Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0769100 |
| Transcript ID | LotjaGi1g1v0769100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G05620.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q9M9W7|PME22_ARATH Putative pectinesterase/pectinesterase inhibitor 22; TrEMBL-Plants: tr|A0A0L9VCS6|A0A0L9VCS6_PHAAN Pectinesterase; Found in the gene: LotjaGi1g1v0769100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134155495..134158196) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTCATTCTCATGATGCTGCTGATTTTACCCTCATCATCCAAGTCCTTCTCAGATGAAATTCCCTCAGAAATCCAAAC CCAAGACATGCAAGCCTTGATTGCACAAGCCTGCATGGACATTGAAAACCAAAACTCATGCCTCCAAAACATTCACAATG AGCTCACCAAGATTGGCCCTCCAAGCCCTACTTCAGTCCTGAGCGCTGCGCTCAGGACCACCCTCAATGAAGCACAAGGC GCCATTGACAACTTAACAAAGTTCAGCACATTCTCCGTCAGCAACCGCGAGCAAATAGCCATAGGAGATTGCAAGGAGCT CGTTGATTTCTCTGTCTCTGAGCTGGCATGGTCATTAGGGGAGATGAGGAGAATCCGAGCAGGTAACCATGGTAGTCAAA ATCGTGATTAAAATTGCATAATTGCAGCGATTAATGGTGTCCTAAAATCGCATTTGTAATCCGAGCAGGTAACCATGGTA GTCAAAATCGTGGTATACCATAAGATTATCACACTAATTTTGCTGTAAAGTGTTTTTTTATGCTATTTTATGATTATGCG ATCTACAGTTAACACCCCTTTCTGATTAAGGTCATAATCCCAATTTTGACTACAATGCAGGTGACACAAGCGTGCAATAT GAGGGAAACCTAGAAGCTTGGCTAAGTGCAGCACTCAGTAACCAAGATACTTGCCTTGAAGGCTTTGAAGGAACTGATAG GCGTCTTGAGAGCTACATCAGTGGAAGCTTAACACAAGTCACACAGCTTATTAGCAATGTTCTGTCTTTGTACACTCAAC TTCATGCCTTACCCTTCAGGCCTCCGAGGAACAATACTCATAAAACAAGTGAAAGTTTGGATTTGGATTCGGAGTTTCCT GAGTGGATGACTGAGGGTGATCAAGAGCTCCTTAGATCCAAGCCGCACCGTTCGCGTGCAGACGCGGTTGTGGCATTGGA TGGGAGCGGTCACTACCGCACAATCACAGAAGCTGTGAATGCAGCACCGAGTCATAGCAACAGGAGGTATGTTATATATG TGAAGAAGGGACTCTACAGGGAGAATGTGGACATGAAGAGGAAGATGACCAATATTATGCTCGTTGGTGATGGTATTGGC CAAACCATCATCACAAGCAACCGGAATTTCATGCAAGGATGGACCACTTTTCGGACTGCCACAGTTGGTAAGTAAACTAA CACCACATAACAACCTCTTGGAGCATCTTTATATTAACGTTTTGCAAGTGTTAGAAATGATTCCCTATTACGAATCTCAT AATCAACTCTATCAGAGAAAAATTAATTTTGGACGACAATATTGAGATATGAGAATTATTTTGGAGAATTGATTTCAATC CCGAAATCAATTCTGCTAAAATGTAGAAAGAGTAGGTTATGCGTGGAACATAACCAATTCTAAAATTTAACAACTCAATT TCATAATATTACCCTACAAATACCAGTTTTTTTCACAAATGTACCTTCTTTTTTTCATTGGAAAGATAAATTGCATCCGT TAGAGATTGAACCCTGGACCTTCCCTACCCAACCCGCATGTCCTCTAGCTATTTCGCCAAAACCAATTTTATTTAAAATC AATTGTGACTAAGGTGATCCAAAGCACTCACAATATTCATTTTTGGGTGTTCGATGTTTTTTTCTGAGTTTGATCCAACT AACATTGTGCCTCCGTGTGATTTCACAATTGCACTTCATATCATACAAATATCACTTTCACTTAACCAAATATAAATTAC TTCACTTTAACTATGATCAATTTTATGAAAATGAATTTCCATAATCAATTTTGACACTAATCTAAAGTTCATGTTTGGCT TATGTGACCAGCTTCTAGGTCACATCATTAGTTCTTAGAAATGTAAGCTGATACAAACATATTATAGTCATATATGTTAT ATGTGACTATAGTAATAACCATTTACTAGAGCTACATATACACAAAGTACTACTTCCAATCTTGATTGAAGTAATAATTG ACTCATGCATATTTGTAAATGTAATATGTAGCTGTATCTGGGAAAGGTTTCATTGCGAGGGACATGTCATTCAGAAACAC TGCTGGTCCAGTAAACCACCAAGCTGTGGCACTGCGTGTTGATTCAGACCAATCCGCATTCTACAGGTGCAGCATTGAAG GCTTCCAAGACACCCTCTACGCCCACTCCCTCCGACAGTTCTACCGCGAATGTGAAATCTACGGCACCATAGACTTCATC TTTGGCAATGGCGCGGCGGTGCTGCAAAACTGCAAGATCTACACCAGGGCCCCACTTCCATTACAGAAGGTAACCGTCAC GGCCCAAGGAAGAAAAAGCCCACACCAGAGCACCGGGTTTACGATCCAAGATAGCTTCATTCTTGCGACCCAGCCCACGT ATTTGGGCCGGCCCTGGAAGCAGTACTCGAGGACGGTTTACATTAACACGTACATGAGTGGGATGGTGCAACCTCGAGGT TGGCTCGAGTGGTTTGGGGACTTTGCCTTGACCACATTGTGGTATGGTGAGTATAGGAATTATGGACCTGGCGCTTCGCT CGCAGGCCGGGTCAAGTGGCCCGGTTATCATATCATGAAAGATGCTGCTACTGCTAGCTATTTTACGGTTCAGCGCTTCA TTCACGGGGACTCGTGGTTGCCGGGTACTGGGGTCAAGTTCACTGCAGGCTTGACCAATTGA
CDS sequence (LotjaGi1g1v0769100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCTGCTGATTTTACCCTCATCATCCAAGTCCTTCTCAGATGAAATTCCCTCAGAAATCCAAACCCAAGACATGCA AGCCTTGATTGCACAAGCCTGCATGGACATTGAAAACCAAAACTCATGCCTCCAAAACATTCACAATGAGCTCACCAAGA TTGGCCCTCCAAGCCCTACTTCAGTCCTGAGCGCTGCGCTCAGGACCACCCTCAATGAAGCACAAGGCGCCATTGACAAC TTAACAAAGTTCAGCACATTCTCCGTCAGCAACCGCGAGCAAATAGCCATAGGAGATTGCAAGGAGCTCGTTGATTTCTC TGTCTCTGAGCTGGCATGGTCATTAGGGGAGATGAGGAGAATCCGAGCAGGTGACACAAGCGTGCAATATGAGGGAAACC TAGAAGCTTGGCTAAGTGCAGCACTCAGTAACCAAGATACTTGCCTTGAAGGCTTTGAAGGAACTGATAGGCGTCTTGAG AGCTACATCAGTGGAAGCTTAACACAAGTCACACAGCTTATTAGCAATGTTCTGTCTTTGTACACTCAACTTCATGCCTT ACCCTTCAGGCCTCCGAGGAACAATACTCATAAAACAAGTGAAAGTTTGGATTTGGATTCGGAGTTTCCTGAGTGGATGA CTGAGGGTGATCAAGAGCTCCTTAGATCCAAGCCGCACCGTTCGCGTGCAGACGCGGTTGTGGCATTGGATGGGAGCGGT CACTACCGCACAATCACAGAAGCTGTGAATGCAGCACCGAGTCATAGCAACAGGAGGTATGTTATATATGTGAAGAAGGG ACTCTACAGGGAGAATGTGGACATGAAGAGGAAGATGACCAATATTATGCTCGTTGGTGATGGTATTGGCCAAACCATCA TCACAAGCAACCGGAATTTCATGCAAGGATGGACCACTTTTCGGACTGCCACAACTGCTGGTCCAGTAAACCACCAAGCT GTGGCACTGCGTGTTGATTCAGACCAATCCGCATTCTACAGGTGCAGCATTGAAGGCTTCCAAGACACCCTCTACGCCCA CTCCCTCCGACAGTTCTACCGCGAATGTGAAATCTACGGCACCATAGACTTCATCTTTGGCAATGGCGCGGCGGTGCTGC AAAACTGCAAGATCTACACCAGGGCCCCACTTCCATTACAGAAGGTAACCGTCACGGCCCAAGGAAGAAAAAGCCCACAC CAGAGCACCGGGTTTACGATCCAAGATAGCTTCATTCTTGCGACCCAGCCCACGTATTTGGGCCGGCCCTGGAAGCAGTA CTCGAGGACGGTTTACATTAACACGTACATGAGTGGGATGGTGCAACCTCGAGGTTGGCTCGAGTGGTTTGGGGACTTTG CCTTGACCACATTGTGGTATGGTGAGTATAGGAATTATGGACCTGGCGCTTCGCTCGCAGGCCGGGTCAAGTGGCCCGGT TATCATATCATGAAAGATGCTGCTACTGCTAGCTATTTTACGGTTCAGCGCTTCATTCACGGGGACTCGTGGTTGCCGGG TACTGGGGTCAAGTTCACTGCAGGCTTGACCAATTGA
Protein sequence (LotjaGi1g1v0769100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMLLILPSSSKSFSDEIPSEIQTQDMQALIAQACMDIENQNSCLQNIHNELTKIGPPSPTSVLSAALRTTLNEAQGAIDN LTKFSTFSVSNREQIAIGDCKELVDFSVSELAWSLGEMRRIRAGDTSVQYEGNLEAWLSAALSNQDTCLEGFEGTDRRLE SYISGSLTQVTQLISNVLSLYTQLHALPFRPPRNNTHKTSESLDLDSEFPEWMTEGDQELLRSKPHRSRADAVVALDGSG HYRTITEAVNAAPSHSNRRYVIYVKKGLYRENVDMKRKMTNIMLVGDGIGQTIITSNRNFMQGWTTFRTATTAGPVNHQA VALRVDSDQSAFYRCSIEGFQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRAPLPLQKVTVTAQGRKSPH QSTGFTIQDSFILATQPTYLGRPWKQYSRTVYINTYMSGMVQPRGWLEWFGDFALTTLWYGEYRNYGPGASLAGRVKWPG YHIMKDAATASYFTVQRFIHGDSWLPGTGVKFTAGLTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 14 | 14 | - | – | |
| Phobius | 3 | 10 | 8 | - | – | |
| PANTHER | 9 | 513 | 505 | 1.2E-240 | – | |
| PANTHER | 9 | 513 | 505 | 1.2E-240 | – | |
| Phobius | 11 | 14 | 4 | - | – | |
| TIGRFAM | 13 | 185 | 173 | 1.2E-20 | ||
| Phobius | 15 | 518 | 504 | - | – | |
| SMART | 25 | 180 | 156 | 4.6E-26 | ||
| Gene3D | 26 | 186 | 161 | 1.3E-10 | ||
| Pfam | 29 | 180 | 152 | 5.7E-21 | ||
| SUPERFAMILY | 29 | 184 | 156 | 1.7E-23 | ||
| CDD | 48 | 184 | 137 | 1.57411E-28 | – | |
| SUPERFAMILY | 228 | 515 | 288 | 1.57E-100 | ||
| Gene3D | 229 | 518 | 290 | 6.5E-111 | ||
| Pfam | 312 | 502 | 191 | 1.8E-91 | ||
| ProSitePatterns | 358 | 367 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi1g1v0769100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…