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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0755800 |
| Transcript ID | LotjaGi1g1v0755800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LIM domain and RING finger protein; TAIR: AT3G62240.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q76PD2|HEL2_SCHPO E3 ubiquitin-protein ligase hel2; TrEMBL-Plants: tr|K7MZM1|K7MZM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0755800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132914967..132919590) extracted from Lotus japonicus Gifu genome v1.2.
ATTGGTTCCATCCGATTCTTCTCCGAAGTTTCAGTGTCCGGGAGCGATTGATTTATTACTTTTGCCCCACGCTCGTCAAA ACTGACGGTTGAAATTATATAAAGACGAAAATCCCCGATCAACACCCAACCGTTTCTTCAAACCCTAGAAATCCACACGA TCTCTCTCTCTCTCTCTCTTACTGTGTAATCCGCGCGCGCTCTCGAATTAGGGTTCGTGTTGAGGAGTAATCGAAGAGCA GAAGCCATGGACGATTGTTGTGCTGTTTGCGCCGAGCCCTTGGAATGGGTTGCCTACGGACCCTGTTTGCACCGCGAGGT CTGCTCCACCTGCGTCGCCCGCCTCCGTTTCATTTGCGACGATCGCCGTTGTTGCATCTGCAAGACCGATTGCAACCTCG TCTTCGTCACCAAGGTATGGTTCCTAATCGCCCCCAATGCTTCCGTGTTCCTTCCTCGATTCGGTGAATTCTTTCATATG TGCCTGTTGCCCTAAACGATGAGCCTGTGCATTGAATAGCTTAAGATCTTAGAAATGCCACATTCACATGTATTGTTTAT TGTAATTCCACTTTGACGACGTGCATATTGTATCAATTGTTATCTATTCAGAAATTTCTAGCTGTCTTGAGCTATGAATC AAATCGTGAATTTTCCACTGCTTAAATCACTGTCACTTCCATTGTATTTTTTGAATATTTGATGACAAGTTTCAACACGG CATGCTTGCTTTATGGGGTTTTGTTATTGAACTGATGTAATGAAGTGTAGGGTATGTTATTTTAACTTGAATATTTGCTG TGCTTTATTTTTTCATTAAGTTGTTACTTGTTAGTAATGCATCCGGAATAGATTTTTCTCTTTGAAATTATCTACGTCAT GTTATTTCTCAACAACCCAACTGAACTAATCTGTTCATGGCTCGGTAGACTGGCTTGGTTAGGAAAGCCATAGTCAAACT CATTTCTCAGGAAAGCCCTAGTTTTCTTTCAAAATTGTAGTTTGTTTTGTTTGCTTTAACCGTCGTGAGTAGGGCTTGAT TTGTTAATTTTATATTATTTTATTGTTGCGGCGTTTTGATTCTGTTGATATTAAATTTGCTGCATTTTCCCAGGCTCTAG GAGATTATACAAGGATGATTAATGATTTTTCATCCTTGCCGGTTGAGGTAAGGGAGGGCAAGGTTGGATCGTACTGGTAT CATGAGGATACAAACACATTTTTCGATGATGTGGACCAATACAAGATGATCAAGGCTATGTGCAGGCTTTCATGCACTGT GTGTGACAAGATGGAGGAGCAACCACAAGATGTTCCAAGGAGACGAGAGAGGTTTAGGAATATAGGGCAGCTGAAGGGTC ACTTATTCCACCGTCATAAGTTGCATATGTGCGGTTTGTGTTTGGAGGGAAGGAAGGTAAATTTTTTATTATTCGCCACC AAATGAATTAATGATAATTTGTATTCCCCCCTCAACAACACACACATATTTGATTGCGAGTCCTTTGACCACCATTTCTA TCATACAGGTATTTATATGTGAGCAAAATCTATATTCTAGAGCACAGTTGAATCAACACATATGCACAGGTGATTCTGAA GTGGATGGAAGTGAGAGTGACAGAGGTGGTTTTATGGGGCATCCTATGTGTGAATTCTGCAGAACCCCATTTTATGGGGA CAATGAACTGTACACGCACATGTCTACAGAACATTATACTTGTCATATATGTCAAAGGTAACATCTAAGCCAACAATGTG TCCAAAACATGTCTTTATACTGGTCGAAACTGTTAGAACTTAGAAATGTAACACTCATGATATTTGTACCTTTAATGCAG ACAGCATCCAGGACAGTATGAATACTATAAGAGTTATGATGACCTAGAGGCAAGATATCTGTGTTGTGCTTTTATTTTAC TCTTAAAAGAAAATGGCTTTGCTAGATGTTTCCTGTTGTTTGAACTGAAAGTATTTTAATGTCTTTTGGTGCAGATCCAC TTCCGTCAAGATCACTTCTTATGTGAGGATGAGGCTTGCCTTGCTAAGAAATTTATTGTTTTTCAATCTGATTCAGAGAT GAAGGTGACTGGTTACACATTACTTATATAACACATTGATCTTTTCCTGTTTCTTAATTTTTTTTTGTTAAATAACATAT TTGGGATATGTATGTGTGCAGTACATGCACCTTGTTAATGATTCCCCATGTTTATTCATTTGGATGCTGACTATTTTTAT CTTATACTGTAATATTGGATGAGTCATTATTGTGGGGGTGTTCCTTCATTATTGAACCTCTTTTTCCTTGTTTATGGCTT AGAGACATAATGCTACTGAGCATGGAGGGCGAATGTCACGGTCAAAGCGTAATGCTGCTCTTCAGGCATGTACATTGACA AAGATTTCTTTTTGAACTTACTTTTTTGTACTGTTGGTATTCCTAGTTTCCAATGACATGATTTACTTGCCAGATCCTTC CCGCTCCCTTATAGAAGTTAAAGTATCTTTTGTTCTTTCCTTACAGATACCGACTAGTTTTCGATACAGACATGGTAGTG AACAGGACCAACGCCGTGGAAGAGGTCGTACGTTCCGTCGAGATTTTTCTGAAAATCAACTTTCTATGGCCATTGAAGCC AGTTTGCAGTCAGCTAATGATGAGTATCATATTCCATCAACATCAAGTAATGGACAAATGGCTGCTGCTGATGGGAGTGA TGACATTGATTCTATCATCCAACCTTTTGAATCGTTAGCTACAGCAGATTCTGAATCATCTGCAAGGTACCTTCAAGCCT TAGGCCACTCAAAGAATGGAGTTCTAGGAGATTCTTCCTTTCCTCCGCTTTCTGGAACTTCCAGCAATGCTCCGCAAATA TCCAAAAATGACTTGGAAGGTTCATCTAGTAACACGATGGCAGCACGTTTGCGTCGGCATGGCAAGAGAAGTGTATCTGT TGTTAATTCTGGTAATGCCTGGTCTGTAGCAGGCCGTGGACCTGTACAACCATTAAGCAATCCTTCACAATCAAAACCGT CAACAAACCTTGGTCTTGGAGTGTCTCGCAATTCTGGTCAGATGAAGACGGGAACTAATAGTGGACCTTCACCCTCTGGT CAGATGAAGACAGGAACTAACAGTGGACCTTCACCCTCAACTTATGCTAGCTCCATTCAGGCTACACAAAGAACTTCTCA TAGACAATTACCTGCTGGTTCATTGAGGGACGCACGTGACAATGGTAGAATAGTTCACTCTGCATCTGCTCCAAACCTCA TTGAGAATAATCCTGTTGAGGTTTCAATTTCAGATTTCCCTCCAGTTTCTGCTGCACAAGTGAGCAAGTTACCTACAAGC AGTCAGTCTCTGTTGAATGTGGAGAACGTTAAGTCTGCTAACAAGTCATTGGTCGATAAGATTCGCAGTGCTCTTGATTT TAATGAAGAAAGATATACTATATTTAAAGACATATCTGCGCGATATCGTCAAGGCACACTAGATACTGGTACATATGTGG ACTGTGTGCAGCAGTTTGGCTTGTCTCATCTTGTACTTGAGTTGGCAAGACTTTGCCCAGATCCTCAGAAGCAGAAAGAA CTTGTTGAGGCTTACAACGCAACTTTGCAAACAAATAGTTTTCAAGATAATAACTGGGCTTCTGGCAGCAGTAGCACCCA TCGCAAGGACAGTAATGTCGGCAAGAAAGGTAAAGGTAAGACTGTAGATGGTGGGGCAGAGAGACTAGCAGATAGTTTTT TAAGTACTGTGCATCAACTACAGTCGAGTTATGAACCTTCAGAAGAGAAGTTGGAGGTCCTATCAAAGGGCGATTACCGC ACTGACAGAGGCAAATCAAAGATCAAGCAGCCGATTGATACTAACTCTGGTAGTCAACCTAAGATGAAGGATGGCGGGCA GGCTAGAACATCAAATGCCAGCTTATCTAATCAAAATAGAGAGGATGGGGGTGGCGGGAACAAGCAACGCAAGAAAAGTT CCAAGTTCCTGAGAGTGCGCCTGGGTGATGGTTCTGCTTCGACCCTTCATGAAAACCAACACACCGAAACAGGTCCTGGA ACAACAGACAATTTAGAAGAGAACAGGAATGGCACTGGAGGAGGGCTGCCTGTGAGAGGTGTTTGGCGAACCGGGGGTGT TCACAAGCTCTTCTCCTAATTCTGCTTCGCCGCTGCTTTGAAATGTGAAGTAGCAAATGCAAGTGAACTGGCATGCGTGA ACCATAGTTGAACTAGTATAATCATAAAGGATCCTATTTTAGCTTTTGAGAGTAATGATATCCATGGAGTCTGATTTGAG TTGGATTTCAAGTATAGCAATCAGGGATATCAATTTTGTTGTCATGTTGGAAGCCAAACCGTTGCCTGAATGGGCTCATT TTGTTCGTTTTGAGGTATATTTGATAAAGTGTTAATAGGAAACTGTAGTGCCTGTCAAGTGTACTATTTACAGTATCAAA TATCTTTCGGTGAGTGTTTTGGATAGTTAAATTTAACAAGGTAATGTTGCTTAATTTACAATGTCTTGTATGGATTTCAA GTATGAAAATTAGGAAAATATCACTGATTTTATGACTAAATTTTTCAGAATTTTTTAAATGACA
CDS sequence (LotjaGi1g1v0755800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGATTGTTGTGCTGTTTGCGCCGAGCCCTTGGAATGGGTTGCCTACGGACCCTGTTTGCACCGCGAGGTCTGCTC CACCTGCGTCGCCCGCCTCCGTTTCATTTGCGACGATCGCCGTTGTTGCATCTGCAAGACCGATTGCAACCTCGTCTTCG TCACCAAGGCTCTAGGAGATTATACAAGGATGATTAATGATTTTTCATCCTTGCCGGTTGAGGTAAGGGAGGGCAAGGTT GGATCGTACTGGTATCATGAGGATACAAACACATTTTTCGATGATGTGGACCAATACAAGATGATCAAGGCTATGTGCAG GCTTTCATGCACTGTGTGTGACAAGATGGAGGAGCAACCACAAGATGTTCCAAGGAGACGAGAGAGGTTTAGGAATATAG GGCAGCTGAAGGGTCACTTATTCCACCGTCATAAGTTGCATATGTGCGGTTTGTGTTTGGAGGGAAGGAAGGTATTTATA TGTGAGCAAAATCTATATTCTAGAGCACAGTTGAATCAACACATATGCACAGGTGATTCTGAAGTGGATGGAAGTGAGAG TGACAGAGGTGGTTTTATGGGGCATCCTATGTGTGAATTCTGCAGAACCCCATTTTATGGGGACAATGAACTGTACACGC ACATGTCTACAGAACATTATACTTGTCATATATGTCAAAGACAGCATCCAGGACAGTATGAATACTATAAGAGTTATGAT GACCTAGAGATCCACTTCCGTCAAGATCACTTCTTATGTGAGGATGAGGCTTGCCTTGCTAAGAAATTTATTGTTTTTCA ATCTGATTCAGAGATGAAGAGACATAATGCTACTGAGCATGGAGGGCGAATGTCACGGTCAAAGCGTAATGCTGCTCTTC AGATACCGACTAGTTTTCGATACAGACATGGTAGTGAACAGGACCAACGCCGTGGAAGAGGTCGTACGTTCCGTCGAGAT TTTTCTGAAAATCAACTTTCTATGGCCATTGAAGCCAGTTTGCAGTCAGCTAATGATGAGTATCATATTCCATCAACATC AAGTAATGGACAAATGGCTGCTGCTGATGGGAGTGATGACATTGATTCTATCATCCAACCTTTTGAATCGTTAGCTACAG CAGATTCTGAATCATCTGCAAGGTACCTTCAAGCCTTAGGCCACTCAAAGAATGGAGTTCTAGGAGATTCTTCCTTTCCT CCGCTTTCTGGAACTTCCAGCAATGCTCCGCAAATATCCAAAAATGACTTGGAAGGTTCATCTAGTAACACGATGGCAGC ACGTTTGCGTCGGCATGGCAAGAGAAGTGTATCTGTTGTTAATTCTGGTAATGCCTGGTCTGTAGCAGGCCGTGGACCTG TACAACCATTAAGCAATCCTTCACAATCAAAACCGTCAACAAACCTTGGTCTTGGAGTGTCTCGCAATTCTGGTCAGATG AAGACGGGAACTAATAGTGGACCTTCACCCTCTGGTCAGATGAAGACAGGAACTAACAGTGGACCTTCACCCTCAACTTA TGCTAGCTCCATTCAGGCTACACAAAGAACTTCTCATAGACAATTACCTGCTGGTTCATTGAGGGACGCACGTGACAATG GTAGAATAGTTCACTCTGCATCTGCTCCAAACCTCATTGAGAATAATCCTGTTGAGGTTTCAATTTCAGATTTCCCTCCA GTTTCTGCTGCACAAGTGAGCAAGTTACCTACAAGCAGTCAGTCTCTGTTGAATGTGGAGAACGTTAAGTCTGCTAACAA GTCATTGGTCGATAAGATTCGCAGTGCTCTTGATTTTAATGAAGAAAGATATACTATATTTAAAGACATATCTGCGCGAT ATCGTCAAGGCACACTAGATACTGGTACATATGTGGACTGTGTGCAGCAGTTTGGCTTGTCTCATCTTGTACTTGAGTTG GCAAGACTTTGCCCAGATCCTCAGAAGCAGAAAGAACTTGTTGAGGCTTACAACGCAACTTTGCAAACAAATAGTTTTCA AGATAATAACTGGGCTTCTGGCAGCAGTAGCACCCATCGCAAGGACAGTAATGTCGGCAAGAAAGGTAAAGGTAAGACTG TAGATGGTGGGGCAGAGAGACTAGCAGATAGTTTTTTAAGTACTGTGCATCAACTACAGTCGAGTTATGAACCTTCAGAA GAGAAGTTGGAGGTCCTATCAAAGGGCGATTACCGCACTGACAGAGGCAAATCAAAGATCAAGCAGCCGATTGATACTAA CTCTGGTAGTCAACCTAAGATGAAGGATGGCGGGCAGGCTAGAACATCAAATGCCAGCTTATCTAATCAAAATAGAGAGG ATGGGGGTGGCGGGAACAAGCAACGCAAGAAAAGTTCCAAGTTCCTGAGAGTGCGCCTGGGTGATGGTTCTGCTTCGACC CTTCATGAAAACCAACACACCGAAACAGGTCCTGGAACAACAGACAATTTAGAAGAGAACAGGAATGGCACTGGAGGAGG GCTGCCTGTGAGAGGTGTTTGGCGAACCGGGGGTGTTCACAAGCTCTTCTCCTAA
Protein sequence (LotjaGi1g1v0755800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRRCCICKTDCNLVFVTKALGDYTRMINDFSSLPVEVREGKV GSYWYHEDTNTFFDDVDQYKMIKAMCRLSCTVCDKMEEQPQDVPRRRERFRNIGQLKGHLFHRHKLHMCGLCLEGRKVFI CEQNLYSRAQLNQHICTGDSEVDGSESDRGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKSYD DLEIHFRQDHFLCEDEACLAKKFIVFQSDSEMKRHNATEHGGRMSRSKRNAALQIPTSFRYRHGSEQDQRRGRGRTFRRD FSENQLSMAIEASLQSANDEYHIPSTSSNGQMAAADGSDDIDSIIQPFESLATADSESSARYLQALGHSKNGVLGDSSFP PLSGTSSNAPQISKNDLEGSSSNTMAARLRRHGKRSVSVVNSGNAWSVAGRGPVQPLSNPSQSKPSTNLGLGVSRNSGQM KTGTNSGPSPSGQMKTGTNSGPSPSTYASSIQATQRTSHRQLPAGSLRDARDNGRIVHSASAPNLIENNPVEVSISDFPP VSAAQVSKLPTSSQSLLNVENVKSANKSLVDKIRSALDFNEERYTIFKDISARYRQGTLDTGTYVDCVQQFGLSHLVLEL ARLCPDPQKQKELVEAYNATLQTNSFQDNNWASGSSSTHRKDSNVGKKGKGKTVDGGAERLADSFLSTVHQLQSSYEPSE EKLEVLSKGDYRTDRGKSKIKQPIDTNSGSQPKMKDGGQARTSNASLSNQNREDGGGGNKQRKKSSKFLRVRLGDGSAST LHENQHTETGPGTTDNLEENRNGTGGGLPVRGVWRTGGVHKLFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 843 | 843 | 0.0 | – | |
| PANTHER | 1 | 843 | 843 | 0.0 | – | |
| ProSiteProfiles | 5 | 46 | 42 | 8.86 | ||
| CDD | 5 | 46 | 42 | 7.77838E-17 | ||
| SMART | 108 | 144 | 37 | 36.0 | ||
| SMART | 196 | 219 | 24 | 15.0 | ||
| SMART | 220 | 250 | 31 | 14.0 | ||
| SMART | 251 | 280 | 30 | 130.0 | ||
| MobiDBLite | 303 | 320 | 18 | - | – | |
| MobiDBLite | 303 | 322 | 20 | - | – | |
| MobiDBLite | 394 | 421 | 28 | - | – | |
| MobiDBLite | 396 | 421 | 26 | - | – | |
| MobiDBLite | 444 | 532 | 89 | - | – | |
| MobiDBLite | 454 | 522 | 69 | - | – | |
| MobiDBLite | 667 | 696 | 30 | - | – | |
| MobiDBLite | 681 | 696 | 16 | - | – | |
| MobiDBLite | 712 | 832 | 121 | - | – | |
| MobiDBLite | 721 | 741 | 21 | - | – | |
| MobiDBLite | 742 | 775 | 34 | - | – | |
| MobiDBLite | 798 | 821 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0755800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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