Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0778500.1

Overview

Field Value
Gene ID LotjaGi1g1v0778500
Transcript ID LotjaGi1g1v0778500.1
Lotus japonicus genome version Gifu v1.2
Description Proteasome subunit beta type; TAIR: AT1G56450.1 20S proteasome beta subunit G1; Swiss-Prot: sp|Q7DLR9|PSB4_ARATH Proteasome subunit beta type-4; TrEMBL-Plants: tr|A0A0S3S5A0|A0A0S3S5A0_PHAAN Proteasome subunit beta type; Found in the gene: LotjaGi1g1v0778500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:135051257..135056715) extracted from Lotus japonicus Gifu genome v1.2.

GAATATTGAAAACTATAACGTGAATTCTCCTATATTTAAGCCAACTCTCTTCTTCAACAGGTTCTGTGTTTCCTTCTTCT CTACGACTGCGACAACAACAACGATCCAAGTCATGGACTCCATAGCTGAAACCCAAAGAACTCTGTATGTATTCTCTCTC CCTTAATGCGCTTCTGTTCTGAGATTAGGGTTTTAATCGAAACCCTAAACTAATTTGATTTTAATCTTGAAATGCATTCT TCATTCTTTGCCCTAAATTTTTGTCTTCATCTTTAGGTATCCATATGTTACTGGATCCTCTGTAGTCGCTATCAAGTACA AAGATGGGATTTTGATGGCTGCTGATATGGGGGGTATGATGCTAAATCTCTTCAATTCATAGTAACAACATAGCTTTCCC TCACTCAAGTTTTGCTTTTATTTTGAGCATTCTTTGTGTACTTTGGTTCTGGTTGTTTATATTTAGCTTCTTCTTCTGCT GTTATATTTAAGCCTTATTTAGAAGAATTTATTTGAGTATTTTTTATAGCATAAGCACTTATGTTAGTGTTTCGAAGAGG TTATTTGAATAGCTCATGACGTGTCTAGAAGCTGCTTTGAGCTTATTTTCGTAAGATGTTTAGATTAGCTTATGAATCAG AGCTTAGGTTTACATATACAATATTTTCAGCTTATTTCAATAAGTTTCTCAAGCAGCTTAAGTAAGCTGTTTATCCAAAC GCATTTCTAGCTTTTGTTCCCTTCAATTTCTAATTAAGGATTTGATTGGAGTTGGACTTGTGTGTTCAAGCCAAAATGCT CGAAATCTGATTCTGGTGAAAATTTATTTCGGTTAGTGTTTTATTTTTCGTTTTGAGAAAGAAATATTCTGGATAATGAT GAATATAATGAACGCACAAATTTGATTCCTTATAAGCGCTGGTTTTAGTAGAAGTGAAATTTGATTTGTAAATGTGCCAT GACAATGATGGATATAATGAATAGGTTCATATGGGTCTACCCTGCGGTACAAGAGTGTTGAGCGTGTGAAGCCTATTGGA AAACACTCTCTTCTTGGTGCTAGCGGGGAAATAAGTGACTTCCAGGAGATTCTACGCTACCTTGATGAGCTTATGTGAGG ACCCTTCTTTTTTAAATTATAAATGTTGCTAAGGATGCACTGTGGATTTCAGATAATGCAAGGCTTTATTTTCTTTTCTT GGTTTAATTTCTTACTTCTCTTACGATGTATTTCTCCCAAATTAACTGTTGGTTGAGTTTTGACTGCTGCAGCCTTAATG ACAACATGTGGGATGATGGGAATTCTCTTGGGCCTAAGGAGGTGCACAACTATTTGACAAGGATGATGTATAATAGACGC AACAAGTTCAATCCATTGTGGAACTCTCTTGTGCTTGGTGGTGTGAAAAACGGGCAGAAGTACCTTGGCACGGTATGCCT TTGTCTTCATTATTCAGTTCAACTTTTAAGGTACCTGCAAGGTTTTCTTATTTTTTCTATCTGTACATCTTATTCAGGTT AACATGATTGGCATGAGTTTTGAAGACAACCATGTTGCAACCGGGCTTGGAAATCATCTTGCTAGGCCAATTCTCCGTGA TGAATGGCATGAAAACTTGACCTTTGAAGAAGCTGTCAGGTTACTGGAAAAATGCATGCGCGTGCTTTTGTACCGCGATA GGTCTGCTGTCAACAAAATTCAGGTTTTGTCCTGTTTCCTTTTATTGCTTCACTCTGCACTTCCTCTGCCACTTCCTTAT ATACAACTTATCCAAACTAATTTTCAAAACACATCAACACATGATGTAAGTGAAATCTTGTATTATTGTTCGTATCTTGT TCACCTCTGTTGAGTGGTAGTATGCCCATGTTCCAATGGCTAGGTGCAACATTTAGGAGAACATTCTTCTCAAATTTCCA TGTTTTTCATTTATCTTTTAAGATTTTAGTCAACATTTTGATTGATTTTGGATTATAGATGGAATCTAAAAAGGTTTTGA AATTCAATGGTGATTAGTTTGTAGTTTTCTCAACTTTCTCTATATTCTTGTCATTGTTTATGGAGCCACATAATTTTAGT TAGAAGCTTTAGAGATCACATTTAATGCAAGAGAAGGATGTAGTCCAGGCCATAGCATTTGTAAGAAAGTTCCATTGGTA GGATTTTAGCTGCCATGCAATAACTCACATCACATGGCACCTAGGTTTCTATGTGTGTCAGCTGTTTGAAATAAGCTGCT AGAAAGTGAGAAAAACATCTACAAAGGCATCTTCTGAATTCATTTATTGAACAGTGTGTACAAGGGACGGAAATTCTTAT AGCAGTGTGAGAGATCCAACTGTTTCAGCTGTATAGTAAGCTTACAATTAACTAACAAGTCAATAAGTGAATCCACATAG GCTAGGATATGAGATTACAACCAGAATATTTAAGCCAAGATTAACAGTATACTCTAACTATTGCCTTTAGTCCTCTACTT GAGGTTGGATCCTGATGGGTCTTATCTCTACTTTTAGTCCAAAGGATAGAAAGGTAGGTTTCTGGACAGCCTAGTGCTGT ATTATACTTACGTGAAATAATTTCTGAATCCAGAATAATGAGGATGTTTCCTACATTCCTTGCATATAATAAAACCTAGA ATTATTAATTTTTGAGTTAAATATGTTTTTCATCCCCGTAAAATTTGTATTTTTTATTTTAGACCCTATTACAACTTCCT TTGTTTTTTTGTCATTACAAATTACACAATTGGTCATATGGTTTGTCTTGAAAGACTAAAACCGCATAACTTTTGTATTT TTGTAAGAACTAAAAACGAATAAAATTTCGATAGCAACTAAAATAAAAATGCAACAAGTTTTACAGAGACGAAAAACATA TTAAACCCTTGATTACCTGCGAAATGAGGGCAACCTTAGAACCTTGTACTGGCAGAAAGTGAATGACTATATGATGATAT TGATGATATAGTATAACCATCGATCTGTGGTTGTGTTGTGTTTCCTTACCGCAGATGATTTTTGGTACTAAATTAGATAT GTGCAAGAGTAATATCAGTTCACTTGTTTAATTTTACCAAAAAGTACACGTACTTATATTATAACTGAGTTAAGCAACTC TAGCTACAGGGGATCCGGTTCATTGCTAGTTATTTTACAAGACTAACTGCAAGGTGAAAACACCTAGAAGATGTTTGCTT GCTTGTCGAGTACCATATAGTTCTATCACTTGCTGATCTTGTTTCTAATCATCTTGTTCAGCATCTGTGAAAAAGTTCCA ATTTTTTTGCTGTATTATGTTCTTAGGTAGGGTTTGGCCCAACTTATTTGTAGCTTAAAAGTTCCTTAAAAGTAAAAGTT GGGCCAAACAGAATTTCAAAGAAGCTCTTAAAATGAAAGTTACTTATATTTTTATGAAGGAAATATTGATAAAAGCTCTA GAATTAAAAGTTAATCTGAGTCACTTTTATCTAAAAAGCTACTTATTTTTTGGAGTCATCCCAACCTCCCCCACTGATTC TTTGGGTCGGTCTCCCCCTCATCTTCCAAAAACCATCTTCTTCCTCTTCGTATGATTAAATCCTAATTTATTATCTTCTT CATCCAAACCTTTGCTGTAATTTGTTTTCTTATTTTCTACCTATGATTTGTCAAACGCTCATTTCTATTATGGGGATACA ATTGGGTCTTGAATACATTAATTTAGGGTTTATTCTTTACTGATCCTTTTCCTCTTGTTGCTCGGTGATTGTGAACACTA ATTAATTTAGGGTTGCAATGAACATATCATTAATACATTATCTAGTGTTTCAGTGTCTCCTTCATTTTTCCCAGTGATTC TTTAATCTCGCGCGTAGCCCAATTCGATGTGGTTACTTGCGATTCATATACCAGACACAGATTGTGAACATGAACACACA CTGCAACCTTGACTTCGCCTGTGTGGATATCATTTTGGTGAAGATGAGTTGATTATACATTTATTCTCGTAAAGTCGTAA TAAAATAAAGGATTGAGAAATTAGAGAAAGACGATACAGTAAAAAATGGTGATAGACTTCGTTAAGGATTGGACACCGTT TTTATGACAGATTTGTAAAAAAATGATGAATTTCTAAAATGAATTGACAAACAGCTTTTTACTTTTTATTTTAGTTCTTA TTTTTAACTTTTACTTTTAAGGAGCTTTTAAGCTACAAATAAGTTGGGCCAAACACTACCTTAGTGTTGGTTGGTGATCA TTGTGACAGTCAGTTGCTGTGCTTCTTATTTCATAATTCATATTACAATTCTTTCGTGTTAAACTATATATATGTTGAAG ATGCTAAATCCGGTAAACTAAGAACCTTATTTCCATCCTTACTATCATGTGTATATGAGGATTGATGCTTGGATTTCAAC TAAATGATTTTGCTTCCTTCCCCTGTTGTTGGGTCTCAATATAGATTTCAAATTCAGATGAATTGAATGGATTATCTGTT TCTTTTTGATGTTTAGTATATCTATATTGTTGAATTTGTAGATATCTAAAATTACTGAAGAAGGTTCTACTGTTTACGCA CCGTTTTCGTTGAAAACATACTGGGACTTCTCTGCCTTCAAGAATCCAACAGCAGGTGCTGAAGGTTCATGGTAGCTGGT TTGATGTGGAATGGAATGAAACAGAGTTGCAAATGCATTTGAAATGGATTCAAACAGACTTCTCTGCCTTCATTATGTTG TATGGGATATGAAATGAGCCAGCCTTCTAAAGTAAAACAAGACTTAATATTGTGTTTGAATTGATCTCTCTATTTCATTA GAATTTCTCTTGCAGTTAATCGTTTTTTTTTTTCATCATGGTCATTTGTTCCTTTCTTAATTTTTTGCATTGACATAAAA GAGGTGCATATGTCTAAAGATTTGTTGACAAATTTCATTCGTTATACTTTTCCTGTCAAACTAGAAAAAATCAGTTTGTG CATTGAGCTAACATGAGCCTTTTGTTCCCTTGGCTTCCAGTAATATGTTTGAAGAATATTTTTTTATATCTCATTAAAAT GTCAGCTCAGATAATATGCCACCCATGTATATAAAATATAAAGTTTTATGCAACAAATGTGAATAAAACAGGGAAATTTT TTATAAAGAAATTTTATAAAGTGGATAAATAATAATTTTGATTTTAAGTCTGCTCTACCCCGAATACGAATTACTAAAAC GAAATAGATAGTAAGCAGGGAAATTCGAAACTGAGACGGAACCTTAGGTGATTATCCACCACTTGTTCTCAAAATAATAA AAACAAGGGTTAATCATCTACTTGGTCCCTGTGGTTGTGTGGCCGTCTGAAATTAGTCCCTCCCCGGAAAATCTGAAAAT CTAAGTCCTCGTGTTTGGAAAGTGTGTGGAAATTAGTCCCTCCGGCGAGGACCTGCTCCACACACTTTCCAAAACACGAG GACTTAGATTTTCAGATTT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0778500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACTCCATAGCTGAAACCCAAAGAACTCTGTATCCATATGTTACTGGATCCTCTGTAGTCGCTATCAAGTACAAAGA TGGGATTTTGATGGCTGCTGATATGGGGGGTTCATATGGGTCTACCCTGCGGTACAAGAGTGTTGAGCGTGTGAAGCCTA TTGGAAAACACTCTCTTCTTGGTGCTAGCGGGGAAATAAGTGACTTCCAGGAGATTCTACGCTACCTTGATGAGCTTATC CTTAATGACAACATGTGGGATGATGGGAATTCTCTTGGGCCTAAGGAGGTGCACAACTATTTGACAAGGATGATGTATAA TAGACGCAACAAGTTCAATCCATTGTGGAACTCTCTTGTGCTTGGTGGTGTGAAAAACGGGCAGAAGTACCTTGGCACGG TTAACATGATTGGCATGAGTTTTGAAGACAACCATGTTGCAACCGGGCTTGGAAATCATCTTGCTAGGCCAATTCTCCGT GATGAATGGCATGAAAACTTGACCTTTGAAGAAGCTGTCAGGTTACTGGAAAAATGCATGCGCGTGCTTTTGTACCGCGA TAGGTCTGCTGTCAACAAAATTCAGATATCTAAAATTACTGAAGAAGGTTCTACTGTTTACGCACCGTTTTCGTTGAAAA CATACTGGGACTTCTCTGCCTTCAAGAATCCAACAGCAGGTGCTGAAGGTTCATGGTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0778500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDSIAETQRTLYPYVTGSSVVAIKYKDGILMAADMGGSYGSTLRYKSVERVKPIGKHSLLGASGEISDFQEILRYLDELI LNDNMWDDGNSLGPKEVHNYLTRMMYNRRNKFNPLWNSLVLGGVKNGQKYLGTVNMIGMSFEDNHVATGLGNHLARPILR DEWHENLTFEEAVRLLEKCMRVLLYRDRSAVNKIQISKITEEGSTVYAPFSLKTYWDFSAFKNPTAGAEGSW
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF001213
1 230 230 1.7E-94
IPR016295
PANTHER
PTHR11599
6 223 218 2.8E-107 –
PANTHER
PTHR11599:SF5
6 223 218 2.8E-107
IPR016295
Gene3D
G3DSA:3.60.20.10
10 226 217 1.9E-58
IPR029055
SUPERFAMILY
SSF56235
12 219 208 2.04E-55
IPR029055
Pfam
PF00227
16 198 183 1.1E-33
IPR001353
CDD
cd03760
16 209 194 5.48778E-113
IPR016295
ProSiteProfiles
PS51476
17 199 183 39.629
IPR023333
ProSitePatterns
PS00854
21 68 48 -
IPR016050

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004175
Molecular function Endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
Subterm of
GO:0004298
Molecular function Threonine-type endopeptidase activity Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
Subterm of
GO:0005839
Cellular component Proteasome core complex A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
Subterm of
Part of
GO:0051603
Biological process Proteolysis involved in cellular protein catabolic process The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0778500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…