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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0781600 |
| Transcript ID | LotjaGi1g1v0781600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sec-independent protein translocase protein TatA; TAIR: AT5G28750.1 Bacterial sec-independent translocation protein mttA/Hcf106; Swiss-Prot: sp|Q9XH46|TATA_PEA Sec-independent protein translocase protein TATA, chloroplastic; TrEMBL-Plants: tr|I3T5R6|I3T5R6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0781600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135462555..135467693) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAGGAAAAATAACAGAGATTTATATATACTATATAGTTTTTTTTTGTGTATAGGAAAATAATATATACTATATAGTT TTCTTGAAAAAATATCCTAGCCACAAGCATAGGCAAGAGAACCAAACGAGATGGAGATGATGATGATGAGCTGTGTTTCG TTTCCCTCATCTTCTTCTTCTTCAATCCCAATCACAAGACCTTCCTCTGTTAACAACCTCGCTTTCTCTTCTTCATTTCG TTCCATTGCAAGCGTAGCACCACCCATCACCACCACTCCACGACGGAGAAACAAAGGTACTGCTCTCACTTGCAACGCCT TGTTTGGCCTCGGCGTTCCCGAACTCGTCGTCATCGCCGGCGTCGCCGCCATCGTTTTTGGACCCAAGAAGTTGCCTGAA GTCGGTCGCAGCATCGGCAAAACTCTCAAGAGCTTCCAACAGGTTCCTCTTCCTTCCCTCTCTTCGTTCATTGAAATTGG ATTTACAGTTTTACAAATTTGAAATTGAAGTCATTTTGCTTCTTGAGAAATTTATACTTGTAATTCTGCATAAAGGGTCA TTGAAAAGTTGCTAAAGGTGTTTTTTTCCTTGCATTTTTTGGTGAATTGCATTGAATATGCATAGGGTTTTCTTTGTTGT TGCTATCCCATGCAATATCTGAAAGTTTAATTTAAACGAATGAAAGTCTGTACTGAATGTTCATACTAAACTTGTTAGTA CAGTGACTGCCCAATGTGATCCTTGTTTTGTGCCTTACTGCTTTAACCAGCTTCCAATTTAGTGGCTCAAACTGATTCCC TGTTTTGCATGAACTTTTCATCAAGGAATTCTAGAAGAAGACTGACATCTTAGGCCCCTACTGGCTTAGTAGCTCAAATT TATCTAAAAAACTGAAACTCTGTATTGGAGTCACTTTGTAGGCTATGTTTTACAGAAAAAAGATGTAGCACTTAGCAGTT CAAAGTAGTTGTTCTATGTCTTGAATTTGGGATAGAGTGTGAAGATTGTAGGAATTTTTTGGTAGTTGCACTGGGAAAGT TGTGTGGTTAGGTTATTCTTTGGACAGCTGTGAGTAGTCCTCCTATATGAGATTTTGGACAGGCTCTTATACCATCTTGA ATTTGAGCTGAGTCTAACTCTGCCAAAAGCTAACTTATAATGTGAGGATTGTCCAACAGTGCTATTTTGGCTATATCTCT AGTCGATTATCAAATACTATGTTTGATTTTCAAGATGACGGTCATATGACTCTTGAGATAGAACCAAACAAAAGATGTAT AGGACAGAACTCTTAAATTTTTTTATTCAATAAACTGATGGTTAACTTTTTGTTCACCAAATAACCACATACAATATCAT CCAAAAGTTATTAAAAATAATTTTTTTTTCCTTTTCATGATAGCTCTTTTTCTCGAGACCTTTCTGTCCCTCAATCCTTG CCCTTCATCCTTTCTTCTCCTTGTACCTTTCTCGAGACCTTTCCTAATATTTGTACTGTCGATGGGCCATCAAACAATAG ACAAAACAAAAGGGTGTGCTCTGACTTAGATACTTGTGTTGTTCTATTCTGCTTCTAGTGTACCTTAATGTGCATCAAAT ATGCTTTATATACCTCTCATAGGACTTTTATGCGCATATGATTTAACTGTTAATGCTCCAGCAAGTCTCATGGGTTGATG AAGGCCTGTTTATAAATGATCAATCAAAAATAGGAGGTGAAAAAAATGGAACAATTCATTCAAGAAACTAAACAGGTTTT AAACTGTGGAAAGTGTATTCCTCAGCTTTTATGTTAACATGTAATCATCCCCTAATATCCATGATTAGCATCCGCTAATG GGTTTGGATAAATTCCCTACTAAGTAAGAACTCTTCATGCACTCAAGCTGGCAAAATTTTGGATTCTAGCATTGAGTTTA ATGTGAATCAATGAATGTGATGTTGTCATCTACTAACTGTTCAATATTTTCTTGATGGCTTATATTCTTATTTAGCATTT ACTATATTATGCAAATCTTATAGGCAGCAAAGGAATTTGAGACCGAGCTTAAAAAGGAACCTGATTCCATTGGAGGGCAA TCTGAGGAACCTCTTGCTGTGAGCGAACAGGAGAAGCAAGAAACTGAGGTGTCTAGTTCTAAGGAGAGCGTATGAGATTT GTAGAACTTATGTTATGAGTAGGTATCAAATTTTCACCCTGACATTATGCATTTAAAGGAAACCACTTTTCCATAAGTAA GATATGTTAATTTAGTATTTCTGTCTCTCATCCGTTAAATTGACCAAACTTTAAGATAAAAGATTGATATATCGGCTGGT AGACATGGATGTTGCCCATACAAGAAAATAATGGAGTGAACGATACTATTATTCGGGTTTCATCTTCACTATGGCTACCG GGTGATCTATTCCTTGAATTATTGTAGATTCATTAGCAAATATGAGGACATAGCCTTGTTGATAGCAGTATTAAACTCGT CTTTGACTGCTCGTGGATAGAAAAGAGATGTATAGAAAATAAAATGAGGAAGGAAGTTATCACTTTCTAATTTAGTCCTT TAAGAAAACTAGTGGGAGAGGGGATTTCTAACTTCCACTTGTTTTCTAAGAACAAATAAAGAAGAGTCCTTCTTTAACCA GGTGAAGGTCTTCTATTCGACATAAGAAACCTGCATCTTCCTCCACACAAACCCTAACGTGCTTTTTTGGAGTTAATAAT ATTACCTGATGTGATGACTATACTTTCTTACATTTGCTCCCCTCTTATCTTTTTGTGTATCTTTCCCTCCCCAACAAGTG CATGGTTGTTAAATGTACATAGGCCCTCACAATATCCAAGTAACTGATATCATTCCTGGTGTTTTACTTCATGAAGTAAG CCACAAACAGCCTTTTGTTTACTTTTACGCAAACAATTAGACATTTTGCGAAACAAGTTGACATGCAAAACGTGACAAGA TAATAGAAAGCTTGTAAGTAAGTAAATTTCCTGTTCTAGTATTAATTTCCATAATAGTATTAAGCCTTTAGTAAGTTTGA TCCCCTGCTGATACTGTACTCATGACAGTATAGAAGTTCTGGTACTAGAGAGACTCAGCTGAATCATGTTCGGCCTAGCA TCCAAATGTAATCAAACCCAGCTCGGCCTAGAATATTTTCTATCCATAATATTTGGTCCAAATGACATAAATATAAGTCA TGAAAAATTAGCTTAAATATATTAAAACATTGTTCACCATAGCTGTTTCAATAGTCAGAACCAATGGATAAAAAAGAATT GTTAGAACAATGACAAAACAGAGAACCTGATAGATGAACTAAGGTACATTACGTCAAAGCAAAGGCAGTTATGTTAAATA AAAAGAGTTAAGACTAACAAGGATACACATCCAAACAGCTAATTTAAAAATCTATTCATATTTAAGTGTGTTACATTTCC AAATATCCAAAATTTACCTTGATCAGCAACTTTCCAAACAATTACATGAGAAGGAGTAAGTAAACAACGATATAACTCAA AGTTTTATAACTAGAGACAAAGTTCATGTACTTCAAAAGCACCAAAACCAGCCGTACGTAGAACTAATTACAATGTAGTC ATCTAAGACTAGGAATAATAACAGCCATATCTATTACTGAAGTAAAAGTTCGCAGGTCCTTGGGCATGAGGTTAATTCCT TTTTATGAGCTAATTCCTTTTTAAGATCTAATTCCTTTTTATGATGATCATTCTCGTGAAGATAACTGCTGCAAATTATT GTCATGGTACGTAAGGATGTTGAGTTTTGCATAACATACTTGGCAAATGTCATCTGATTTGCTCTGCTTGAATAAATTTT AAAATCGCACTTTGTGAGCTGTGAAGAAAAGCATTCAGGAACAAATTGAGGGTTTAGCCAATCCTGACAAAATGAATATG GCAAATCAAGGGAAAATGTTTGAAGGTTAGGGCTATAATTGAGTATATCCAGCACTGAATTCCATTTAAGTTGAACATGA CCTCCAGCAGAGATGAGCTCCAGATGAATTAAATTGGGAAACATAGGAATGTCTTTATGCCACTGCAAGAGTTGTAAAGA GAAATTATCACAAGTATTAGTAACATTTTCCGGGGTCTACACAAATAAAAAATGAAATAACAGACTAAACATTGTTCTCC TTTACATATACAAACCTGGTCCAAGCTCAGAAACTTCACATTAGAAAAAACTTTCAGGGGAATATGAAGTCCACAAACCT TTGCTCTGACCAACTTAGGCAAACTTTTGAATTTCCCCTGAATTGAGAAGCTATCGAAGTGTACATAATTTGCTTCCAGA ATTTCAAGAATTGGACATCCATGAAGAAACTCCATAAAATGTTGAGGCTTTGAAAAGACAACATTTGTCAAATGCAGGGT TTTAAGGGATGGAAGGTTAACAGAAGAAAGGCCATTTTTATTTTTAAAAGATGCCCATGTCAACTTGAGAGCAACAAGTG TTGTGCAGCTGAAGATGTTGGTCGGCAAATCGAATGAAGGGTAACACTTGACTTCAACGTTCTCGACTCCACATTGTATT GCTTTGCTCAACGGTCTCAACCATCGCTTCTCACGGTGTTCATACCTATTATACACCGTTGTGAGGAGGCGAAACTTTTT AATCAGTTGGTGCGAACCTCGTGCATGAATGGTTGTCCATACAAAATCGGCAAAGCAGCACCACCTCTGATGTTTCTCAC GTTGTTGTTCATATCTTCCCCTGTCGAAATCAAGGGTGGGGACTGAAAGCCAAAGCGGCCTCCACCTCTTTGAAAGAAGA CTTGTGGCAATGACATCTTCAGTAGGAAGAAACGAGAGAATGAGAATCAGAACGTCCTCCGGCAAATCGCTAATCCTATC GGCCATTGGTTCCATTGGTGGTGTGGTGTTTTTGTTTAATATGAATGTTGAAGAAAATTTGTTATTTGAAGACATAATTT TATCGACTATTATACACTCTTTGATAGGCCTATTATCAAAACATTCAAATATCTAAGTGATTGAATCTAATTAATTTAGA TATAATTAAATTTAGTTTATTTAGATAATTTATTCCGTTTTTATTTACTTGATTGTAGTTTGTTATTTTACTTGATTTAG CTGCTTTATTTCTATGCAC
CDS sequence (LotjaGi1g1v0781600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATGATGATGATGAGCTGTGTTTCGTTTCCCTCATCTTCTTCTTCTTCAATCCCAATCACAAGACCTTCCTCTGT TAACAACCTCGCTTTCTCTTCTTCATTTCGTTCCATTGCAAGCGTAGCACCACCCATCACCACCACTCCACGACGGAGAA ACAAAGGTACTGCTCTCACTTGCAACGCCTTGTTTGGCCTCGGCGTTCCCGAACTCGTCGTCATCGCCGGCGTCGCCGCC ATCGTTTTTGGACCCAAGAAGTTGCCTGAAGTCGGTCGCAGCATCGGCAAAACTCTCAAGAGCTTCCAACAGGCAGCAAA GGAATTTGAGACCGAGCTTAAAAAGGAACCTGATTCCATTGGAGGGCAATCTGAGGAACCTCTTGCTGTGAGCGAACAGG AGAAGCAAGAAACTGAGGTGTCTAGTTCTAAGGAGAGCGTATGA
Protein sequence (LotjaGi1g1v0781600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMMMMSCVSFPSSSSSSIPITRPSSVNNLAFSSSFRSIASVAPPITTTPRRRNKGTALTCNALFGLGVPELVVIAGVAA IVFGPKKLPEVGRSIGKTLKSFQQAAKEFETELKKEPDSIGGQSEEPLAVSEQEKQETEVSSSKESV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 14 | 8 | - | – | |
| PANTHER | 9 | 129 | 121 | 8.8E-36 | – | |
| Phobius | 15 | 18 | 4 | - | – | |
| Phobius | 19 | 62 | 44 | - | – | |
| TMHMM | 61 | 83 | 23 | - | – | |
| Phobius | 63 | 83 | 21 | - | – | |
| Hamap | 64 | 137 | 74 | 18.029 | ||
| PRINTS | 64 | 84 | 21 | 1.0E-5 | – | |
| TIGRFAM | 66 | 112 | 47 | 6.5E-20 | ||
| Pfam | 67 | 116 | 50 | 9.3E-21 | ||
| PRINTS | 84 | 103 | 20 | 1.0E-5 | – | |
| Phobius | 84 | 147 | 64 | - | – | |
| MobiDBLite | 110 | 147 | 38 | - | – | |
| MobiDBLite | 130 | 147 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Protein transport by the Tat complex | The process in which folded proteins are transported across cytoplasmic membranes of bacteria and membranes of organelles derived from bacteria (chloroplasts and mitochondria) by the TAT complex. |
Expression pattern of LotjaGi1g1v0781600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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