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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0761300 |
Transcript ID | LotjaGi1g1v0761300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Myb transcription factor; TAIR: AT2G47460.1 myb domain protein 12; Swiss-Prot: sp|O22264|MYB12_ARATH Transcription factor MYB12; TrEMBL-Plants: tr|A7BJW2|A7BJW2_LOTJA MYB-related protein; Found in the gene: LotjaGi1g1v0761300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133433317..133436919) extracted from Lotus japonicus Gifu genome v1.2.
CACGACAGTATCACAGAGAAACAGCGAACGTGGCTCGTTTTACCACCACTGTTACATCTCCGTCACCGGCCCCACTTCTC TCTTTTGCCTCCCGATATAAATTACCTTTATTGATTGCAACCCCTCTTCCATTTTTGCCACCGTCACTACAAGCTGTTCA CTGTCCAACGTTATACAGAGACAACTTAAACATGCACACACCCTTTGCCACCTCAAAATTCACACATTGTAACTGAGACA CCCCTTACTTCAGCTTTCAACTTGTTGCCTGCATTACTAGTAGAGGACAAATTAGACACCTTAGATATGGGAAGAGCTCC TTGTTGTGAGAAAGTGGGACTCAAGAGGGGGAGGTGGACTGCTGAGGAGGATGAACTCTTGACCAAGTACATTCAAGCCA GTGGTGAAGGTTCTTGGAGGTCATTGCCTAAAAATGCAGGTACCAAGTTTAATTTCTCCCTGTTGAATGAGTTCATTCTT TTATTACTACATTTTTGTTTTGTGTGTTTAATTTCTTTGAATGACATTTCAAATTTGGGGGTTTTGACTTTTGAAGGATT GCTAAGATGTGGGAAGAGTTGCAGATTGAGATGGATTAACTATTTGAGAGGTGATCTTAAAAGAGGGAACATTTCTGATG AAGAGGAGAGTCTCATTGTGAAGTTGCATGCTTCTTTTGGCAACAGGTTCGTTACAGAATATATTTCATATGCTTATGTG AGTTATTTCCATTTTTGAACAAGAACAGCTCTGTTTTTAGATTTCCGTGGTAAATTTTTACTTATTTTAGATAATTTAAG ACACTAAAATAATTTATTTTTTTAATTTAGGTTTACCTGAATCCTAAAATAAACTTATATAATCATGTTCACATCAATAA TAATATAATAAGAAATCGCAGAAACCACGAGGTCCCTCATGTTTTGGAAATATGAAAAGATCGAAAAAGACCATTAAGAA TTCACATCACTTGTAAAAGTACGGTGGTGGAGGATATTTTGTCTATATATGTTTATTAGTTAGTATAATATGTCAAAGCT ATAGATGGAAATAGGATTTTACTCTATATTTTTTTTTTAAAAAAAAAACTCTTTGTTTTTTCAACTTTTGCTCCTCAATG TTCCATGAAAATTGCTATCAATACACTATGTTAAACATTTTTTCCATTTTCCAATACAATTTAAGTTATTGATTTATTTT AAAAAAAATTAACACATTTTTACATTTATTAAAAGATTATTGAATTTCAAAACAATAAACAAGTCGCCTGAAGTGCGCGA TGAAAGAAGTGTTAAAAAAGATTTCTAGTATCATGAATAATGTTCCATTCACACTTCTTTTAAAGGTGAAATGAAGAGAG AGATAGAAAGAAAATGAAAAGTAAGAGATAGAAAGTATGATATGTGATAGATGATAAGAAAATAGAGATAGAAATAAAAA TGTGTGAAAATGAAGTGTTTTAAAAATGAGGTGTGTTTATATCATTATTACTAGTAGTATCGTTTCTCATGTTCTTTTTG AACAAAAGGGGAGGACAAGTCAATGCATGAATCTCGTGTACTCAGATGTAATATTTTTTTATATATCAGAAAAATAAATA AATTACACTAAAGATTGATCTGATCTTTTTTTTTCTAACTCAAATATGTAATTCAATTCTTATCATTTGAGCTATGATTC AGGGATACCCAGATGCAATATAAAATTGTTAACTATTTTCGTTTGTAAATGAATAAACACTTTCGGTTAGTTTATTTGTA AAAACAAAACATTTTTAGTGTTTTTTAAATCTTAAAGAATCAATTTCTAAATCAATTATGATAGCTTCTTTTATAATCAA AGAACATTTGCTAACAATTAAAACTATTAAATAATTTATTTTCTTTAGCTATTTTAAAAAAAAATGGGTACATCGGAAAG ACAAATTGTACCCGCCACGAATCGATTCCTAGACTTTCTCATACCCAACTCATATGTCCCACAACTCTTACCACTTGAAA TATCCTACGAAACTAGCTATTTTAATTAATATACATAAGCTCTTTAGGACAATTAACAAATATTTTTTTATAATATTAAA ATTTGGGTTTCAGCAAGATGAGATCCGTTTGGTCAATTATATCTTTTGTCGAAATGAGATTTCTCAACATACTTCTTTCG CACTCAAAACTGGACGTAGCATGAGACCTACAAGAATGGACAGTTGCTGTACCTTTTATAAAAAAAAATATTTTAATCAA ATTTCTAACCATGAGACTAATTCCATTACTGACTGAAAAAAGTCTTGGAAAAAAGTCGGCAATAAATTCCGGATGAAAAA TAGTTGTTGGTAATTACAAATGGTTTTAAAGTTGTCGAAAAGAAAATGACCGAGTGATCGACAAGCCTAATGCTGTAATA CCCATTGTTTTTAGGCCGTTGGCTTATATGATCAAGCAATTTATTTTGAAAATTTTAAATTTTTTCTTTTTGAAAGTTGA ATAATTTAAAATTGATCAGTTAAAAATGTATTCCTAAAAACAATAAAAAAAATATTAAAATGCAATTTACCCGATGTAAT TAAAAAATTCAATAGCATTTGGTAATATTTGGTAATATGATTGTTCCAAGTTTCTTTTTTTTTTTGGTTTACATGAAAAG TTCACAAAATATTATGCAATACTCCATAAATTATTGAAAGAAAAGGACAGGACAATAAAGTGTATGGGTTTATGAGTGGG TTTCAACTTTCAACTTTCAGGTGGTCACTGATTGCAAGCCACATGCCAGGCAGAACGGACAACGAGATAAAGAACTACTG GAACTCTCACTTGAGCAGGAAATTAGTTTACACCTTCCGAGGAAGCACCACTAAATCCATCGTCGACACACCTCCCAAAC GGAGGAGATGTGGCAGAACCAGCCGCTGGGCCATGAAGAAGAACAAGACCTATTCCCTCATCAATAATGATCTCCAAAAC CAAAACAATGAACTAGAGAAAGAAGACCCTGTAGCACGGTGTGATGTGAAAGGAAGTGACGACATTTTGTGTCAGGAGGC TATTAATGTTGACGATGATGTGTTGAGTTTTCATGAGTTCATGGACACGTGCTTGATGGAACCAAGTGGGGATCATGATG TTGATGAAGAGAGAGAAAGCGCAGTGATGAATGATGGCGGAAGTGAAGGAGTGCGTGACACGTGCAGTACTGTCGACACC GTGGTAACCAGTAGGGACTCACAGTCAAAGAGTGAAAATCATAAGTTACATAATTCTTGTTCTTCTAATTCCTTAGGCTA TTCATCGGGCTTGGATTCTGTCATGGAAATGAATCGTGAAGACGAGTCATCAGTGCTGTCCAGGGAGCAGAATGAAAACC TGCTGACTTGGTTGTGGGAAGATGAAGACTGGGAAAAGGATTTTCAGATTGTTGATCCTGAGAAACATAATGACATGCTT TATTGGTTTCTCTCTTGAACCAAATCTATGTGTTCCTTCATGACATGTATATATAGTACTAGTGTGCTCAATTAATTGGT TTTAGACCATGAAGTGTGTTAATTTGTTAATCGAAAAGGTTGGGTACGTAAACACAATATTCACTGAGTCAAAAATAATA AAC
CDS sequence (LotjaGi1g1v0761300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGAGCTCCTTGTTGTGAGAAAGTGGGACTCAAGAGGGGGAGGTGGACTGCTGAGGAGGATGAACTCTTGACCAA GTACATTCAAGCCAGTGGTGAAGGTTCTTGGAGGTCATTGCCTAAAAATGCAGGATTGCTAAGATGTGGGAAGAGTTGCA GATTGAGATGGATTAACTATTTGAGAGGTGATCTTAAAAGAGGGAACATTTCTGATGAAGAGGAGAGTCTCATTGTGAAG TTGCATGCTTCTTTTGGCAACAGGTGGTCACTGATTGCAAGCCACATGCCAGGCAGAACGGACAACGAGATAAAGAACTA CTGGAACTCTCACTTGAGCAGGAAATTAGTTTACACCTTCCGAGGAAGCACCACTAAATCCATCGTCGACACACCTCCCA AACGGAGGAGATGTGGCAGAACCAGCCGCTGGGCCATGAAGAAGAACAAGACCTATTCCCTCATCAATAATGATCTCCAA AACCAAAACAATGAACTAGAGAAAGAAGACCCTGTAGCACGGTGTGATGTGAAAGGAAGTGACGACATTTTGTGTCAGGA GGCTATTAATGTTGACGATGATGTGTTGAGTTTTCATGAGTTCATGGACACGTGCTTGATGGAACCAAGTGGGGATCATG ATGTTGATGAAGAGAGAGAAAGCGCAGTGATGAATGATGGCGGAAGTGAAGGAGTGCGTGACACGTGCAGTACTGTCGAC ACCGTGGTAACCAGTAGGGACTCACAGTCAAAGAGTGAAAATCATAAGTTACATAATTCTTGTTCTTCTAATTCCTTAGG CTATTCATCGGGCTTGGATTCTGTCATGGAAATGAATCGTGAAGACGAGTCATCAGTGCTGTCCAGGGAGCAGAATGAAA ACCTGCTGACTTGGTTGTGGGAAGATGAAGACTGGGAAAAGGATTTTCAGATTGTTGATCCTGAGAAACATAATGACATG CTTTATTGGTTTCTCTCTTGA
Protein sequence (LotjaGi1g1v0761300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRAPCCEKVGLKRGRWTAEEDELLTKYIQASGEGSWRSLPKNAGLLRCGKSCRLRWINYLRGDLKRGNISDEEESLIVK LHASFGNRWSLIASHMPGRTDNEIKNYWNSHLSRKLVYTFRGSTTKSIVDTPPKRRRCGRTSRWAMKKNKTYSLINNDLQ NQNNELEKEDPVARCDVKGSDDILCQEAINVDDDVLSFHEFMDTCLMEPSGDHDVDEERESAVMNDGGSEGVRDTCSTVD TVVTSRDSQSKSENHKLHNSCSSNSLGYSSGLDSVMEMNREDESSVLSREQNENLLTWLWEDEDWEKDFQIVDPEKHNDM LYWFLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 275 | 274 | 1.2E-77 | – | |
PANTHER | 2 | 275 | 274 | 1.2E-77 | ||
ProSiteProfiles | 9 | 61 | 53 | 14.887 | ||
SUPERFAMILY | 11 | 108 | 98 | 8.8E-28 | ||
Gene3D | 11 | 67 | 57 | 5.6E-16 | – | |
SMART | 13 | 63 | 51 | 1.2E-11 | ||
Pfam | 14 | 61 | 48 | 1.1E-12 | ||
CDD | 16 | 61 | 46 | 9.55032E-9 | ||
ProSiteProfiles | 62 | 116 | 55 | 24.915 | ||
SMART | 66 | 114 | 49 | 4.6E-17 | ||
Pfam | 67 | 112 | 46 | 6.9E-14 | ||
CDD | 71 | 112 | 42 | 1.04733E-11 | ||
Gene3D | 71 | 116 | 46 | 3.0E-19 | – | |
Coils | 149 | 169 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0761300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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