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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0769100 |
| Transcript ID | LotjaGi1g1v0769100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G05620.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q9M9W7|PME22_ARATH Putative pectinesterase/pectinesterase inhibitor 22; TrEMBL-Plants: tr|A0A0L9VCS6|A0A0L9VCS6_PHAAN Pectinesterase; Found in the gene: LotjaGi1g1v0769100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134155477..134158196) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCTTGGTTAATGCCCTTTTCATTCTCATGATGCTGCTGATTTTACCCTCATCATCCAAGTCCTTCTCAGATGAAAT TCCCTCAGAAATCCAAACCCAAGACATGCAAGCCTTGATTGCACAAGCCTGCATGGACATTGAAAACCAAAACTCATGCC TCCAAAACATTCACAATGAGCTCACCAAGATTGGCCCTCCAAGCCCTACTTCAGTCCTGAGCGCTGCGCTCAGGACCACC CTCAATGAAGCACAAGGCGCCATTGACAACTTAACAAAGTTCAGCACATTCTCCGTCAGCAACCGCGAGCAAATAGCCAT AGGAGATTGCAAGGAGCTCGTTGATTTCTCTGTCTCTGAGCTGGCATGGTCATTAGGGGAGATGAGGAGAATCCGAGCAG GTAACCATGGTAGTCAAAATCGTGATTAAAATTGCATAATTGCAGCGATTAATGGTGTCCTAAAATCGCATTTGTAATCC GAGCAGGTAACCATGGTAGTCAAAATCGTGGTATACCATAAGATTATCACACTAATTTTGCTGTAAAGTGTTTTTTTATG CTATTTTATGATTATGCGATCTACAGTTAACACCCCTTTCTGATTAAGGTCATAATCCCAATTTTGACTACAATGCAGGT GACACAAGCGTGCAATATGAGGGAAACCTAGAAGCTTGGCTAAGTGCAGCACTCAGTAACCAAGATACTTGCCTTGAAGG CTTTGAAGGAACTGATAGGCGTCTTGAGAGCTACATCAGTGGAAGCTTAACACAAGTCACACAGCTTATTAGCAATGTTC TGTCTTTGTACACTCAACTTCATGCCTTACCCTTCAGGCCTCCGAGGAACAATACTCATAAAACAAGTGAAAGTTTGGAT TTGGATTCGGAGTTTCCTGAGTGGATGACTGAGGGTGATCAAGAGCTCCTTAGATCCAAGCCGCACCGTTCGCGTGCAGA CGCGGTTGTGGCATTGGATGGGAGCGGTCACTACCGCACAATCACAGAAGCTGTGAATGCAGCACCGAGTCATAGCAACA GGAGGTATGTTATATATGTGAAGAAGGGACTCTACAGGGAGAATGTGGACATGAAGAGGAAGATGACCAATATTATGCTC GTTGGTGATGGTATTGGCCAAACCATCATCACAAGCAACCGGAATTTCATGCAAGGATGGACCACTTTTCGGACTGCCAC AGTTGGTAAGTAAACTAACACCACATAACAACCTCTTGGAGCATCTTTATATTAACGTTTTGCAAGTGTTAGAAATGATT CCCTATTACGAATCTCATAATCAACTCTATCAGAGAAAAATTAATTTTGGACGACAATATTGAGATATGAGAATTATTTT GGAGAATTGATTTCAATCCCGAAATCAATTCTGCTAAAATGTAGAAAGAGTAGGTTATGCGTGGAACATAACCAATTCTA AAATTTAACAACTCAATTTCATAATATTACCCTACAAATACCAGTTTTTTTCACAAATGTACCTTCTTTTTTTCATTGGA AAGATAAATTGCATCCGTTAGAGATTGAACCCTGGACCTTCCCTACCCAACCCGCATGTCCTCTAGCTATTTCGCCAAAA CCAATTTTATTTAAAATCAATTGTGACTAAGGTGATCCAAAGCACTCACAATATTCATTTTTGGGTGTTCGATGTTTTTT TCTGAGTTTGATCCAACTAACATTGTGCCTCCGTGTGATTTCACAATTGCACTTCATATCATACAAATATCACTTTCACT TAACCAAATATAAATTACTTCACTTTAACTATGATCAATTTTATGAAAATGAATTTCCATAATCAATTTTGACACTAATC TAAAGTTCATGTTTGGCTTATGTGACCAGCTTCTAGGTCACATCATTAGTTCTTAGAAATGTAAGCTGATACAAACATAT TATAGTCATATATGTTATATGTGACTATAGTAATAACCATTTACTAGAGCTACATATACACAAAGTACTACTTCCAATCT TGATTGAAGTAATAATTGACTCATGCATATTTGTAAATGTAATATGTAGCTGTATCTGGGAAAGGTTTCATTGCGAGGGA CATGTCATTCAGAAACACTGCTGGTCCAGTAAACCACCAAGCTGTGGCACTGCGTGTTGATTCAGACCAATCCGCATTCT ACAGGTGCAGCATTGAAGGCTTCCAAGACACCCTCTACGCCCACTCCCTCCGACAGTTCTACCGCGAATGTGAAATCTAC GGCACCATAGACTTCATCTTTGGCAATGGCGCGGCGGTGCTGCAAAACTGCAAGATCTACACCAGGGCCCCACTTCCATT ACAGAAGGTAACCGTCACGGCCCAAGGAAGAAAAAGCCCACACCAGAGCACCGGGTTTACGATCCAAGATAGCTTCATTC TTGCGACCCAGCCCACGTATTTGGGCCGGCCCTGGAAGCAGTACTCGAGGACGGTTTACATTAACACGTACATGAGTGGG ATGGTGCAACCTCGAGGTTGGCTCGAGTGGTTTGGGGACTTTGCCTTGACCACATTGTGGTATGGTGAGTATAGGAATTA TGGACCTGGCGCTTCGCTCGCAGGCCGGGTCAAGTGGCCCGGTTATCATATCATGAAAGATGCTGCTACTGCTAGCTATT TTACGGTTCAGCGCTTCATTCACGGGGACTCGTGGTTGCCGGGTACTGGGGTCAAGTTCACTGCAGGCTTGACCAATTGA
CDS sequence (LotjaGi1g1v0769100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTTGGTTAATGCCCTTTTCATTCTCATGATGCTGCTGATTTTACCCTCATCATCCAAGTCCTTCTCAGATGAAAT TCCCTCAGAAATCCAAACCCAAGACATGCAAGCCTTGATTGCACAAGCCTGCATGGACATTGAAAACCAAAACTCATGCC TCCAAAACATTCACAATGAGCTCACCAAGATTGGCCCTCCAAGCCCTACTTCAGTCCTGAGCGCTGCGCTCAGGACCACC CTCAATGAAGCACAAGGCGCCATTGACAACTTAACAAAGTTCAGCACATTCTCCGTCAGCAACCGCGAGCAAATAGCCAT AGGAGATTGCAAGGAGCTCGTTGATTTCTCTGTCTCTGAGCTGGCATGGTCATTAGGGGAGATGAGGAGAATCCGAGCAG GTGACACAAGCGTGCAATATGAGGGAAACCTAGAAGCTTGGCTAAGTGCAGCACTCAGTAACCAAGATACTTGCCTTGAA GGCTTTGAAGGAACTGATAGGCGTCTTGAGAGCTACATCAGTGGAAGCTTAACACAAGTCACACAGCTTATTAGCAATGT TCTGTCTTTGTACACTCAACTTCATGCCTTACCCTTCAGGCCTCCGAGGAACAATACTCATAAAACAAGTGAAAGTTTGG ATTTGGATTCGGAGTTTCCTGAGTGGATGACTGAGGGTGATCAAGAGCTCCTTAGATCCAAGCCGCACCGTTCGCGTGCA GACGCGGTTGTGGCATTGGATGGGAGCGGTCACTACCGCACAATCACAGAAGCTGTGAATGCAGCACCGAGTCATAGCAA CAGGAGGTATGTTATATATGTGAAGAAGGGACTCTACAGGGAGAATGTGGACATGAAGAGGAAGATGACCAATATTATGC TCGTTGGTGATGGTATTGGCCAAACCATCATCACAAGCAACCGGAATTTCATGCAAGGATGGACCACTTTTCGGACTGCC ACAGTTGCTGTATCTGGGAAAGGTTTCATTGCGAGGGACATGTCATTCAGAAACACTGCTGGTCCAGTAAACCACCAAGC TGTGGCACTGCGTGTTGATTCAGACCAATCCGCATTCTACAGGTGCAGCATTGAAGGCTTCCAAGACACCCTCTACGCCC ACTCCCTCCGACAGTTCTACCGCGAATGTGAAATCTACGGCACCATAGACTTCATCTTTGGCAATGGCGCGGCGGTGCTG CAAAACTGCAAGATCTACACCAGGGCCCCACTTCCATTACAGAAGGTAACCGTCACGGCCCAAGGAAGAAAAAGCCCACA CCAGAGCACCGGGTTTACGATCCAAGATAGCTTCATTCTTGCGACCCAGCCCACGTATTTGGGCCGGCCCTGGAAGCAGT ACTCGAGGACGGTTTACATTAACACGTACATGAGTGGGATGGTGCAACCTCGAGGTTGGCTCGAGTGGTTTGGGGACTTT GCCTTGACCACATTGTGGTATGGTGAGTATAGGAATTATGGACCTGGCGCTTCGCTCGCAGGCCGGGTCAAGTGGCCCGG TTATCATATCATGAAAGATGCTGCTACTGCTAGCTATTTTACGGTTCAGCGCTTCATTCACGGGGACTCGTGGTTGCCGG GTACTGGGGTCAAGTTCACTGCAGGCTTGACCAATTGA
Protein sequence (LotjaGi1g1v0769100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALVNALFILMMLLILPSSSKSFSDEIPSEIQTQDMQALIAQACMDIENQNSCLQNIHNELTKIGPPSPTSVLSAALRTT LNEAQGAIDNLTKFSTFSVSNREQIAIGDCKELVDFSVSELAWSLGEMRRIRAGDTSVQYEGNLEAWLSAALSNQDTCLE GFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHALPFRPPRNNTHKTSESLDLDSEFPEWMTEGDQELLRSKPHRSRA DAVVALDGSGHYRTITEAVNAAPSHSNRRYVIYVKKGLYRENVDMKRKMTNIMLVGDGIGQTIITSNRNFMQGWTTFRTA TVAVSGKGFIARDMSFRNTAGPVNHQAVALRVDSDQSAFYRCSIEGFQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVL QNCKIYTRAPLPLQKVTVTAQGRKSPHQSTGFTIQDSFILATQPTYLGRPWKQYSRTVYINTYMSGMVQPRGWLEWFGDF ALTTLWYGEYRNYGPGASLAGRVKWPGYHIMKDAATASYFTVQRFIHGDSWLPGTGVKFTAGLTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| TIGRFAM | 4 | 195 | 192 | 4.2E-22 | ||
| Phobius | 6 | 16 | 11 | - | – | |
| PANTHER | 8 | 540 | 533 | 9.9E-263 | – | |
| PANTHER | 8 | 540 | 533 | 9.9E-263 | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 545 | 521 | - | – | |
| SMART | 35 | 190 | 156 | 4.6E-26 | ||
| Gene3D | 36 | 196 | 161 | 1.4E-10 | ||
| Pfam | 39 | 190 | 152 | 6.3E-21 | ||
| SUPERFAMILY | 39 | 194 | 156 | 1.96E-23 | ||
| CDD | 58 | 194 | 137 | 1.72665E-28 | – | |
| SUPERFAMILY | 238 | 542 | 305 | 8.24E-111 | ||
| Gene3D | 239 | 545 | 307 | 9.6E-127 | ||
| Pfam | 241 | 529 | 289 | 2.3E-139 | ||
| ProSitePatterns | 385 | 394 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi1g1v0769100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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