Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0773600 |
| Transcript ID | LotjaGi1g1v0773600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G05340.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9MA85|PP215_ARATH Pentatricopeptide repeat-containing protein At3g05340; TrEMBL-Plants: tr|A0A0R0KNE9|A0A0R0KNE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0773600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134631710..134633665) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAATCCGGAAGGAAATTCAACACCCATCTCCCTTCATGGGTAGATTCTCTCAAATCAAAGGCACCAATTTCCCAATA CCCATTTCCTGCAACCTCAGAATCTGTCCTCAACCATGCACACTTAAGCTCTCTTCTCTCAGTTTGCGGAAGAGATGGAA ATCTTCACCTTGGTTCTTCCATCCATGCCCGCATCATCAAGCAACCTCCATTTTTCAGTTTTGACAGCTCCCGACGCAAT GCCCTTTTTGTTTGGAACTCTCTCTTGTCAATGTATTCGAAATGCGGTGAACTGCAGGATGCCATCAAGCTGTTTGATCG TATGCCTGTGAGAGATACCGTGTCGTGGAATTCAATGATTTCTGGGTTTTTAAGGAACAGGGATTTCGACGCGGGTTTTA GGTTCTTTAAGCAAATGAGCGAGTCGAGGACGGTGTATTCTCGATTTGATAAAGCAACTTTGACTACAATGTTGTCAGCT TGCGATGGACCGGAATTCTCTAGTGTGAGCAGAATGATTCATGGTTTGGTATTTGTTGGTGGTTTTGAGAGGGAAATCAC AGTGGGGAATGCTCTTATAACGTCATATTTTAAATGTGGCTGTTTTTGCCAAGGAAGGCAGGTTTTTGATGAGATGATCG AGAGGAATGTTGTCACTTGGACGGCTGTGATTTCTGGTCTCGCACAAAACGAACTTTATGAGGATGGTTTGAGATTGTTC GCCCAAATGCGTGGTGGTTCAGTGAGTCCTAATACTTTGACATATTTGAGCTCGCTCATGGCTTGTTCAGGTGTACAAGC ATTGGCGGAAGGCCGCAAAATTCACGGCCTGCTCTGGAAATTGGGTATGCAGTCGGATTTATGTATTGAAAGTGCTTTGA TGGATTTGTATTCAAAGTGTGGAAGTTTAGAAGGAGCATGGCAGATTTTTGAGTCAGCTGAGGAACTCGATGGGGTTTCC TTAACTGTAATACTTGTAGCTTTTGCTCAAAATGGATTTGAGGAGGAAGCTATCCAGATATTTACGAGAATCGTGACATT GGGGATTGAAGTTGACGCCAACATGGTGTCTGCTGTTCTTGGGGTATTTGGTGTTGGCACTTCTTTGCCTCTTGGTAAGC AGATTCACTCTTTGATCATAAAAAAGAACTTCAGTCAGAATCCTTTTGTTAGTAATGGACTTATTAACATGTACTCCAAG TGCGGAGAACTGCACGACTCACTCCAAGTGTTTTATGAGATGACTCAAAAGAATTCAATTTCATGGAACTCAGTGATTGC AGCTTTTGCTCGCCACGGGGATGGTTCCAGAGCACTTCAATTTTATGAAGAGATGAGAGTGGGGGGTATAGCACCCACAG ATGTTACATTTTTGTCATTACTTCATGCTTGTAGCCATGCAGGCTTAGTTGAGAAGGGCATGGAGTTTTTGGTATCTATG ACTAGAGATCACAGATTAAGTCCCCGGTCAGAGCATTATGCCTGTGTTGTTGACATGTTAGGCAGGGCAGGACTTCTTAA AGAAGCTAAAAATTTTATTGAGGGGTTGCCTGAGAATCGTGGTGTACTGGTTTGGCAAGCATTGCTTGGTGCTTGTAGCA TACATGGTGACTCTGAGATGGGTAAATTTGCGGCTGATCAACTAATTTTAGCTGCACCAGCTAGTTCAGCTCCTCACGTT TTGATGGCAAACATATATTCTGCTGAAGGTAAATGGAAAGAGAGAGCAGGTGCCATTAAGAGAATGAAAGAGAAGGGAGT GGCAAAAGAAGTAGGTGTAAGTTGGATTGAGATAGACAAACAAGTAAGTAGTTTCGTTGTAGGGGACAAGTTGCATCCGC AAGCTGATATTATATTCTTGGAATTGTCTAGGTTGCTCAAACACCTGAAAGATGAAGGTTATGTTCCTGATAAAAGGTGT ATCCTCTATTACTTGGATCAAGATAAGAAAGATTAA
CDS sequence (LotjaGi1g1v0773600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATCCGGAAGGAAATTCAACACCCATCTCCCTTCATGGGTAGATTCTCTCAAATCAAAGGCACCAATTTCCCAATA CCCATTTCCTGCAACCTCAGAATCTGTCCTCAACCATGCACACTTAAGCTCTCTTCTCTCAGTTTGCGGAAGAGATGGAA ATCTTCACCTTGGTTCTTCCATCCATGCCCGCATCATCAAGCAACCTCCATTTTTCAGTTTTGACAGCTCCCGACGCAAT GCCCTTTTTGTTTGGAACTCTCTCTTGTCAATGTATTCGAAATGCGGTGAACTGCAGGATGCCATCAAGCTGTTTGATCG TATGCCTGTGAGAGATACCGTGTCGTGGAATTCAATGATTTCTGGGTTTTTAAGGAACAGGGATTTCGACGCGGGTTTTA GGTTCTTTAAGCAAATGAGCGAGTCGAGGACGGTGTATTCTCGATTTGATAAAGCAACTTTGACTACAATGTTGTCAGCT TGCGATGGACCGGAATTCTCTAGTGTGAGCAGAATGATTCATGGTTTGGTATTTGTTGGTGGTTTTGAGAGGGAAATCAC AGTGGGGAATGCTCTTATAACGTCATATTTTAAATGTGGCTGTTTTTGCCAAGGAAGGCAGGTTTTTGATGAGATGATCG AGAGGAATGTTGTCACTTGGACGGCTGTGATTTCTGGTCTCGCACAAAACGAACTTTATGAGGATGGTTTGAGATTGTTC GCCCAAATGCGTGGTGGTTCAGTGAGTCCTAATACTTTGACATATTTGAGCTCGCTCATGGCTTGTTCAGGTGTACAAGC ATTGGCGGAAGGCCGCAAAATTCACGGCCTGCTCTGGAAATTGGGTATGCAGTCGGATTTATGTATTGAAAGTGCTTTGA TGGATTTGTATTCAAAGTGTGGAAGTTTAGAAGGAGCATGGCAGATTTTTGAGTCAGCTGAGGAACTCGATGGGGTTTCC TTAACTGTAATACTTGTAGCTTTTGCTCAAAATGGATTTGAGGAGGAAGCTATCCAGATATTTACGAGAATCGTGACATT GGGGATTGAAGTTGACGCCAACATGGTGTCTGCTGTTCTTGGGGTATTTGGTGTTGGCACTTCTTTGCCTCTTGGTAAGC AGATTCACTCTTTGATCATAAAAAAGAACTTCAGTCAGAATCCTTTTGTTAGTAATGGACTTATTAACATGTACTCCAAG TGCGGAGAACTGCACGACTCACTCCAAGTGTTTTATGAGATGACTCAAAAGAATTCAATTTCATGGAACTCAGTGATTGC AGCTTTTGCTCGCCACGGGGATGGTTCCAGAGCACTTCAATTTTATGAAGAGATGAGAGTGGGGGGTATAGCACCCACAG ATGTTACATTTTTGTCATTACTTCATGCTTGTAGCCATGCAGGCTTAGTTGAGAAGGGCATGGAGTTTTTGGTATCTATG ACTAGAGATCACAGATTAAGTCCCCGGTCAGAGCATTATGCCTGTGTTGTTGACATGTTAGGCAGGGCAGGACTTCTTAA AGAAGCTAAAAATTTTATTGAGGGGTTGCCTGAGAATCGTGGTGTACTGGTTTGGCAAGCATTGCTTGGTGCTTGTAGCA TACATGGTGACTCTGAGATGGGTAAATTTGCGGCTGATCAACTAATTTTAGCTGCACCAGCTAGTTCAGCTCCTCACGTT TTGATGGCAAACATATATTCTGCTGAAGGTAAATGGAAAGAGAGAGCAGGTGCCATTAAGAGAATGAAAGAGAAGGGAGT GGCAAAAGAAGTAGGTGTAAGTTGGATTGAGATAGACAAACAAGTAAGTAGTTTCGTTGTAGGGGACAAGTTGCATCCGC AAGCTGATATTATATTCTTGGAATTGTCTAGGTTGCTCAAACACCTGAAAGATGAAGGTTATGTTCCTGATAAAAGGTGT ATCCTCTATTACTTGGATCAAGATAAGAAAGATTAA
Protein sequence (LotjaGi1g1v0773600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSGRKFNTHLPSWVDSLKSKAPISQYPFPATSESVLNHAHLSSLLSVCGRDGNLHLGSSIHARIIKQPPFFSFDSSRRN ALFVWNSLLSMYSKCGELQDAIKLFDRMPVRDTVSWNSMISGFLRNRDFDAGFRFFKQMSESRTVYSRFDKATLTTMLSA CDGPEFSSVSRMIHGLVFVGGFEREITVGNALITSYFKCGCFCQGRQVFDEMIERNVVTWTAVISGLAQNELYEDGLRLF AQMRGGSVSPNTLTYLSSLMACSGVQALAEGRKIHGLLWKLGMQSDLCIESALMDLYSKCGSLEGAWQIFESAEELDGVS LTVILVAFAQNGFEEEAIQIFTRIVTLGIEVDANMVSAVLGVFGVGTSLPLGKQIHSLIIKKNFSQNPFVSNGLINMYSK CGELHDSLQVFYEMTQKNSISWNSVIAAFARHGDGSRALQFYEEMRVGGIAPTDVTFLSLLHACSHAGLVEKGMEFLVSM TRDHRLSPRSEHYACVVDMLGRAGLLKEAKNFIEGLPENRGVLVWQALLGACSIHGDSEMGKFAADQLILAAPASSAPHV LMANIYSAEGKWKERAGAIKRMKEKGVAKEVGVSWIEIDKQVSSFVVGDKLHPQADIIFLELSRLLKHLKDEGYVPDKRC ILYYLDQDKKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 28 | 165 | 138 | 1.5E-24 | ||
| ProSiteProfiles | 38 | 68 | 31 | 5.404 | ||
| PANTHER | 41 | 162 | 122 | 1.6E-113 | – | |
| ProSiteProfiles | 81 | 111 | 31 | 9.701 | ||
| Pfam | 84 | 109 | 26 | 1.4E-6 | ||
| TIGRFAM | 84 | 110 | 27 | 2.1E-5 | ||
| ProSiteProfiles | 112 | 146 | 35 | 10.665 | ||
| Pfam | 112 | 161 | 50 | 1.5E-8 | ||
| TIGRFAM | 114 | 143 | 30 | 3.7E-7 | ||
| PANTHER | 171 | 275 | 105 | 1.6E-113 | – | |
| ProSiteProfiles | 185 | 215 | 31 | 7.388 | ||
| Pfam | 215 | 257 | 43 | 3.4E-9 | ||
| ProSiteProfiles | 216 | 250 | 35 | 10.907 | ||
| TIGRFAM | 218 | 252 | 35 | 4.8E-6 | ||
| Gene3D | 235 | 367 | 133 | 1.3E-18 | ||
| ProSiteProfiles | 251 | 285 | 35 | 5.229 | ||
| PANTHER | 269 | 360 | 92 | 1.6E-113 | – | |
| ProSiteProfiles | 286 | 316 | 31 | 6.906 | ||
| Pfam | 291 | 312 | 22 | 0.3 | ||
| ProSiteProfiles | 317 | 351 | 35 | 8.385 | ||
| Pfam | 319 | 349 | 31 | 0.23 | ||
| PANTHER | 364 | 580 | 217 | 1.6E-113 | – | |
| Gene3D | 368 | 482 | 115 | 4.1E-27 | ||
| ProSiteProfiles | 387 | 417 | 31 | 8.659 | ||
| Pfam | 417 | 465 | 49 | 1.1E-10 | ||
| ProSiteProfiles | 418 | 452 | 35 | 12.167 | ||
| TIGRFAM | 420 | 453 | 34 | 6.9E-7 | ||
| ProSiteProfiles | 453 | 488 | 36 | 7.892 | ||
| Gene3D | 483 | 612 | 130 | 4.8E-6 | ||
| ProSiteProfiles | 489 | 523 | 35 | 6.259 | ||
| ProSiteProfiles | 555 | 589 | 35 | 6.708 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0773600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…