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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0779800 |
| Transcript ID | LotjaGi1g1v0779800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA pseudouridine synthase d, putative; TAIR: AT3G04820.1 Pseudouridine synthase family protein; Swiss-Prot: sp|O74343|YH2X_SCHPO Putative pseudouridine synthase C1A4.09; TrEMBL-Plants: tr|A0A0B2RGJ2|A0A0B2RGJ2_GLYSO Multisubstrate pseudouridine synthase 7; Found in the gene: LotjaGi1g1v0779800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135163850..135172253) extracted from Lotus japonicus Gifu genome v1.2.
CATATAAATTAAATCCATAAATAGTTATCACAAATACAAATATACACCATGGGCGACAAATTTCCTTAATCAGATCTATG GGCTTGACGAGATTGGATCACATTAAAGTGGGGTTCCTATTGCATAACCCAAATTGGAAAAATAAAAATCTAGGGACAGG AACTCCAGTATATGGACCAAAAAAAAAAACATCATAGGTCGAAACGGTGCGTTTCAGGGGAAACCGCATAACTGTGCAGC AGCGTGTAGCAGTAGCAGTAGCAGTAGCATAGCATGGTGGTAACTTGTTCCATCACTGCTCTAAGCTAAAACCCTAATCG GTGATGGCCATGAAAACCCTTGAAGAACACGACGTAGGCATCTGCTCCTACATTTCCAACCTCCCTGGCTTCCGTGGAGT GTTGAAGCAAAGGTCTCTTTATTATTATCTCACACTGCAAAAAAAATTGAGCATCACCATTTTTATTGTTTAATAGCTTT GAATTTGATCCAGGTACTCTGATTTTATTGTGCATGAGGTAGACACTGATGGAAACGTTGTTGAGTTGTCATCACTTGAT GCCCCTGAAGAGGTGCTAGACATGATTTAGCTTCATTGATGAATTAATTGATTTTTGTTTGTAGTTTTTTGACATTTTTG TGCTCATTTCAGAGTGTTCAGGAAAATGGAACAAGTGCAACTGCAACTGATACTGCAGTGGTGAGTTATGCCTCTCAAAT TGAAGCTTTTAAGTCTCTTGCTGGGGATTCTGATGCAGCCCTTTTGGAGGAATTTATTAATCAAACTAAAGCTGCTGGAG GAGGAGAAGACAGTGTTTCTCCTGTTATTCTTTCTCCAGATTCGGATAAATCTCATCGAACGGTTAGTACGAGTTTTGTG GATTTCTTGTTCTATTACTTAGATTAGATTTGGGAATTGGGATGCATGTGTGAAAATATGCCTATATAGTTACTAGTTAG TACTTTGATATTGGATCAAAGACTAGGGATTAGGGCGTCTCGTTACAAATGGATTGAAATTTTCGAAAGAGATTATTTGT GTTTTGGATTGAGACACGGGGTCGAAAATTGAATCCTTTTGGTTTTAACTTCATTTGTTTTTTAAGTTTGGTGCCCTGTC CATCATAATTTGATTTTTACATTTAATTGAGTTCAGAAAGATGAGAATGGTTTGATCCTGTTATAGTGGCAACATGCAAG CATAGTGAATTCATTTTGTTGTTTCATTTTTTCCAATTTAGAACATCATAAATTTTACACTTCTTCAATCTATCAGGAAA TGCATAATTTCATAAAGGAAAACTTCAAGTTCCTGGTCTCTGACACGGTCGATGGACCGGATGCTTCATCAAAATGCATC CGTGTGAGATTGGATTCTGGTGGATCCAACAACAAAGGAAAAAACTCCAAGAAACGCAAAGGAAGAGATGATAAGCCTTT TGATAGCAGAGGTTCAGAAAATTGGCCACAAATTGGGGGCAAGTTCCTCAGGTAAAATTGATCAGGTGTTTTGTTTTATA GAGTATAAACTAAGCAGTCCTCAATGTCTTCCATGCAGTTTTCTTAATTATATTTCTACGTAGATTCTATTACGTACTTA GATATCCAGCCTTAATGTACCCTGCACACAATATGGACTTCATTTCATGCTGATTCTTGAACTTATTTAATATTTATTGC TGTCAGTTTTACCCACACAAGTGGTGTATTATAACAAGTAGTAAAGAGATGAGTAGAAGTATAATTTGCACAAGGAATTG TAACTAAATTCATTTAGTACTGAAATCGGAACTTCTTACTCTTATCCAAACAACCAGTGGCTGAGAGAATTGGACTTGAG GAAACTATTGACGCTGCTATTTTTTTTCTTTCTTTTTTCTGAGTTTCAGACACTACTTGAAAGTGATTGCCAGCAACTCT TGGTTGCATTGTATATTATGTCACGATATATTCTCGTTTTTAAATATTGTTCTAAGTTGCTCATTGTCATCTTTTAGGTT TAATCTTTATAAGGAGAATAAAGATACTCAGGAAGCTTTGGGGGTGGTTGGAACTATGCTTGGCATCCAGGTGTGTGTTG TTCATTGCTGGATATATTCAGTAAATTCTGATTGACAGAAGTGTCATCATCTAGGTTTTGTTTTCTTATAATTTTGTAAG GTTCATGGATGAAAAACTTTCCTCTTTCCTGTCCATTAATGGGCGTATGGGACATGTGTGATAATTGGTTTCTTTTTGCC ATATTTTTTAATTTATGAATTATCTGATTGTCATATTTGTGATTGTGTATAAATTTTTCATGCCTCTGTAATCTGTACAA CCCTTTGTTTCAACCTGGATATGGACGAACTTGGTATCCTTACTATTGTTAATTTTGTTATTGTTTATAGTTGTGTGAAT TTTTCTGCTCATAAAATTACGATTTGTTTATGATGTAAATTGTTAGCTTTCTGTAAGATGCATATTTTAATTGTTAAGTA TCTAAGATTATACATTTGGTGAATACTCACATCTTGCTCCCCATTTATGCCTTTGTATGATGACTGATAGGTAAGGGAGT TGAGTCTGTTTGTATTGTTCTTGCTTGCTCCTTGCTCCCTACCCACCCTCAAGAATAATATATTTGCATAAATTAGTAAG TGCCATCAGCTCAGACTAGCATTGGTTGCTAGACAAGCTTGTTGCTTTTTAAATTTTAACTGATTGATAATTAACTTACA GCAAAGGTCATTTGGGTTTGCGGGTACAAAGGACAAACGTGCTGTCTCGACCCAAAGGGTAATAAGTTTTCACATTCTTT CTGATTTTGCATTGGACGTTCATTCTTTTTTTCATCTTCCAGCATTAAATTAATGTTCATCAGACAGATGTTTCAGTTGG TTTAGTTCTTGTTTTGCTTCTAGGTTACTGTTTATAAGCAGCAAGCAAGTAGGCTAGCTTCCCTTAACAAGAGGTTGTTT GGTATTAAAGTTGGTGATTTCTGGTAAGGTTGTTGGATTTTGAGAGCTTGATGTTCCTAGTTAGCAGTTCTTTTATGGAT GATCAAATCATAAATGTTCTATTGGCCAGTTATGTTCAGGAAGGACTTTGTCTTGGCCAGCTCTCGGGAAACCGATTTAC GATCACATTACGGTGAGCGCATTATCCATGCACTAAATATCACTTTTCTTCTCTTAAACTGGCATCTCTTACTGTTATAA GTATTTTTAGCTATTGATGTATCATGTAACTGCAGCTTATTATTTGTAGCCATAACACTGACATATCATCTCAGAGGTAT TGTTGCAGATTCTGAAGATACCATAAAATCAGCTGCAGATGCCTTAGGAAGGCACGGCTTTATTAACTACTTTGGTTTAC AGGTACTTACTGAGAGCCAGCAAAAATCATCTCCATGCAAGTGTATTCCTTTTTGAGATTATATTCAAAAACCGGAGTTT CATGCTGTTGAACTCAAGTCTAAATTTCTGCATGGGAAGTGGGAACAGTTTTGTTTAAGTGTGGTTTGTTTTTCACAAAA AAACATAAAAAACTTAAACATGTTGGGAAAACCAAATTCATCTTCCCCATTTTTTTTTTCTTGTTGAAATTATTTTAAGA ACAAAAATTGCATTAAAATGTAAACTTTTTTTTTCTCTTTTTCTCTTCCTGGTATAGGCCAATGTTCAAGCATTACATCT TGCAACAACATAGTATTTTAGACCGAGTCTATTGTAGGACTTTTTGCCCCTTTATAAGAAACTTATTTGTACATATATGC TCACTGCCCAGCGTTTTGGGAGTGGTTCTGTGCCAACTCATCTTATTGGAGCTGCATTACTCCGAGGGGAATGGAAACTT ACTGTGGACTTGATCCTTGATCCAAGAGAAGGAGATATCCTTTCATTGTTTCTATATATATATATATACATATATTATGT CTTAGTTGATTTATTGTGCTAATAGGTAATATTAGTGTATTGATTGTCTTTGTTCTTCATAACATCGTCCTTTAAATACA AAGAGACGCCATAGCCAAGGCACGCAAGTACTATAAAGAGAGTAATGATGTTGTTGGGACACTTAGGCAAATGCCTCGAT ATTTAGTTGCTGAAAGGGCTGTGGTGAGTTTCAAATGAAAATTATTTCTGCATTGTGTTTCCTTAATGTTGATGTGAGAG TGACGTTAATATTTTGTTTACCATTCATCCATGTATGATGCATAACCAAGTTTTTATTGACAAATCCTCTCCAGCTGCAA AGTTTAAAAAAGTGTCCTGGAAACTACTTGCAGGCTCTGAAAGCTATTCCACGGACTTTGAGAATGATGTGAGTTATAAT TATCTGAAGAGGTTAATATGTTGTGTAGTAAATGTTTGGGTAAAGTGGGGTTATATTGTGACTGGTAGTAATTTTTCTTA GTTGGAGTAATTATGTATGTAAATTGTGATGCTGAAGTTCATTTCTGTCATCAGTTTCTAGCATCATCTGTTGTTGTATA ATGAATATCTTTTATTTGGATACTGAGTTATGTGCTTATATTTCAATTGTTTCTTACTTAAGGAATCACAAATGTTTTCT TTCGCATATTTAACTTGTCTTTTATATTGATATTTTTTTTTCTTTCCATTTCAAACTAAAGATATAACTGAATGCTGTGG CTGAGGAGGTGGGCCTACCCATGCCCCACTATACTGAGTTTGAATTTGACATAATTTTATTTGAAATCTTGGTACACATG AGTTCACAGTAAGTTCATTAAGCTTGCTTACATTAGGTTATTTTGCTTTATGAGAGAATGTTTTAGTGTTTTAATACAAA ACAATGAAGTCAACACACAAATGAATAAAATTTGAAAGCTAGGAAAACGAAAGAAATTCCTATGAAGTTTCTTAGTGGGC TATATAGGCTGTCTATCTGGTGATCTTTTACTGTGATGTGCAAAGACAAGTGTGCTATGAAAACAAAGAGATATTATTTG AGATTATTTATTTGAAGGATAATGTTGATCTTCTTCATTTTATAATTCCATTGCTTCTGTATATTTAGGTATGTACATAG TTACCAAAGCTATTTGTGGAACCATGCAGCAAGTACAAGGGTGCAAAAATATGGTAATGTGATCTTCAATAGTTTTCTAG ATCTTCTTGCTTTATGTGGCAATTAACTTCTAATGTTACACTTACATCTCCTTACACCCTTACTTCATTCAATACACTCT CCTTACCTTGATTATTGTTGTGGTAGTTGAAGCCAAAATATTCATTTATTAAGTTGAATTCGATTCTACCACGTGCAGGA ACTGAACAAGTAGTATTAGGAGACTTAGTATATTGCAAAGAAAATCCTTCTGGAAATGTTAGAGAGCTCATTGGACCTGA ATGTGAAGAGGACTGCAGCGGTACACATGATTCTAATAATGAAGATGAGGTCTCTCCAGATGTTCATGAAGGAATAAATA GTCATGTCAAGGTTAGTCTTGTCATTTTGGCCCATTACTGAGGAAAGCTAATATACTCAACCAATGTTGCTACTTTAGGA GTATGTCCTCTTCATATGATGTTTCTCAGAGAGAAGATGGTTTGGACATGTGTTGAGAAGATCTATGGTTTATAGAAGCA CCAATGAAGAGGGTAGACTAAATGGATATCCAATATTTGGAGGTAGAGGGTGATAGGGAAACTACAAGTCAAACCATTAA GAGAGATTTATATTTAAATGATTTATCATTGGACTTGATTCATGACAGGACATTAAGAGGATTTAGATTTAGATGGTTTA ATAACTATTACTTTTGTTGTTGTCGTTTTAACCTCATGGGTTTACCTCTCCATCTGCAGCCCTGTTCATCAAAAGTATCA GCATGCTCAGTGAGCAATTAATATGATAAATAATCTATTGTGCAATTTTATATCAAATTCACGAATAGAGAGCTATGTTG AACCATTTTTCTCAAATGAAGGGATGATTCCATTCAATTTTATATCAACTTCATATGACAGGTTGTGAATGCTGAAGATC TTGATTCGAGATGCTATACGATTGAAGACATTGTCCTTCCTATGCCAGGGTAAGCTTGACCAACATTACCATCTAATGTT GGTCAGATTCTATGATTCATACAACTCAGATCTTCTTAACCAATATTTTGCTCTCCATTTTTTTTTTTACTTTTTTTACA TTTTCCTATTTCATATGTTGCAGTTCACGGGTAGATTTTCCAAGCAACGACGTTGCCAAAGTTTATCATCATTTGGCAGA TAAAGTACGTACCAATTTGGTCTCTTGTTCTAATATCCTGGTTTTGTATGCATATGATTAGAAGTGATATCTGAAGGCCT AAGACTGAATGTCATGTCAGTTAACTTTTGAACTTCGATGCGGATGTTTAGTTTGTCTGCATTTGGGGTACTTGAGCAAT TAATTCTATCTCATGATGGGCAAAATTAAAAAATTGTCACTTCTTAGGTTCTCTTATTATGTCAAGCCTGAAATATTCCT TTTATCATGAAGAATGATCTTAAATTTGAGATAAGTTGTTTTTTTATAGCTTTAGGTGATTGCTAAAATCATGCCTTGGA AGCTATGGGCTATTTTTCTGATATGCTATAGCACACCAACTTGAAGATCCTCTGTATGTGTTAAAAATTAACATTCACTT GTTGACTATGACACTTAGAACTGGCAAGGAGACGTTATTACATAAGGACAGAGCGCGTTCATTGCTTCTCTTCCCCCCTT CTCTCCTCTTCCTCCTTCTGTTACTTCTGAAAGTATGGTCAGCTAGACCTACATAGTGTATATATCTGTCTGGGTTGCTG TTCTAACGTTTTTGCAACCTGCTTTAATGTTATTGTTCAATAGATAGTTTTCTTTTTCGCTACTTACTGTTATTCACCTG TTTGTTTATACTTGTCAGGACGGAATCAATTTAACAGAGAGCGTGCATAATGTGAAGTATGTAATAAGAATCTCAACTCA AATCTCAATGAGTCTGCGTCTACGTTCATTGTCTATCTTACCTTTTTTTTTTTTGTCTCTCCTGCCTGTTTTCTTACTGT TGTTCATTCATACTTGTTACTAGGGAATTCTCAATAACTAGTGTGACTGGAAGTTACAGGAGGGTTTTTCAGAAACCGAT AAATTTTGAATGGTACGTACCTAAGTTAACCCTCCACTTGATTGCATAGACTCTTATTTTCACCGACTTTGCTTTTACAT GGAGTTCTCTCTAATTGAATAATGTCTTTGATTGTCTTCAATTGCAGGGAATTACTTACATATAGTGATAGTAATAAACC ATTGGCAGAGACAGATTTAGAAAAAATCAGCAAGTCTAAACCTATAAACGATGCCGAACAAGAGGGTGCAAATGGGAAAA AGGAAGAAAACTTTGTTAGCACGACACAGTTAGAGAGCTCTGATGATGGTGCAAAGGTTGAAAATGATTATAATGAGATT GTAGGTGAGGAGGTGATATTACCTCCTGATGAATCTGCTGGTGACTTGAGGTCTCAAAACTCCCAAATAGCTCTCAAATT GAGCTTTACTCTTCCTTCTTCCTGTTATGCAACAATGGCGATAAGAGAGCTGCTGAAGACTTCAACATCTGTAAGATTTG AAAAGCCTTGTATCTGTTTGCTTCATTCGTTTATTGGTAAAAACATATAAAAGGGGAACATTTAATGTCTTAACCTGGCC TGCATATAAATCTGTTTTTAATGCTGTTGCAGGTTGCATATCACAAGACATTAAACTAGTAGCAAGCACATAGCTACCAA ATCAGCAATGTTTTTCTGCAGGAGAAAGTGATTCATAGACAGAACAGGGAGAACACAGAAAGATAAGTTCTAACTAGGCG TTACTAATTATCGGTGGATGTTATAATATATGTGTCCTGTTGGAAGAAATAGAGCGGTATCCTCTCAATTATTCTTTGTA TCATGTTTGAGAACCGTGGAATTCAATGCTACTTTTATTTCTGCTGAAAATTTGAGTTGAATTTTTGCAAGTGCTATTAA TGTTCAATTTTGTATAAGAAGATTTCCATGTGTTCGATTTTGTTAGAGAGCTTGTCATGTTAAACTGTTTTATCTTTCTC ATCATATATATATATATATATATATATATAAATACCAATCTAGTTTCATCTATTTCATACATATAAATGAAATGAAACGG ATGGATTAGGATCCTATCATCAGCAAACTTTGTATGGCATTGTCATGTTTAAATTGTGTTTTGGCGCGTTTGGATACCAC CTTATTAGAGTTTATTGGAGCTTATCTATATAAAAAAGCATTAAATAAGCTCCAATAAGTGTTTTTTTGTTTGCATCTAA CTCTTTTCATAGATATTGAATAAGTGAGTCCTTCTGGCGTTTATGAAGAAATAGATAAACACAATATTTCACTTGACATT GTGT
CDS sequence (LotjaGi1g1v0779800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGAAAACCCTTGAAGAACACGACGTAGGCATCTGCTCCTACATTTCCAACCTCCCTGGCTTCCGTGGAGTGTT GAAGCAAAGGTACTCTGATTTTATTGTGCATGAGGTAGACACTGATGGAAACGTTGTTGAGTTGTCATCACTTGATGCCC CTGAAGAGAGTGTTCAGGAAAATGGAACAAGTGCAACTGCAACTGATACTGCAGTGGTGAGTTATGCCTCTCAAATTGAA GCTTTTAAGTCTCTTGCTGGGGATTCTGATGCAGCCCTTTTGGAGGAATTTATTAATCAAACTAAAGCTGCTGGAGGAGG AGAAGACAGTGTTTCTCCTGTTATTCTTTCTCCAGATTCGGATAAATCTCATCGAACGGAAATGCATAATTTCATAAAGG AAAACTTCAAGTTCCTGGTCTCTGACACGGTCGATGGACCGGATGCTTCATCAAAATGCATCCGTGTGAGATTGGATTCT GGTGGATCCAACAACAAAGGAAAAAACTCCAAGAAACGCAAAGGAAGAGATGATAAGCCTTTTGATAGCAGAGGTTCAGA AAATTGGCCACAAATTGGGGGCAAGTTCCTCAGGTTTAATCTTTATAAGGAGAATAAAGATACTCAGGAAGCTTTGGGGG TGGTTGGAACTATGCTTGGCATCCAGCAAAGGTCATTTGGGTTTGCGGGTACAAAGGACAAACGTGCTGTCTCGACCCAA AGGGTTACTGTTTATAAGCAGCAAGCAAGTAGGCTAGCTTCCCTTAACAAGAGGTTGTTTGGTATTAAAGTTGGTGATTT CTGTTATGTTCAGGAAGGACTTTGTCTTGGCCAGCTCTCGGGAAACCGATTTACGATCACATTACGAGGTATTGTTGCAG ATTCTGAAGATACCATAAAATCAGCTGCAGATGCCTTAGGAAGGCACGGCTTTATTAACTACTTTGGTTTACAGCGTTTT GGGAGTGGTTCTGTGCCAACTCATCTTATTGGAGCTGCATTACTCCGAGGGGAATGGAAACTTACTGTGGACTTGATCCT TGATCCAAGAGAAGGAGATATCCTTTCATTGTTTCTATATATATATATATACATATATTATGTCTTAGTTGATTTATTGT GCTAA
Protein sequence (LotjaGi1g1v0779800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMKTLEEHDVGICSYISNLPGFRGVLKQRYSDFIVHEVDTDGNVVELSSLDAPEESVQENGTSATATDTAVVSYASQIE AFKSLAGDSDAALLEEFINQTKAAGGGEDSVSPVILSPDSDKSHRTEMHNFIKENFKFLVSDTVDGPDASSKCIRVRLDS GGSNNKGKNSKKRKGRDDKPFDSRGSENWPQIGGKFLRFNLYKENKDTQEALGVVGTMLGIQQRSFGFAGTKDKRAVSTQ RVTVYKQQASRLASLNKRLFGIKVGDFCYVQEGLCLGQLSGNRFTITLRGIVADSEDTIKSAADALGRHGFINYFGLQRF GSGSVPTHLIGAALLRGEWKLTVDLILDPREGDILSLFLYIYIYIYYVLVDLLC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 353 | 353 | - | – | |
| PANTHER | 5 | 351 | 347 | 5.4E-144 | ||
| PANTHER | 5 | 351 | 347 | 5.4E-144 | – | |
| SUPERFAMILY | 9 | 341 | 333 | 3.02E-56 | ||
| MobiDBLite | 104 | 123 | 20 | - | – | |
| MobiDBLite | 155 | 189 | 35 | - | – | |
| Gene3D | 173 | 341 | 169 | 2.8E-45 | ||
| Pfam | 193 | 346 | 154 | 1.2E-36 | ||
| CDD | 196 | 354 | 159 | 8.41197E-84 | – | |
| ProSitePatterns | 230 | 243 | 14 | - | ||
| ProSiteProfiles | 310 | 374 | 65 | 16.676 | ||
| Phobius | 354 | 373 | 20 | - | – | |
| TMHMM | 354 | 373 | 20 | - | – | |
| Phobius | 374 | 374 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | Pseudouridine synthase activity | Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. |
Expression pattern of LotjaGi1g1v0779800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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