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LotjaGi1g1v0764200.3

Overview

Field Value
Gene ID LotjaGi1g1v0764200
Transcript ID LotjaGi1g1v0764200.3
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description RNA-binding protein, putative; TAIR: AT2G47580.1 spliceosomal protein U1A; Swiss-Prot: sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A; TrEMBL-Plants: tr|A0A151TXR0|A0A151TXR0_CAJCA U1 small nuclear ribonucleoprotein A; Found in the gene: LotjaGi1g1v0764200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:133699803..133700210) extracted from Lotus japonicus Gifu genome v1.2.

ATGACAGAAGCGAACGCGGGTCCTGAAACCCCTCAGAACAACACCATCTACATCAACAACCTTAATGAAAAGATTAAGAT TGAAGGTCTATTCTTCATTCCCTGTTTCCTGTTTCTTCGAATCAACGCATGTTCTTCTTGTTTTGATAATTCAGTTTTTT GGATGCAGAGTTGAAGAAATCTTTGCACGCTGTTTTCAGTCAGTTCGGGAAGATACTTGAGGTGTTCGCTGCCAAGACGC TCAAGCACAAGGGTCAAGCTTGGGTGGTCTTTGAAGATCTCTCTTCTGCTTCCAATGCACTTAGGCAAATGCAAGGTTTC CCCTTCTATGACAAGCCCATGGTACCTACCATATACACTTGTTTTCTACTATTTATTTATTTGTTGTGTTTGGTGTAGTT TTAATTAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0764200.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACAGAAGCGAACGCGGGTCCTGAAACCCCTCAGAACAACACCATCTACATCAACAACCTTAATGAAAAGATTAAGAT TGAAGAGTTGAAGAAATCTTTGCACGCTGTTTTCAGTCAGTTCGGGAAGATACTTGAGGTGTTCGCTGCCAAGACGCTCA AGCACAAGGGTCAAGCTTGGGTGGTCTTTGAAGATCTCTCTTCTGCTTCCAATGCACTTAGGCAAATGCAAGGTTTCCCC TTCTATGACAAGCCCATGGTACCTACCATATACACTTGTTTTCTACTATTTATTTATTTGTTGTGTTTGGTGTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0764200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTEANAGPETPQNNTIYINNLNEKIKIEELKKSLHAVFSQFGKILEVFAAKTLKHKGQAWVVFEDLSSASNALRQMQGFP FYDKPMVPTIYTCFLLFIYLLCLV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 85 85 - –
PANTHER
PTHR10501:SF46
1 86 86 8.6E-49 –
PANTHER
PTHR10501
1 86 86 8.6E-49 –
Gene3D
G3DSA:3.30.70.330
7 92 86 5.1E-25
IPR012677
SUPERFAMILY
SSF54928
7 87 81 1.34E-20
IPR035979
ProSiteProfiles
PS50102
14 86 73 12.475
IPR000504
SMART
SM00360
15 89 75 2.5E-12
IPR000504
CDD
cd12246
15 86 72 6.84652E-46 –
Pfam
PF00076
16 85 70 8.2E-11
IPR000504
Phobius
TRANSMEMBRANE
86 103 18 - –
TMHMM
TMhelix
86 103 18 - –
Phobius
CYTOPLASMIC_DOMAIN
104 104 1 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0764200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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