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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0776600 |
| Transcript ID | LotjaGi1g1v0776600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Copine-1; TAIR: AT1G08860.1 Calcium-dependent phospholipid-binding Copine family protein; Swiss-Prot: sp|Q5XQC7|BON3_ARATH Protein BONZAI 3; TrEMBL-Plants: tr|I1JRH5|I1JRH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0776600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134870053..134876090) extracted from Lotus japonicus Gifu genome v1.2.
TTACAGCAAAGTCGCATATGGTGTGTTATTTGTTTTGCCAATGTGTCAGGCTGCTAGCGACCAAATGAGCGTTCAACAAT CTGTGTGCCAATGTATAAGCCATTGCCTCATAACGCAAAACGCGTTTTGTTGCATTCATTCATTCGTATATAAAAGCTAC AACTTGAAATACAATGCAAGTGATTAGAGAATCGCTATATTTAGCATTTAGCAAACGCGATTGTAAATTGTAAATAAAAA ATAACACATCGTCACTCGAAATTAAATTAGGGTTCTGCGAATGGGAGCGTGTTTGTCTGATTTGAAGGGAGGGAAGCAAG CGGTGGGAGGCGGCGGAGTAGGGTTCCCTCAAACTGTAACAGTCCCTGGCACTAGCACCGGCAACAATGGTGGGGGTGGG GCCAACGACGCCGTCGATCTCTTCTACACGGCGCAAGGTTTTCAAGCAATGTTCACCAGAGTTGAGGTACGATTTCGTTC ATCAATCACTGTTTGCAACTTTGCATGCTCGATTTCGCTTTTTCAACTCGTGCATTGTATTGTCTGCATCATCATAATAT GGACACACGTTTTGTCAAGTACGAGAGATAAAACAATTCAAATCATAAAAAATTGTGTATAATAGTATTATTGGTGGCAA AAATAGCAAGAATGTGTTGTTCTAGTGGTAGCCAAGTTCGATCCGTAAACTTACGGAAAATCATATGTTGGGAAAGACTC ACATCACTTGGTAGGGTCATGTAAGACTAAAAAATTGGGCGGAAATCAACATATATTATGCAAAATCAACAAAAGTTAAT TACAAAAAGTAGTATAAAATTATATATAATTGCAGCAAAAATAGCAAGAATGTGTTGTTCTAGTGGTAGCGAAGCTAGAT CCGTAAGGTTAATAAGTAACACAAGTTCAAACATAGAAAAAATCATATGTTGAGAGAGACCAACATGGTAGGTCATTAGT CCCCGAGACCGAAATATTGAGCCAAAGTCTAACATATATTAAGCAAAATCAACAGTAGTTAATCACAAAAGGTAGTATAA AATTTTGTGGAAAAGTACAGTTGAATATAATATGATTCTATTGAGAATTTGCTCTTTTTCTTTTTTTAAATATACTATTC TTTATTGTTGGAAAATGGACAAGGTGGGCAATTACTTATGATCTTCTGATCTTTTACTGCAGTTAACTCTTTCAGCATGC AACTTGCTTGATCGGGACATTGCATCCAAGGTATATTTTGTTTGAGATAAGGATGCATATTTATACAATTATCCAAAATG GTTGCCACCTTTTTTTGTTATGCACATCACGTAGCTTGTTCACTACAGATCTACAATCACGTAGCTTGTTCACTACAATT GCACTGGCCAATTCACAAGCACTATTGTATTGTCAAACTGGTCAAATATGTCTGAGTACTTGTTAATCCTGACAAGTCAA TTGTCAAACTTGTAAGCTAATGCGAACTTGCCAACCCTCAAAATCAAGTCTCCTTTGTTTATTTAATTGGTCATTTAGAT TTTATTAATGTCTGGAAATTGTACTACAACTTATTCTAAAATCAGAATCAATATTTTGGAGAAATTTAAAAAAGGATGTT ATATTTTGTTTGACTTCGCAATTTGAATAATTCAATGGTTGCTTCAGGGAATTTGACACGTTATGTTATGAAGCTTATCA TTATTTTTAATATTATGCATTAGTGCAATTTAGTTCAAACTATTGATAATTTTTTAAGTTACTTTAGTCAGGAAAACTGG ATAAAAGAAGTGGAGCCACGGTTCTTCCACAAATTCATGAAATTGTCAAGTTTCACAACCATATATTACAAAACAATTAA TATATATTTAGTCAGCAACTGCAACATAAAAAATGACTATCTTTAGGTGGCAACTTATCTGAAAGTTTCAACATCATCGT GGTGGAAGTATTATTTGTTACTTGCACGTTGTTCTAAATTGGCCTCTGTTATCATAGTTTAGCTGAATTCCTTCTTTTGT TTGTTTAAAATATTTCAGAGTGATCCCATGGTTGTTGTATATGAAAAGAAAAGAGATGGTATATTGCAAGAATTAGGTCG CACTGAAGTCATAATGAATTGTTTGAATCCAGAGTGGATTGTGAAAGTTAGTGTTGCATTTCAGTTCGAGGTTGTGCAAC CACTTGTGTAAGCTATCCTGATCTTTCCTGTGCCTATTCCTTGTTTTGCAATGAGCCTTCTTTCTGTTTAGACTTATTTG CTCTTTAACTCCCTCTCATTTTTCTTTTGTTCCAGATTTCAAGTGTATGACATTGATACAAAGTACCATAGAATTCCTGT GAAGGTTTGTGAACTATAAGCCTTAACATTTTATTCTTCATTGATGAATGAGTTCTCCTTGTGTTGTTTGTTCCATCAGG ATTTCATAGTAATGCTTCCATTTTAATTAAAAAAGACAGGGCCAACTTGTAGCCTGCTATTATTTTTTAGGAGGAAATAT TCAGCTCTATGGGGTATTAAAGTAATGGTTTCACAAAACCACTACATAATATACACTTGCACGATATTAAGTGGCCAATC ATGTCTGTGTACTTAATAATAAAAAGGCTAAAATGCACTTTTGGCCCCTAATGTTTCAAGTTTGTGCAAATTCTGCCCCT ACTCTATTTTTGTCGATGTTTCTACCCCTCATGTTTTCAAACAGTGCATCGTCTACCCCTCCGTCAGGGGTAGACGGTGC ACTGTTTGAAAACATGATGGGTAGAAACATCGACAAAAATAGATAGGGACAGAATTTACACAAACTTGAAACATCAGGGG CCAAAAATGCTTTTTAGCCTAATAAAAATCAACAGTAGATTACTGCTCCTGTGTTGTAGTTTTGAAGTGCTTAAATATTG GATAATTCATAAATTACCTTATTCAGTGGTTAAAAAGTTGCTTGTCTACAATGCTAATCATAAGCATGGTATCAACCTGT GTGATAGGTGAGATAAATGTTTGATATATTTCAATAATATAAATGTACTATGAAGTTAGAAGGGGAGTCCAGTGAATGGT TATAAGCTTTTGTGTATCATATTGCCCCAAATCTAAATTCTAAGTACCTTTTCTTGCCCATTTAGTGAATGGTTATGAAG GTGAATTTATATTTAACAATTGAAAGTTTGAATCTGTTTGTTCTTGCAGACAATTAATCTGAAAGATCAAGATTTTCTTG GAGAGGCCACATGCACTTTGTCAGAGGTCAGTTTCATTGTATTCATATATAATCATTACTTTGGATGGAGAATTGAGATT ATGGACCTTGTGTGGCACTGGTGTCTCTTCTTCATGTGTGTGCCTTTTGTCTCTGAGACAGATAGTGACTAAACAAAGCC GGAGCGTGACCTTAAGGCTCCAAAACAGAACTGGACGAGGTGGTTTAATAAGAAACCTAGGGGCAATTACTGTGCATGCT GAGGAGACTGCTGCTGCAAAGAGTGCTGTTGAGATGATCTTCCGCTGTTCACACTTGGATAACAAGGACGTTTTTTCTAA AAGCGTATATATTCAATACCCAGAAACATTCATGTTCTATTTTAAGTGCATAACTGCATATTTATTTATTGATGTTTTGG CATTTGTAAACTTTCTCATTTTCGTTTTCTTGTAGGATCCTTTTCTTAGAATATCAAGAAGGGTTGAGAGTGGAGGTTCT GTTCCCATTTGCAAGACTGAAGTTATTGACAACAATTTAAATCCAAAATGGAAACCAGTTTGTCTTAGTTTCCAGCAGTT TGGAAGCAAAGTAAGCTTTGCCACCTTTGGGCTTAATATTTTATGATGGAGAATGGACCATTTTGATATTCTAATTACTT TCTCATGCAGCTCAGATTTTTATCTAGCTTTAAAAATTTGTAACTTCTATGCAGGATAATCCACTAGTCATCGAGTGTTT TGATTTCAATAGCAGCGGCGATCATGTACTTATCGGGTAATCATGGAATTGTCGGTTATTGTTTTATTTTCTAGTTCATA GCTCCAACAGTATACTGATATCAAGGTTTATTGCTTCCCACCACCAGTAAACTGGAGAAGTCTGTGGCAGACCTTGAAAA ACTGTACAACGGGAAAGCAGGTGCAAATTTTTTCATGCCATCCAAACACCATAGACAAGACAAGGTGATTATTGGCCCAA GCAATTGAAGTATAGAACTATGTTTTGGCTCCACTTCTCTGCCTAAGCTCACCGTCTTTACAATTTCTTCCCCGTAGGTT CTTAAGGGTCAACTCTTTGTAGATCAATTTTGTGAAAAGGAACAGTTCACTTTCATTGACTACATATCCAGTGGATTTGA ACTAAACTTCATGGTTGCTGTAGATTTCACTGGTAAGTATCAATTCTATTACCGAATGTGATTACTCATCTGCTCTGTAC AGTTTGCTGAGTGCTTCAAATTTGTCCAGCTTCAAATGGAAATCCTCAACATTCAAATTCTTTGCATTACATTGATGTAT CTGGTCGGTTAAATTCATACCAAAAGGTAAGCTTGATACTTATTGTCAATGAATGATTCTGAAATTCCTCTAATCATTAA CTTGTGACTGAGACACAATAGGGATACATTCATCTGTTCCATTGTCTTGCCTAATCAACAAAGTGAATTTTTGTAGGCTA TAATGGAGGTTGGGGAAGTTATTCAGTTCTATGATTCTGATAAGCAGTTTCCTGCATGGGGCTTTGGAGGACATGTACCT GGTGGCGGCGTATCCCACTGTTTTAATCTGAATGGAAGTTCAGGTAGCTCTGAGGTGAGAGATTCTCTTTTCATTTTGGT ACAATGGTTCTTTCTTTATCCTTCATTAGAGATGGTAGAGAACTGTACAGTAATGATACTAGACTCTTCATGAAAAAGGT AGTAAACTACTGTTATTTGTCATTTTCCTCCATTGGTGAATTCAGCTTCACCTCTTTTGTGAACTAAAACATAAATTTAT GGTTACTTTTCCTTTGTGTTTATAGGTTGTAGGAGTTGAAGGGGTAATGCATGCTTATGCTACTGCATTACGCAGTGTCA CACTGTCAGGACCCACGCTGTTTGGCCCAGTTATAAACATGGCTTCACAAATGGCCGCCGAGTCCCTTTCAACACATAAC AGCACCAACTATTATGTTTTACTTATTATAACGGTGAGAAGATAATAAATTGCATTATTTTGTTGTTTGTACATGACTTT GTAGCCTGATTATGGTTAATTTCTTATAGGATGGAGTTGTTACTGATCTTCAAGAGACCGTAAATTCTCTGGTTAAAGCA TCTGACCTTCCCCTGTCGATTCTTATAGTTGGAGTTGGAAATGCTGATTTCACAAACATGGAGGTCTACTTTCTTATTAT TGTCCCAAAAATTTTTCCCCTTAGACTCCATTGATTGTTTAGTTACATGGCTTTCATTTGCTTTCAGAGAGAATAACATG AACTTATTGGCTTGCAGGTACTGGATGCTGATAATGGGCGTAGACTAGAGAGTTCTACTGGTCGTGTAGCTACACGAGAT ATAGTGCAGTTTGTCCCTATGAGAGAAGTACAAAGTAAGTACCACAAGTTAACTTGATGAGAGTCTTCCAATTTGTTACA ATTTTTCATCCCTTGCATTATTTTGTGATTCTTATCATTCCATTTCATGTTTTTTTATAGGTGGGCAAATCTCTGTTGTG CAAGCTCTTTTGGAAGAACTACCTGGACAATTTTTGACTTTCATGCGATGTAGGGACATCAAGCCAATTCCTTTCGGTTT CCCTCAAGCATGACGCAGCCAACAAGCTTTTTCTTCTAAAGATAGCTGAGACTAAGGGTTGATTGCTTTCTTTTTCTATT TTTTACTCATGAAAATAGGGGATAGTTATAACCTGTGTAAAGGGTCATAGTTATCTTTGGGATTTATAACGTAGTTTTCT CGTCATATGCTATGGATATTTTCTTATATAACATGATTTGTTCACTTTCATAATTTTTTTTGTCCACTTACCATAGTTTT ATTGCACCCCATTAATTATTTTCTCTTTATAAAAGAAC
CDS sequence (LotjaGi1g1v0776600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGCGTGTTTGTCTGATTTGAAGGGAGGGAAGCAAGCGGTGGGAGGCGGCGGAGTAGGGTTCCCTCAAACTGTAAC AGTCCCTGGCACTAGCACCGGCAACAATGGTGGGGGTGGGGCCAACGACGCCGTCGATCTCTTCTACACGGCGCAAGGTT TTCAAGCAATGTTCACCAGAGTTGAGTTAACTCTTTCAGCATGCAACTTGCTTGATCGGGACATTGCATCCAAGAGTGAT CCCATGGTTGTTGTATATGAAAAGAAAAGAGATGGTATATTGCAAGAATTAGGTCGCACTGAAGTCATAATGAATTGTTT GAATCCAGAGTGGATTGTGAAAGTTAGTGTTGCATTTCAGTTCGAGGTTGTGCAACCACTTGTATTTCAAGTGTATGACA TTGATACAAAGTACCATAGAATTCCTGTGAAGACAATTAATCTGAAAGATCAAGATTTTCTTGGAGAGGCCACATGCACT TTGTCAGAGATAGTGACTAAACAAAGCCGGAGCGTGACCTTAAGGCTCCAAAACAGAACTGGACGAGGTGGTTTAATAAG AAACCTAGGGGCAATTACTGTGCATGCTGAGGAGACTGCTGCTGCAAAGAGTGCTGTTGAGATGATCTTCCGCTGTTCAC ACTTGGATAACAAGGACGTTTTTTCTAAAAGCGATCCTTTTCTTAGAATATCAAGAAGGGTTGAGAGTGGAGGTTCTGTT CCCATTTGCAAGACTGAAGTTATTGACAACAATTTAAATCCAAAATGGAAACCAGTTTGTCTTAGTTTCCAGCAGTTTGG AAGCAAAGATAATCCACTAGTCATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATCGGTAAACTGGAGA AGTCTGTGGCAGACCTTGAAAAACTGTACAACGGGAAAGCAGGTGCAAATTTTTTCATGCCATCCAAACACCATAGACAA GACAAGGTTCTTAAGGGTCAACTCTTTGTAGATCAATTTTGTGAAAAGGAACAGTTCACTTTCATTGACTACATATCCAG TGGATTTGAACTAAACTTCATGGTTGCTGTAGATTTCACTGCTTCAAATGGAAATCCTCAACATTCAAATTCTTTGCATT ACATTGATGTATCTGGTCGGTTAAATTCATACCAAAAGGCTATAATGGAGGTTGGGGAAGTTATTCAGTTCTATGATTCT GATAAGCAGTTTCCTGCATGGGGCTTTGGAGGACATGTACCTGGTGGCGGCGTATCCCACTGTTTTAATCTGAATGGAAG TTCAGGTAGCTCTGAGGTTGTAGGAGTTGAAGGGGTAATGCATGCTTATGCTACTGCATTACGCAGTGTCACACTGTCAG GACCCACGCTGTTTGGCCCAGTTATAAACATGGCTTCACAAATGGCCGCCGAGTCCCTTTCAACACATAACAGCACCAAC TATTATGTTTTACTTATTATAACGGATGGAGTTGTTACTGATCTTCAAGAGACCGTAAATTCTCTGGTTAAAGCATCTGA CCTTCCCCTGTCGATTCTTATAGTTGGAGTTGGAAATGCTGATTTCACAAACATGGAGGTACTGGATGCTGATAATGGGC GTAGACTAGAGAGTTCTACTGGTCGTGTAGCTACACGAGATATAGTGCAGTTTGTCCCTATGAGAGAAGTACAAAGTGGG CAAATCTCTGTTGTGCAAGCTCTTTTGGAAGAACTACCTGGACAATTTTTGACTTTCATGCGATGTAGGGACATCAAGCC AATTCCTTTCGGTTTCCCTCAAGCATGA
Protein sequence (LotjaGi1g1v0776600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGACLSDLKGGKQAVGGGGVGFPQTVTVPGTSTGNNGGGGANDAVDLFYTAQGFQAMFTRVELTLSACNLLDRDIASKSD PMVVVYEKKRDGILQELGRTEVIMNCLNPEWIVKVSVAFQFEVVQPLVFQVYDIDTKYHRIPVKTINLKDQDFLGEATCT LSEIVTKQSRSVTLRLQNRTGRGGLIRNLGAITVHAEETAAAKSAVEMIFRCSHLDNKDVFSKSDPFLRISRRVESGGSV PICKTEVIDNNLNPKWKPVCLSFQQFGSKDNPLVIECFDFNSSGDHVLIGKLEKSVADLEKLYNGKAGANFFMPSKHHRQ DKVLKGQLFVDQFCEKEQFTFIDYISSGFELNFMVAVDFTASNGNPQHSNSLHYIDVSGRLNSYQKAIMEVGEVIQFYDS DKQFPAWGFGGHVPGGGVSHCFNLNGSSGSSEVVGVEGVMHAYATALRSVTLSGPTLFGPVINMASQMAAESLSTHNSTN YYVLLIITDGVVTDLQETVNSLVKASDLPLSILIVGVGNADFTNMEVLDADNGRRLESSTGRVATRDIVQFVPMREVQSG QISVVQALLEELPGQFLTFMRCRDIKPIPFGFPQA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 589 | 589 | 0.0 | – | |
| PANTHER | 1 | 589 | 589 | 0.0 | ||
| Gene3D | 56 | 197 | 142 | 1.2E-16 | ||
| CDD | 59 | 184 | 126 | 8.19232E-45 | – | |
| SMART | 60 | 173 | 114 | 2.4E-10 | ||
| SUPERFAMILY | 62 | 183 | 122 | 2.34E-17 | – | |
| ProSiteProfiles | 65 | 158 | 94 | 10.057 | ||
| Pfam | 65 | 171 | 107 | 2.8E-10 | ||
| SMART | 204 | 308 | 105 | 6.1E-7 | ||
| CDD | 206 | 301 | 96 | 2.27534E-39 | ||
| Gene3D | 208 | 332 | 125 | 1.0E-14 | ||
| SUPERFAMILY | 209 | 299 | 91 | 2.03E-15 | – | |
| Pfam | 209 | 301 | 93 | 3.2E-10 | ||
| ProSiteProfiles | 209 | 293 | 85 | 9.05 | ||
| CDD | 322 | 576 | 255 | 1.0329E-111 | ||
| SMART | 350 | 553 | 204 | 6.0E-11 | ||
| SUPERFAMILY | 350 | 536 | 187 | 2.97E-16 | ||
| ProSiteProfiles | 352 | 572 | 221 | 9.108 | ||
| Pfam | 371 | 587 | 217 | 1.3E-78 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium-dependent phospholipid binding | Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium. | ||
| Biological process | Negative regulation of cell death | Any process that decreases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death. |
Expression pattern of LotjaGi1g1v0776600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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