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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0755100 |
| Transcript ID | LotjaGi1g1v0755100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT2G26450.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q7Y201|PME13_ARATH Probable pectinesterase/pectinesterase inhibitor 13; TrEMBL-Plants: tr|V7CYQ4|V7CYQ4_PHAVU Pectinesterase; Found in the gene: LotjaGi1g1v0755100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132841482..132844224) extracted from Lotus japonicus Gifu genome v1.2.
TGATCCGAAGCCATTCAAAGCCAGAACAAAAATAACCCAGTGGCTTTGCTAGAACATAGGCAACTTGAGGTTCAAAATGG TCTCCTTCAACTATCTTTAGACACCACCAATGCTAGATAATTTGTAAAACACCACACTTTAGAAAAATAGCACTGTGTTT CAATCCATTCCGAAAACTCAGACCCAACAACAATGCTATGCCTGCCATTCACGAAGACCACAACAAGACATTGCTAAATA TACACTTTCCTTTTATTTCCTTGGTTGAAAAACCTCGAAGCACACATATAAAAACCCAACTTCATCTCCATTACTAAGCA GGATCTCCATAAAATAAAGCCTCCCCAACGAAACAGAGGGAGGAAAAAATAAAAACTTACCTTCTTTTCAACCATTATCA AAAGAAGAGAAGTTTTTGTAAAAAAAAAATAAAAAATGAAGGGGAAAATAATTATCTCCGCTGTTTCTCTCATCCTCGTA GTAGGAGTTGCCATTGGCATTGTCGTCTCTGTTCATAACAATAATGCAGACCCTGAGGTTCAAACTCAACAGAGGTCTGT CAGGACCATTTGCCAAAACACCGATGACCAGAAGCTCTGCCATGATACCCTCAGCTCCGTGAAAGGGGTTGATGCCGCCG ATCCAAAGGCTTACATCGCGACTGCGGTGAAAGCTGCCAGTGACAGCGTCATCAAAGCCTTCAACATGAGCGACCGACTC ACAACCGAGTACGGGAACAAGGACCACGGTATCAAGATGGCCCTTGACGATTGCAAGGACCTCTTGCAATCCGCCATGCA AAGTCTTGACCTTTCCACGACCCTGGTTCGCGACAACAACATCCAAGGCGTGCACAACCAGATCCCCGATTTCAGGAATT GGTTGGGCGCTGTTATCTCGTACCAACAAGCATGCATGGAAGGTTTTGACAATGACAAGGACGGTGAGAAGCAGATCAAG GAGCAACTCCATACCGAGAGCATGGACCATGTTCAGAGGATCACCGCCATCACCCTTGACATTGTCACTAGCATGACCAA AATTCTTGAGCAGTTCAACTTGAAGTTGGATCTCAAACCTGCTTCTCGTCGTCTTCTCAGTGAGGATGTTGACAATGAAG GGTACCCTTCATGGTTCTCTGCTTCTGACCGCAAGCTTTTGTCTGGGCTTCAGAGAAGAGGGTGGAGGTCACGTGTTAAG CCTAACGTCGTGGTTGCCAAGGATGGTTCTGGTCAATTCAAGAGCGTCGAAGCTGCTATTGCCTCATACCCCAAGGGATT TAAGGGAAGATATGTTATTTATGTTAAGGCTGGTGTGTATAATGAGTACATCACTGTTCCCAAGAGCGCTGCTAACATTC TCATGTACGGTGATGGCCCTACAAAGACCATCATCACCGGTCGCAAGAACTTTGCTGATGGTGTGAAGACCATGCAAACT GCCACCTTCGGTAACTTACCGCTTCCTTCTGATCACATTTCATTATTTCTGATGACTTTAGTATGCATATGTCTATGAAT CATTTTTCATATAATTATGATTCACTAATTTATCTCTACATGTATGCATGCAGCCAACCAGGCACCTGGATTCATTGCCA AGGCCATTACCTTCGAGAACACCGCCGGTCCCAACGGTCACCAAGCTGTGGCATTGAGAAACCAAGGAGATCAGTCAGCT TTCGTGGGCTGCCACATCTTGGGTTACCAAGACACCTTGTACGTTCAGACCAACAGGCAATTCTACCGCAACTGTGTCAT CTCCGGTACCATTGACTTTATCTTTGGAACCTCCCCCACCTTGATCCAACACTCCATCATCGTCGTGAGGAAGCCCAATG ACAACCAGTTCAACACTGTGACCGCAGACGGTACACCAACAAAGAACATGCCCACAGGTAAGGACATAACTAACTACTAC AAAACATTTTTTTAGTAAATTAATATTTATAGTCTGTCAACCTTACTTATTTTCTATTGCTTCGTCGCTCCTGGACACAG GTATTGTGATCCAAGATTGTGAGATTGTCCCAGAAGCCGCATTGTTCCCTGTGAGGTTCAAGATCAAGTCTTACCTCGGA AGGCCATGGAAGGAGTACTCAAGGACCGTGGTGATGGAATCTACTTTGGGTGACTTCATTCATCCAGAGGGATGGTTCCC ATGGGCTGGAAGCTTTGCCCTTGACACCTTGTACTATGCTGAGCATGCCAACACTGGACCCGGTGCCAACACTGCAGGAA GGATCAAGTGGAAGGGTTACCGTGGTGTCATTAGCAGGGCTGAGGCTACCCAATTCACAGCCGGTGAGTTCCTTAAGGCT GGACCTCGATCTGGCCTTGATTGGATCAAGGCTCTTCATGTTCCTCACTACCTTGGCTTCAAACATTAATTGATGTACAA ATTTTGAGAGTGAGCGTGATAGCACAAGGACAAATTATTGTTATTATTCTTTGTAATTATCTTTCCTATCTTTGTCGAGG AGGTCCACATGAATTAATACAAATGAAAGTTTGCTCGGATTAGTTTCAGCTTCTCAATTTTCATTTTTACTTTTGTTTGA TTCAATCAAATCATTTTTCTACTGGAACATCAGTACCATATGCACTACCTTAGAACTGAAATTTTGCCCATGGATGTAGA AAATATATAAACTGCTTGATAAAAGTTTTTTCCTCATTTTTTGTAATGCTTTGGAACTAAACATTTATAATTCAATCATA GTAAAGCAAATACAAGTTTATCG
CDS sequence (LotjaGi1g1v0755100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGGGAAAATAATTATCTCCGCTGTTTCTCTCATCCTCGTAGTAGGAGTTGCCATTGGCATTGTCGTCTCTGTTCA TAACAATAATGCAGACCCTGAGGTTCAAACTCAACAGAGGTCTGTCAGGACCATTTGCCAAAACACCGATGACCAGAAGC TCTGCCATGATACCCTCAGCTCCGTGAAAGGGGTTGATGCCGCCGATCCAAAGGCTTACATCGCGACTGCGGTGAAAGCT GCCAGTGACAGCGTCATCAAAGCCTTCAACATGAGCGACCGACTCACAACCGAGTACGGGAACAAGGACCACGGTATCAA GATGGCCCTTGACGATTGCAAGGACCTCTTGCAATCCGCCATGCAAAGTCTTGACCTTTCCACGACCCTGGTTCGCGACA ACAACATCCAAGGCGTGCACAACCAGATCCCCGATTTCAGGAATTGGTTGGGCGCTGTTATCTCGTACCAACAAGCATGC ATGGAAGGTTTTGACAATGACAAGGACGGTGAGAAGCAGATCAAGGAGCAACTCCATACCGAGAGCATGGACCATGTTCA GAGGATCACCGCCATCACCCTTGACATTGTCACTAGCATGACCAAAATTCTTGAGCAGTTCAACTTGAAGTTGGATCTCA AACCTGCTTCTCGTCGTCTTCTCAGTGAGGATGTTGACAATGAAGGGTACCCTTCATGGTTCTCTGCTTCTGACCGCAAG CTTTTGTCTGGGCTTCAGAGAAGAGGGTGGAGGTCACGTGTTAAGCCTAACGTCGTGGTTGCCAAGGATGGTTCTGGTCA ATTCAAGAGCGTCGAAGCTGCTATTGCCTCATACCCCAAGGGATTTAAGGGAAGATATGTTATTTATGTTAAGGCTGGTG TGTATAATGAGTACATCACTGTTCCCAAGAGCGCTGCTAACATTCTCATGTACGGTGATGGCCCTACAAAGACCATCATC ACCGGTCGCAAGAACTTTGCTGATGGTGTGAAGACCATGCAAACTGCCACCTTCGCCAACCAGGCACCTGGATTCATTGC CAAGGCCATTACCTTCGAGAACACCGCCGGTCCCAACGGTCACCAAGCTGTGGCATTGAGAAACCAAGGAGATCAGTCAG CTTTCGTGGGCTGCCACATCTTGGGTTACCAAGACACCTTGTACGTTCAGACCAACAGGCAATTCTACCGCAACTGTGTC ATCTCCGGTACCATTGACTTTATCTTTGGAACCTCCCCCACCTTGATCCAACACTCCATCATCGTCGTGAGGAAGCCCAA TGACAACCAGTTCAACACTGTGACCGCAGACGGTACACCAACAAAGAACATGCCCACAGGTATTGTGATCCAAGATTGTG AGATTGTCCCAGAAGCCGCATTGTTCCCTGTGAGGTTCAAGATCAAGTCTTACCTCGGAAGGCCATGGAAGGAGTACTCA AGGACCGTGGTGATGGAATCTACTTTGGGTGACTTCATTCATCCAGAGGGATGGTTCCCATGGGCTGGAAGCTTTGCCCT TGACACCTTGTACTATGCTGAGCATGCCAACACTGGACCCGGTGCCAACACTGCAGGAAGGATCAAGTGGAAGGGTTACC GTGGTGTCATTAGCAGGGCTGAGGCTACCCAATTCACAGCCGGTGAGTTCCTTAAGGCTGGACCTCGATCTGGCCTTGAT TGGATCAAGGCTCTTCATGTTCCTCACTACCTTGGCTTCAAACATTAA
Protein sequence (LotjaGi1g1v0755100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGKIIISAVSLILVVGVAIGIVVSVHNNNADPEVQTQQRSVRTICQNTDDQKLCHDTLSSVKGVDAADPKAYIATAVKA ASDSVIKAFNMSDRLTTEYGNKDHGIKMALDDCKDLLQSAMQSLDLSTTLVRDNNIQGVHNQIPDFRNWLGAVISYQQAC MEGFDNDKDGEKQIKEQLHTESMDHVQRITAITLDIVTSMTKILEQFNLKLDLKPASRRLLSEDVDNEGYPSWFSASDRK LLSGLQRRGWRSRVKPNVVVAKDGSGQFKSVEAAIASYPKGFKGRYVIYVKAGVYNEYITVPKSAANILMYGDGPTKTII TGRKNFADGVKTMQTATFANQAPGFIAKAITFENTAGPNGHQAVALRNQGDQSAFVGCHILGYQDTLYVQTNRQFYRNCV ISGTIDFIFGTSPTLIQHSIIVVRKPNDNQFNTVTADGTPTKNMPTGIVIQDCEIVPEAALFPVRFKIKSYLGRPWKEYS RTVVMESTLGDFIHPEGWFPWAGSFALDTLYYAEHANTGPGANTAGRIKWKGYRGVISRAEATQFTAGEFLKAGPRSGLD WIKALHVPHYLGFKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 31 | 31 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 2 | 574 | 573 | 7.1E-280 | – | |
| PANTHER | 2 | 574 | 573 | 7.1E-280 | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| TIGRFAM | 18 | 199 | 182 | 1.4E-21 | ||
| Phobius | 22 | 575 | 554 | - | – | |
| SMART | 37 | 196 | 160 | 2.2E-26 | ||
| Gene3D | 38 | 202 | 165 | 4.9E-18 | ||
| Pfam | 41 | 196 | 156 | 2.7E-23 | ||
| SUPERFAMILY | 41 | 201 | 161 | 5.1E-22 | ||
| CDD | 44 | 202 | 159 | 3.62944E-35 | – | |
| Gene3D | 251 | 573 | 323 | 1.4E-121 | ||
| SUPERFAMILY | 253 | 554 | 302 | 4.32E-101 | ||
| Pfam | 257 | 552 | 296 | 3.1E-129 | ||
| ProSitePatterns | 401 | 410 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi1g1v0755100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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