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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0769200 |
| Transcript ID | LotjaGi1g1v0769200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G05610.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q8GX86|PME21_ARATH Probable pectinesterase/pectinesterase inhibitor 21; TrEMBL-Plants: tr|A0A0B2P8F5|A0A0B2P8F5_GLYSO Pectinesterase; Found in the gene: LotjaGi1g1v0769200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134160525..134163936) extracted from Lotus japonicus Gifu genome v1.2.
GTTCTATGTCACCACTTTGCAAATGTACATGATGAACCAAAAACATATTTGTCGCTTAATACTATAAAAGAAGCTAAATC CGTGTGCCTGAATTGCGGAAGAAATAAAACGCAAGTCACTAGCTATAGAGAGCATCAAGGGTGAAATATTGTCCATTTGT GGTAAATAGCTGCTAAATAAGGGTTGGTGTTTAGTTCCCTAAGCTAAAACCTCCAAAGATGTTCAACAAGAAGAAAGTTT TACCATATATAGCGTGTCATTTCCGTGTCTCATCTTATTCATTTATAGTAAAACGATAAGAGCCTCTTAGTTAGCCAAAC CTCCAAACCTCACATTCTGGCAACAGAGATAACCACCAACCCTTGAAATGGTTCCTTCTTCTAAATATAAATAAATACAC ATATATATTCCCCATCACAAAATTCACATATGCACTCTCCGGAGGGCTAGCTTTCGACGGAGAATTACACCGCCTGAGCA AGTCCTTTTTCATTTCATTTCACCCAGCAGCTCCTATTCGTGCCTAGTAAGTATACATCACAAATCAACACTAATCATTT TCTTGTTCAATCAATACAAATTTGAAGGCTTGTATAAGAAAAATACATGGATGATGAGAACATAACATCACATATATGCT TTTTAAGCAATATGGTTTGGGTAGAGAAGAGATTTTGATTCTTTACACATCGATTTCTTTTGCTTTTTTTACTGATGAAT TTTATTTTATTTTCAAAAGCAAAATATCTATTGTATTCAATAGAAGTCGAGATACTAATCAATTTAATTATTTCTCATTC TCATGTATGCTCAGGTGTTTGTTAATCAGGAGCTGCTAATTATTAAAAATGACTGGGGGAGATGCCCAAAAGAGGAAGAG AATCGCCATAATTGGAGTCTCCACCTTCTTGCTGGTGGCCATGGTGGTGGCGGTCACAGTTAGTGTCGGCTTCGGCAAGG ATGGAGCCAACGCAGATTCAAAAGAAAACAGCAAATCCAGCGTGTCTTCATCAATGAAAGCCGTGAAAACTCTATGCGCA CCCACAGATTACAAGAAGGATTGCGAGGAGAGTCTATCATCACACGCCGGAAACATCACCGACCCAAGAGAGCTCATCAA AATTGCGTTCAACGTGACCATCGCCCGAATCGGGGAAGGTTTGGAGAAATCGCAATTGTTGCAAGAAGCTGAAAAAGACC CAAGAACCAAAGAGGCTCTCGACACATGTAAGGACCTCATGCACCTCTCAATCGAGGAGTTCAAGAGATCTCTCGAGAGG TTTGGAAAGTTTGACCTCAACAACCTCGACAGCATCCTAACAAGCCTCAAGGTTTGGCTCAGTGGTGCCATAACATACCA AGAGACATGTTTGGATGCGTTTGAGAACACCACAAGCGATGCTGGTCATAAAATGGCAACCGCTTTGCAAACCGCCATGC GTATGAGCAGCAATGGTTTGTCCATCATCACTGAACTCTCCAAGACTCTTACTGAGATGCACGTGACCAAGCCTGCTGGG CGCCGCCTTTTGAAGGAGGGTGGGGACAACGAGTTTGAGCTTCCCGAATGGGTTGATGACCGTGTTGGTGTTAGGAGACT TCTGCGTATGACTGCACGAAAGCTCAGCGCGCACGTGGTTGTGGCTAAGGATGGGAGTGGAAACTTCACCACCATCAGCG AGGCATTGAAGCATGTGCCCAAGAAGAACATGAAGCCATTCATTATCTACATCAAGGAGGGGGTTTACAACGAGTATGTT GAGGTTGCAAGAAACATGACCCATGTTGTTTTTGTTGGTGATGGTGGTAAGAAGACACGGATCACTGGCAGCAAAAACTT TGTGGATGGGGTTGGTACCTTCAGAACCGCCAGTTCTGGTATGTGTTTATCTTTCGTGCTTATAGACCCGAATTATCTAA ATTCACTAGTAATTGACAAGATTTTAACATTATTATTGCTAGCAACTAGTTCCTTTCTTCGATCTTTCATCTTTTCCTTG CATGAAAGGGTGATGAATATGATCGTTATAATTAATCTTACCTAAGTGATTTTTAATTGATATGGCACAGTTTGATTGAT GAGAAATAAAATGAGACACTAAACAAGGACAAAATATCTTAATCTTGAAAGAGGGATCAAAATCCTTTGTCAACATTTGG TGTTCGTTCCTTAACCTGCCAATAAAATTGTCAAAATGTCATTTAAAAATCACTAATATTGTAAGTTTAAAAATAATTGT CATATTCAAGCATTTTTAATTGACAATATTATTTAGGAATAGTGATTTCGAATAAGTGTGTTATCAACACAACTCAAGCA TAATCATAAGTTGGCAACTCAAAAAATTTGTGCATGTGTGCAGCTATTCTTGGAGATTACTTTGTTGGAATTGGTGTCGG ATTTGAGAATTCCGCTGGAGCTGCAAAACATCAAGCAGTAGCTTTGAGGGTTCAAGCTGACAAGTCCATCTTCTACAAAT GCAGAATGGACGGGTTCCAAGACACACTCTATGCTCACACCATGCGTCAATTCTACAGGGATTGCATCATTTCAGGCACC ATCGACTTCGTCTTCGGTGATGCTGTGGCTGTTATGCAGAACTGCACTTTCGTTGTCCGAAAGCCACTAGAAAACCAGCA ATGCATTGTGACCGCACAAGGAAGGAAAGAGAGGAACCAGCCATCAGGAATAGTCATCCAAGGAGGTTCCATCGTGTCAG ATCCCAAATACTTCCCTGTCAGGTTTGACAACAAGGCCTACTTGGCACGTCCATGGAAGAATTTCTCAAGAACCATCTTC ATGGACACCTACATTGGAGACCTGATCACACCCGATGGTTACATGCCATGGCAGTTAATGGATGGAACCTTAGCTGGAAT GGACACTTGCTACTACGCTGAGTTCAACAACCGTGGACCCGGTTCAGACCAGTCCAAGCGTGTGAAATGGCCAGGGGTCA AGACCCTAACATCAGACGTTGCTATCAGTTTCTCGCCATCTAGATTCTTCCACGGAGATGACTGGATCAAGGTTACTAGA GTACCTTACAACCCTGGCAAGGTCACATTATCCCCCAGTACTCATCATTAATTGATGTTACTAATTCGTTCATATTCGAG AGAGTGCGTGGATATATATTGTTGCGAGCGAAGAAGACTAGTACTAATTATTAATGCTTGTGTTGTTCCATCTTTGTATT TTGTCTTCTGATCATCCATTTGTTCAATGGTTTGAAGTGAGTGTGTGTATTTGTACTCTCATTTTATGCCACAATTCCCA AACCACGGGTGATCGATCATGCTTGTATAGATTCGCAATTACGTTACCTTTTTTTTTCCTAGATTAACATAATTGCGTAA CTAAAATCCCCTTTGTTCACGATTTTCATCTTAAATGACTTGTTATTGGTAA
CDS sequence (LotjaGi1g1v0769200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGGGGGAGATGCCCAAAAGAGGAAGAGAATCGCCATAATTGGAGTCTCCACCTTCTTGCTGGTGGCCATGGTGGT GGCGGTCACAGTTAGTGTCGGCTTCGGCAAGGATGGAGCCAACGCAGATTCAAAAGAAAACAGCAAATCCAGCGTGTCTT CATCAATGAAAGCCGTGAAAACTCTATGCGCACCCACAGATTACAAGAAGGATTGCGAGGAGAGTCTATCATCACACGCC GGAAACATCACCGACCCAAGAGAGCTCATCAAAATTGCGTTCAACGTGACCATCGCCCGAATCGGGGAAGGTTTGGAGAA ATCGCAATTGTTGCAAGAAGCTGAAAAAGACCCAAGAACCAAAGAGGCTCTCGACACATGTAAGGACCTCATGCACCTCT CAATCGAGGAGTTCAAGAGATCTCTCGAGAGGTTTGGAAAGTTTGACCTCAACAACCTCGACAGCATCCTAACAAGCCTC AAGGTTTGGCTCAGTGGTGCCATAACATACCAAGAGACATGTTTGGATGCGTTTGAGAACACCACAAGCGATGCTGGTCA TAAAATGGCAACCGCTTTGCAAACCGCCATGCGTATGAGCAGCAATGGTTTGTCCATCATCACTGAACTCTCCAAGACTC TTACTGAGATGCACGTGACCAAGCCTGCTGGGCGCCGCCTTTTGAAGGAGGGTGGGGACAACGAGTTTGAGCTTCCCGAA TGGGTTGATGACCGTGTTGGTGTTAGGAGACTTCTGCGTATGACTGCACGAAAGCTCAGCGCGCACGTGGTTGTGGCTAA GGATGGGAGTGGAAACTTCACCACCATCAGCGAGGCATTGAAGCATGTGCCCAAGAAGAACATGAAGCCATTCATTATCT ACATCAAGGAGGGGGTTTACAACGAGTATGTTGAGGTTGCAAGAAACATGACCCATGTTGTTTTTGTTGGTGATGGTGGT AAGAAGACACGGATCACTGGCAGCAAAAACTTTGTGGATGGGGTTGGTACCTTCAGAACCGCCAGTTCTGCTATTCTTGG AGATTACTTTGTTGGAATTGGTGTCGGATTTGAGAATTCCGCTGGAGCTGCAAAACATCAAGCAGTAGCTTTGAGGGTTC AAGCTGACAAGTCCATCTTCTACAAATGCAGAATGGACGGGTTCCAAGACACACTCTATGCTCACACCATGCGTCAATTC TACAGGGATTGCATCATTTCAGGCACCATCGACTTCGTCTTCGGTGATGCTGTGGCTGTTATGCAGAACTGCACTTTCGT TGTCCGAAAGCCACTAGAAAACCAGCAATGCATTGTGACCGCACAAGGAAGGAAAGAGAGGAACCAGCCATCAGGAATAG TCATCCAAGGAGGTTCCATCGTGTCAGATCCCAAATACTTCCCTGTCAGGTTTGACAACAAGGCCTACTTGGCACGTCCA TGGAAGAATTTCTCAAGAACCATCTTCATGGACACCTACATTGGAGACCTGATCACACCCGATGGTTACATGCCATGGCA GTTAATGGATGGAACCTTAGCTGGAATGGACACTTGCTACTACGCTGAGTTCAACAACCGTGGACCCGGTTCAGACCAGT CCAAGCGTGTGAAATGGCCAGGGGTCAAGACCCTAACATCAGACGTTGCTATCAGTTTCTCGCCATCTAGATTCTTCCAC GGAGATGACTGGATCAAGGTTACTAGAGTACCTTACAACCCTGGCAAGGTCACATTATCCCCCAGTACTCATCATTAA
Protein sequence (LotjaGi1g1v0769200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTGGDAQKRKRIAIIGVSTFLLVAMVVAVTVSVGFGKDGANADSKENSKSSVSSSMKAVKTLCAPTDYKKDCEESLSSHA GNITDPRELIKIAFNVTIARIGEGLEKSQLLQEAEKDPRTKEALDTCKDLMHLSIEEFKRSLERFGKFDLNNLDSILTSL KVWLSGAITYQETCLDAFENTTSDAGHKMATALQTAMRMSSNGLSIITELSKTLTEMHVTKPAGRRLLKEGGDNEFELPE WVDDRVGVRRLLRMTARKLSAHVVVAKDGSGNFTTISEALKHVPKKNMKPFIIYIKEGVYNEYVEVARNMTHVVFVGDGG KKTRITGSKNFVDGVGTFRTASSAILGDYFVGIGVGFENSAGAAKHQAVALRVQADKSIFYKCRMDGFQDTLYAHTMRQF YRDCIISGTIDFVFGDAVAVMQNCTFVVRKPLENQQCIVTAQGRKERNQPSGIVIQGGSIVSDPKYFPVRFDNKAYLARP WKNFSRTIFMDTYIGDLITPDGYMPWQLMDGTLAGMDTCYYAEFNNRGPGSDQSKRVKWPGVKTLTSDVAISFSPSRFFH GDDWIKVTRVPYNPGKVTLSPSTHH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 42 | 42 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 8 | 578 | 571 | 0.0 | – | |
| PANTHER | 8 | 578 | 571 | 0.0 | – | |
| Phobius | 12 | 35 | 24 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 36 | 585 | 550 | - | – | |
| TIGRFAM | 52 | 210 | 159 | 1.6E-23 | ||
| SMART | 54 | 206 | 153 | 1.7E-33 | ||
| Gene3D | 55 | 212 | 158 | 1.9E-19 | ||
| SUPERFAMILY | 57 | 211 | 155 | 4.58E-30 | ||
| Pfam | 58 | 206 | 149 | 7.6E-25 | ||
| CDD | 61 | 212 | 152 | 3.98725E-45 | – | |
| Gene3D | 256 | 576 | 321 | 3.0E-116 | ||
| SUPERFAMILY | 260 | 574 | 315 | 5.23E-99 | ||
| Pfam | 262 | 562 | 301 | 1.3E-126 | ||
| ProSitePatterns | 287 | 306 | 20 | - | ||
| ProSitePatterns | 406 | 415 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi1g1v0769200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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