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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0777200 |
| Transcript ID | LotjaGi1g1v0777200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sodium/hydrogen exchanger; TAIR: AT3G05030.1 sodium hydrogen exchanger 2; Swiss-Prot: sp|Q56XP4|NHX2_ARATH Sodium/hydrogen exchanger 2; TrEMBL-Plants: tr|I1JRJ0|I1JRJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0777200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134926326..134931536) extracted from Lotus japonicus Gifu genome v1.2.
GCTTATTTCTCTCCCTTTTGTCACTGATTGTCTTCCATTTTTCTCCGAGTTTTTCTCAAACAAATATCTGCAACAAACAA ACCACATTTTTCCTTTCCTTTTCTCAACTCATTCTTCTTTTCTTTTCTCTTTCTCATGTTCTTTTGCAATTGCCACCCTC TTCTTTGTTGCAATGATGAAGTTGAGAGCTGAAAATTGAAAGCTATTCCGATTTGGTGGAACGCAAACACAAGTTTGGTT CCGTTTTTCTTTGCCTTGCCTTTTGTCAGCTCATTGTTATAATTATTTTTTTCTCTTTCTCATTTAGCTTAACATTGCCA CCATCTCCATCTTTGCAACGACATTGTTGAAAGCTGAAAACTAAAAGCTTATATAAAACCGCTACGAGGAACTCGAATAC GATCGAGTTTGGTTCCTTTGATTTCTCCCGCTGGTTTCCTTGTCACAACAACATTATGATAACATGATGTGCTCTCTATC CAAGATGTTCTTTCGTTATCATGTTGCTGGCTGCATGCCAAGCATTTTGGTAAGCATATTATTTTTTATATATATGTTTA AACCTCATGATCTATCACACCAAATTTGGTTTTTGATCGAGTGCAATAACGTCTGGTGATCCATATAATTGACTTATGAT TTTATATTATATTTCTAACACTATTTGTTTTGGTGTCAATTTTTTCTCTTCCTTGTGGAAAATCTTACATGCATGTTTGT TTCTTGCAGATAACCTTTTGTTGTTAAATCAGAAGGCTCTTTCTTATATGAATTCGGTTTGCAAAGTCCATAAAACTTTG TAACTGAGCAATAGTCAGATTAGGATACTATTTCTCCGTCGTCTCTAGGGGCAGACAAAATGGCTGTGGTGTTGAGTCAC GTGCTTTCCAAGCTTCATAGCTTATCAACTTCAGATCATGCTTCAGTAGTTTCCTTGAACCTTTTTGTGGCTCTGCTATG TGCTTGTATTGTCATTGGCCATCTTCTGGAGGAGAATCGTTGGGTGAATGAGTCTATCACTGCCCTTTTGATAGTAAGTG CTCCATCACTTTCTTCCGCTATTGGAAAATGATTCATAAACATTCGCAAAGTGCAGACACCCTGCAGACTCTTAGAGTGA AAAATGAAGAGAAAAGTAATGAGTTTCATATATGATGGAGGTAGAGATAGTCATGTAGAGAAAGGTGTCTGCAGTCCTGC ACAGTTCGGATGTCTATGCATCATTATCTGTAGCTAATTATACCAATAAGTAAACAAATGGTCAGTGATAGTAATGACTT AATCATGTTATTTCATATGGATTGTGATCTCAGGGTGTTTGCATTGGCATAGTCATTTTGTGGGTTAGTCGCGGTAAAAG CTCCCATCTTCTGGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTTCCACCTATCATATTTAATGCAGGGTAAACTT TTTGCACCCACTATCTATCACTGTCTGTCTAATTGAATGGAGGATAGTTTATCTTCTTAATTTATGCGCCATTATTAGTG ACTATATTTTTCTTCTTTGTTCTGTGTAATATATTTCAGGTTTCAGGTGAAAAAGAAGCAGTTTTTTGTTAACTTCATAA CCATCATGCTGTTTGGTGCTGTTGGTACATTAATAAGTTGTAGCATCATATCTTTTGGTATGTCTTTTGCTCTTTAATTA TATGGATTTCTTAGGTTGCTCTCTGAGATTTAAGATTTGACACGGTAACCAAATTTGGCATCTCAGGTTATTGTCAAATT GTTACTAACCTAAATATGTTGAACAAAAGCTTTTTATGATTTAAAAACATCTCTAGATACTTTTAAGAAAACTGTCCTTT ATTTGAATTGTCTAATTCTGATCTCTGACTTGAATTTTTGAAGCATTGTTTCAGGTGTCATACAAACGTTTAAGAGGATA GGAATTGGTTCACTGGAGCTAGGGGACTATCTAGGTATTGTATCATTCAATTTCATATATTTGACAACTTATTCATTATC ATAATCTGTGTATGATTAATTTTTCCAAAAAATTCAGCAATTGGTGCAATATTTGCTGCAACAGATTCTGTGTGCACATT GCAGGTTTGGAATTCATGATCTTCTTCCTCTATCTTCCAGCAACGAATTTCCGACAATTGAATTTTCTTACATTCATTGG AGTCAAAGTCATGTAGCCGTCGGATTAAGATCCGACGACTTAGATTTACATAAACAATTGTACAACTTTTAAATCTGAGC CGTCCAATTTGATCAGACGGTTACAGAAGACTAACTACAGTGAATTCCGGTAAATTTAACTGCAGATAAGCCGGATTTGC CAATTCTTAGTACTAAATTTATAAATGATGATGCAGGTTCTGAGCCAGGATGAGACACCTCTACTGTACAGTCTTGTATT TGGCGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCAAAAGTTTTGACCTTGAGCAAATAGACC ACATAGTTGCTGTGCAGTTTTTTGGCAACTTCTTGTATCTGTTTATAGCAAGCACCCTACTTGGCGTTTTGGTAGTTGCC TTGCTCCCTCTAGCTAATTTTTCTCATGTACACTTCACAAACACACACACACAATATCTATGTCAATAGTGAGCATACAC TTGCATGTTGATTGTGAATGTGGTTCTGATATTATGTGTCTTTGTTGCATTGCAGGCTGGTCTACTTAGTGCTTATGTTA TTAAGAAGTTGTATATGGGCAGGTATCAAATTGGAAAAAGTGTTTTTGCCATTGCAGTTGACCATTGTTGTTCAGAAGTT TCTAACTTTTTATGAGTATTTCATTGTTTTTAATTGTATATGCAGTTTATTCACAACAAAACTTAGTAGTATACAACTCA ATTATACAAAATAATTGAATGTTGACATATTTACTCACTAATTGCAGGCACTCAACCGATCGCGAGGTTGCTCTTATGAT GCTAATGGCATACCTTTCCTACATTTTGGCTGAAGTAAGTTTTAAAGAACTTCAGTTTTTAGCTTTATATCTATCTATTC TTGTGGTTGGCATAAAACATTAGCTGGAACTGATATTCGTACATGTTCTGCAGTTATGGTACCTGAGTGGCATTCTCACT GTATTTTTTTGTGGTATAGTTATGTCTCATTATACATGGCATAATGTGACTGAGAGCTCAAGAATCACCACCAAGTATGT GTTGTAAACTCTTCAAACTATATATGAAATTATCCAATTTGGATATATATATATATATGTGTGTGTGTATATATATATAT ATTAAGCTACCTGTTCTGTCTTTTACAGACATGCTTTTGCAACCTTGTCATTTGTTTGCGAGATCTTCATCTTCCTTTAT GTTGGTATGGATGCCTTGGACATTGAGAAATGGAGATTTGTTAGTGATAGGTATGTCCTGTCTTCCATCAAAGACTAGTA AATAATAATGACCTAACATTTTTTTGTACTAATGAAAGATTGTCGGATGTTTATCCCTGTGTTTTGCAGCCCTGGAACAT CTATTCTTGTGAGTTCAGTGTTAATGGCTCTGGTACTTGCTGGGAGAGCAGCATTTGTTTTCCCCTTATCCTTCTTATCC AACCTGACTAAAAAATCCCCAAATAGGAAAATAAGCTTCAGGCAGCAGGTATGACTAGACTGTTTCATTCTCTTCTCAGT TTTCTGAATTTAAAAATTATTCTCAAACAATTTTTTAAACCTGATTTTAAAAGAAGAATAGAAAAAACTATTTGAGCGAT ATGTTTTTCAAAACTGAAAGACCTGTGACTTGAAAACTAAAATATAAACAGAAAACATTTCTAAGATGTTTTGGGATTTC AGTCTACAAAACTAAAATAAGAACTCATGCTTCTGCAGTAAGTATTCATTTTCCAGGTTCCTTGGGCTGTCTAGTTATTT CTCACAAGTTTCCCATTCTTTTTCCTTTTAGATAATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTATCAATGGCAC TTGCCTATAATCAGGTAGGAGTTATCATTTTTAAAAAATTTGAGTTAATGATAAGCTGAGTTAACCAAAGAAAACTACAA TACAAATAGAAACCTTGGGTAGGATTTCAAAGTTGATGTTTAAAGAAAAACTGACACTCGTATAAAATGCAGTTCACCTT GTCGGGACATACTGAACTACGAGCCAATGCTATCCTGATCACCAGCACCATCAGTGTTGTGCTTTTCAGCACTGTGGTAA GACACCTATTTTACTGTCAAGGTTTCTTCTTTTCAATTTAGAGGTTATGTGATCATCACTTTCTGCATCATTGATAATTA TTGTTAGGTTAACAATATGAGATAGATCATACATATGATAGATTTCTAATCGATTTGAGTTCATAGGACAGTATCGAGAC CATGCGGACACCTCATTTTTATCTATATCTTCTCCCTATTACGTCGTATCTTATATGTTATCTAACATTTCTGTCTTTTC TCTTCTTTTCACTCTAGTATTAATTAGTTTGGGTGAAGACACCCCACTACCAAACATTTTCCAAAGAAAAAACTTTAAAG ATGGTGCTGACTTAACTTCATTACAACTTATTATCAGGTGTTTGGTTTGATGACTAAGCCGCTGATAAGGCTTTTACTTC CTGTTGGCTCCCCTCCTAAGCGGAAAAACAGCATGACAAACTTAGAGACAGAATCTTCATCACCAAAATCAATCACTGTG CCATTTCTTGGAGGTTCCCATGATTCCGAAGCAGATTACGACAGCAGTGAATTTCAAAGTGAAAGCAGTATCCGTGGCTT GCTTACCACACCAACACACACTGTTCATGGCTTATGGCGGAGGTTTGATGATGCATTTATGCGTCCAGTTTTCGGAGGCA GGGGTTTTGTTCCAGTAGAATCTACTACGGCAACTGAACGCAATGGACATCATCAGTGCCATTAAGAAGAAAGTTCAGGG AGTTCTATATAGTTTTAACCCATAAAATTTGTGTAGATCAAGTTAACTAATGTTTAAGAACACGTTATAAGTTTAGACGA GCTCGTCTGATAGTTTAGCATAGGTTGTATATCTCTCAAAAAGCTATTTTTAATTTTAGAATCTTAAACCATCGCTGTAA CACTAAAAGCGATATAAATGGACTCATGCTTTGCTAGTTCTGTATACACCATATTTTACTATAAGACAGTTTAACCTTTT ACATTTCAAAG
CDS sequence (LotjaGi1g1v0777200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTGGTGTTGAGTCACGTGCTTTCCAAGCTTCATAGCTTATCAACTTCAGATCATGCTTCAGTAGTTTCCTTGAA CCTTTTTGTGGCTCTGCTATGTGCTTGTATTGTCATTGGCCATCTTCTGGAGGAGAATCGTTGGGTGAATGAGTCTATCA CTGCCCTTTTGATAGGTGTTTGCATTGGCATAGTCATTTTGTGGGTTAGTCGCGGTAAAAGCTCCCATCTTCTGGTTTTC AGTGAAGATCTTTTCTTTATATACCTTCTTCCACCTATCATATTTAATGCAGGGTTTCAGGTGAAAAAGAAGCAGTTTTT TGTTAACTTCATAACCATCATGCTGTTTGGTGCTGTTGGTACATTAATAAGTTGTAGCATCATATCTTTTGGTGTCATAC AAACGTTTAAGAGGATAGGAATTGGTTCACTGGAGCTAGGGGACTATCTAGCAATTGGTGCAATATTTGCTGCAACAGAT TCTGTGTGCACATTGCAGGTTCTGAGCCAGGATGAGACACCTCTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAA TGATGCTACATCAGTGGTGCTTTTCAATGCAATCAAAAGTTTTGACCTTGAGCAAATAGACCACATAGTTGCTGTGCAGT TTTTTGGCAACTTCTTGTATCTGTTTATAGCAAGCACCCTACTTGGCGTTTTGGCTGGTCTACTTAGTGCTTATGTTATT AAGAAGTTGTATATGGGCAGGCACTCAACCGATCGCGAGGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATTTT GGCTGAATTATGGTACCTGAGTGGCATTCTCACTGTATTTTTTTGTGGTATAGTTATGTCTCATTATACATGGCATAATG TGACTGAGAGCTCAAGAATCACCACCAAACATGCTTTTGCAACCTTGTCATTTGTTTGCGAGATCTTCATCTTCCTTTAT GTTGGTATGGATGCCTTGGACATTGAGAAATGGAGATTTGTTAGTGATAGCCCTGGAACATCTATTCTTGTGAGTTCAGT GTTAATGGCTCTGGTACTTGCTGGGAGAGCAGCATTTGTTTTCCCCTTATCCTTCTTATCCAACCTGACTAAAAAATCCC CAAATAGGAAAATAAGCTTCAGGCAGCAGATAATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTATCAATGGCACTT GCCTATAATCAGTTCACCTTGTCGGGACATACTGAACTACGAGCCAATGCTATCCTGATCACCAGCACCATCAGTGTTGT GCTTTTCAGCACTGTGGTGTTTGGTTTGATGACTAAGCCGCTGATAAGGCTTTTACTTCCTGTTGGCTCCCCTCCTAAGC GGAAAAACAGCATGACAAACTTAGAGACAGAATCTTCATCACCAAAATCAATCACTGTGCCATTTCTTGGAGGTTCCCAT GATTCCGAAGCAGATTACGACAGCAGTGAATTTCAAAGTGAAAGCAGTATCCGTGGCTTGCTTACCACACCAACACACAC TGTTCATGGCTTATGGCGGAGGTTTGATGATGCATTTATGCGTCCAGTTTTCGGAGGCAGGGGTTTTGTTCCAGTAGAAT CTACTACGGCAACTGAACGCAATGGACATCATCAGTGCCATTAA
Protein sequence (LotjaGi1g1v0777200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVVLSHVLSKLHSLSTSDHASVVSLNLFVALLCACIVIGHLLEENRWVNESITALLIGVCIGIVILWVSRGKSSHLLVF SEDLFFIYLLPPIIFNAGFQVKKKQFFVNFITIMLFGAVGTLISCSIISFGVIQTFKRIGIGSLELGDYLAIGAIFAATD SVCTLQVLSQDETPLLYSLVFGEGVVNDATSVVLFNAIKSFDLEQIDHIVAVQFFGNFLYLFIASTLLGVLAGLLSAYVI KKLYMGRHSTDREVALMMLMAYLSYILAELWYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHAFATLSFVCEIFIFLY VGMDALDIEKWRFVSDSPGTSILVSSVLMALVLAGRAAFVFPLSFLSNLTKKSPNRKISFRQQIIIWWAGLMRGAVSMAL AYNQFTLSGHTELRANAILITSTISVVLFSTVVFGLMTKPLIRLLLPVGSPPKRKNSMTNLETESSSPKSITVPFLGGSH DSEADYDSSEFQSESSIRGLLTTPTHTVHGLWRRFDDAFMRPVFGGRGFVPVESTTATERNGHHQCH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 4 | 544 | 541 | 0.0 | ||
| PANTHER | 4 | 544 | 541 | 0.0 | – | |
| Phobius | 20 | 40 | 21 | - | – | |
| Gene3D | 21 | 448 | 428 | 7.4E-10 | ||
| TMHMM | 21 | 43 | 23 | - | – | |
| TIGRFAM | 26 | 445 | 420 | 1.7E-78 | ||
| Pfam | 29 | 443 | 415 | 6.0E-58 | ||
| Phobius | 41 | 51 | 11 | - | – | |
| Phobius | 52 | 70 | 19 | - | – | |
| TMHMM | 53 | 70 | 18 | - | – | |
| Phobius | 71 | 75 | 5 | - | – | |
| Phobius | 76 | 99 | 24 | - | – | |
| TMHMM | 77 | 95 | 19 | - | – | |
| PRINTS | 84 | 95 | 12 | 1.5E-10 | ||
| PRINTS | 98 | 112 | 15 | 1.5E-10 | ||
| Phobius | 100 | 105 | 6 | - | – | |
| Phobius | 106 | 129 | 24 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| PRINTS | 113 | 121 | 9 | 1.5E-10 | ||
| Phobius | 130 | 148 | 19 | - | – | |
| Phobius | 149 | 168 | 20 | - | – | |
| PRINTS | 153 | 163 | 11 | 1.5E-10 | ||
| Phobius | 169 | 174 | 6 | - | – | |
| Phobius | 175 | 198 | 24 | - | – | |
| Phobius | 199 | 217 | 19 | - | – | |
| Phobius | 218 | 240 | 23 | - | – | |
| TMHMM | 218 | 240 | 23 | - | – | |
| Phobius | 241 | 251 | 11 | - | – | |
| Phobius | 252 | 268 | 17 | - | – | |
| TMHMM | 262 | 284 | 23 | - | – | |
| Phobius | 269 | 273 | 5 | - | – | |
| Phobius | 274 | 292 | 19 | - | – | |
| Phobius | 293 | 303 | 11 | - | – | |
| TMHMM | 304 | 326 | 23 | - | – | |
| Phobius | 304 | 322 | 19 | - | – | |
| Phobius | 323 | 341 | 19 | - | – | |
| TMHMM | 341 | 363 | 23 | - | – | |
| Phobius | 342 | 363 | 22 | - | – | |
| Phobius | 364 | 383 | 20 | - | – | |
| TMHMM | 384 | 402 | 19 | - | – | |
| Phobius | 384 | 405 | 22 | - | – | |
| Phobius | 406 | 416 | 11 | - | – | |
| TMHMM | 417 | 436 | 20 | - | – | |
| Phobius | 417 | 437 | 21 | - | – | |
| Phobius | 438 | 547 | 110 | - | – | |
| MobiDBLite | 454 | 474 | 21 | - | – | |
| MobiDBLite | 454 | 473 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Sodium ion transport | The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Regulation of pH | Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell. | ||
| Molecular function | Solute:proton antiporter activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out). | ||
| Molecular function | Sodium:proton antiporter activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0777200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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