGGAAATTGATGGCTTGAAGACACTAATGGCTGAAAGTTCTGAAGACAAAGACATGCTTAGTATGGCAA CAGAGGAGTTTGGCCAAGCCAAAGAGGAAGAAAGAAGATTACAAAATATGCTGCTGAAGTCATTACTTCCTAAAGATGAT GCTGATGAAAGGGATTCCATTTTGGAGGTGCGAGCAGGCTCTGGTGGGGAGGAGGCTTCCTTGTTTGCAATGGATATCTT CAAAATGTATGAGAAGTATGCTCACAAGAATGGATGGAAGTTTGAAGTTGTAGATATAGCTCAATCTGATATGAAAGGAT ACAAGGAAGCTAGTGCAGCAATTGCAGGAGCTGGTGTTTTTGGGAAACTAAAATTTGAAAGTGGAATTCATAGAGTACAG CGAGTTCCTGTGACAGAAAAGTTGGGACGTGTTCATACCAGTGCTGTTTCTGTAGCAATCCTCCCTCAGGCTGATGAGGT CGATGTTCAATTGAAAAATGAAGACTTAAAAGTCGATACCTATAGATCTGGTGGTTCAGGTGGTCAGCATGCAAATACAA CCAACAGTGCTGTTAGAATAACTCACATTCCAACAGGGATTATAGTTGCTATACAAGATGAGCGTTCTCAGCATATGAAC AAGGCCAAAGCTCTCAAGATACTGTGTGCGAAGCTATATGAAATGGAAAGGTTGAGACTTCACAGTAATCGATCAAAGCT TCGATCGGAGCAGATTGGTAGTGGGGACAGATCTGAACGCATCCGAACATACAATTTTCCTCAAGGCCGTGTAACTGATC ATAGAGTTGGTATCACCTATCACTCAATAGACGATGTAATGCAAGGAGAGAATCTTGATGTCTTCATTGATGCTCTTCTA TTGCGAGAAGAAATGGACGCAGTTGCAAGTTTTACTTCTTCTCAGTAA
Protein sequence (LotjaGi1g1v0754900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRNHGRFIMCRYLSRWRKQFESNSDLPLPNFRHRPPFPRRSYSAEVQPQLSPDLLNIMEQRLSAIEHRSACLSNLLNQPE ATPSEYARANKELRKLSGSVELINELRAKQKEIDGLKTLMAESSEDKDMLSMATEEFGQAKEEERRLQNMLLKSLLPKDD ADERDSILEVRAGSGGEEASLFAMDIFKMYEKYAHKNGWKFEVVDIAQSDMKGYKEASAAIAGAGVFGKLKFESGIHRVQ RVPVTEKLGRVHTSAVSVAILPQADEVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQDERSQHMN KAKALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHSIDDVMQGENLDVFIDALL LREEMDAVASFTSSQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 44 | 413 | 370 | 2.3E-167 | – | |
| PANTHER | 44 | 413 | 370 | 2.3E-167 | – | |
| Hamap | 58 | 412 | 355 | 34.269 | ||
| TIGRFAM | 59 | 411 | 353 | 1.1E-131 | ||
| Pfam | 66 | 258 | 193 | 1.0E-59 | ||
| SUPERFAMILY | 82 | 402 | 321 | 2.62E-114 | – | |
| Coils | 106 | 126 | 21 | - | – | |
| SMART | 118 | 233 | 116 | 5.5E-46 | ||
| Gene3D | 167 | 397 | 231 | 3.4E-92 | – | |
| Gene3D | 265 | 351 | 87 | 3.4E-92 | – | |
| Pfam | 266 | 375 | 110 | 2.0E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation release factor activity | Involved in catalyzing the release of a nascent polypeptide chain from a ribosome. | ||
| Biological process | Translational termination | The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code). | ||
| Molecular function | Translation release factor activity, codon specific | A translation release factor that is specific for one or more particular termination codons; acts at the ribosomal A-site and require polypeptidyl-tRNA at the P-site. |
Expression pattern of LotjaGi1g1v0754900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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