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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0782200 |
| Transcript ID | LotjaGi1g1v0782200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pathogenesis-related protein PR-4; TAIR: AT3G04720.1 pathogenesis-related 4; Swiss-Prot: sp|P32045|PRP2_SOLLC Pathogenesis-related protein P2; TrEMBL-Plants: tr|C6T2R0|C6T2R0_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0782200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135526494..135527914) extracted from Lotus japonicus Gifu genome v1.2.
GAGAAATCAATGCAAACAACAAAGAGTAAGACAATGGCAAAGATTTCTCTGTTTTTGGTGTCTTTAGTTTGTGCTCTGGC TTTGGCCTCAGCTCAGAGTGCCACCAATGTGAGAGCTACTTATCACTTGTACCAACCTGAGCAGCATAATTGGGACTTGA ATGCAGTGAGTGCATATTGTTCAACTTGGGATGCAAACAAGCCCTTATCATGGCGCAGCAAATATGGTTGGACAGCTTTT TGTGGACCTTCTGGCCCTACGGGCCAAGCATCTTGTGGCAAGTGCTTGAGGGTACATATTCTTTTTTTAATTATATTTAG CACAAGTTTAGCTTGTAATAAATTCTTTTGAACACACTCCTTCACACAATCTCTACAATTGTTTTATGTTTTTATAAGAA ATTCAACATTATTTTGACTTATGAATTGGGGCAAGTCCACCCATCATTTAAAAAAAATCAACATGTTTTACAACTCAGCT TATTTTTATTTACTTATAAAGATCAACATGTTTTTATGTGCAACAAAAAAAAAACTCTATTAAGAATTAACTTTCTATAT CCATACAAAACCTATAATTAATCGACATTTTTTTATTTAAATTAATCGACAATTCTATAATTAACCAAAGAATTAACTTT CTATATCCATACAAAACTCTATTAAAAAATGTGTTGTTAGCTACCATTTCTGAATGTATAGATTCTATTTTACTTCTTTT ATATTTATATTGTATTTAATTTTTGGTTCATTTTGCTTGAATAAGTGAAGCAAGCACCATGGTTACTTACTGATGGGGGT GTTAATTTCAGGTTACAAACACTAGAACAAACACTCAGGAAACTGTGAGAATTGTTGACCAATGCAGCAATGGAGGGCTC GACTTGGATATTGGTGTCTTCCAAAAACTGGACACAGATGGGAATGGTTATGCTCAAGGCCATCTTATTGTCAATTATGA TTTTGTGGACTGTCGTGACTAGATTTTGCATTCAAAAGACTAGCCAGCAATATTACTTGTTATTGCTCTGGTTATAAATT ATAATAAGCTTTTGTGCATCAATAAACCAAAGGAATAAAGGATCATATGTATGTCGCCAGCACCACCCAGGTGGTTTATA TGGTTATTAACAATACTAGTGAAATAAATGAAATGGTCTGAATTCTCATTTCAAAATCCATTCCCTTACCATTGAGCTCA GTAGATCAGCTGACAGAGGTTGATTTAACTTAATCAGAAATCTTGATTTCGAACTTTAGTATTAACATTGTTAAATACCG GGAGAGTTATTTGCCACTTATAATTATGGTGATTATATACAAAAATTGAGCAAAATTGGGCACTATATGTGTAAACTAGA AAGAAAAAAAGTAGATGCATGTACTGAAAGAATGGACAATCTTGCTTTAGATCGTGAAGAG
CDS sequence (LotjaGi1g1v0782200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAACAACAAAGAGTAAGACAATGGCAAAGATTTCTCTGTTTTTGGTGTCTTTAGTTTGTGCTCTGGCTTTGGCCTC AGCTCAGAGTGCCACCAATGTGAGAGCTACTTATCACTTGTACCAACCTGAGCAGCATAATTGGGACTTGAATGCAGTGA GTGCATATTGTTCAACTTGGGATGCAAACAAGCCCTTATCATGGCGCAGCAAATATGGTTGGACAGCTTTTTGTGGACCT TCTGGCCCTACGGGCCAAGCATCTTGTGGCAAGTGCTTGAGGGTTACAAACACTAGAACAAACACTCAGGAAACTGTGAG AATTGTTGACCAATGCAGCAATGGAGGGCTCGACTTGGATATTGGTGTCTTCCAAAAACTGGACACAGATGGGAATGGTT ATGCTCAAGGCCATCTTATTGTCAATTATGATTTTGTGGACTGTCGTGACTAG
Protein sequence (LotjaGi1g1v0782200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQTTKSKTMAKISLFLVSLVCALALASAQSATNVRATYHLYQPEQHNWDLNAVSAYCSTWDANKPLSWRSKYGWTAFCGP SGPTGQASCGKCLRVTNTRTNTQETVRIVDQCSNGGLDLDIGVFQKLDTDGNGYAQGHLIVNYDFVDCRD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 36 | 36 | - | – | |
| Phobius | 1 | 30 | 30 | - | – | |
| PANTHER | 10 | 150 | 141 | 5.6E-79 | – | |
| PANTHER | 10 | 150 | 141 | 5.6E-79 | – | |
| TMHMM | 12 | 31 | 20 | - | – | |
| Phobius | 14 | 25 | 12 | - | – | |
| Phobius | 26 | 30 | 5 | - | – | |
| SUPERFAMILY | 29 | 149 | 121 | 4.19E-44 | ||
| Gene3D | 29 | 150 | 122 | 7.7E-56 | ||
| ProSiteProfiles | 29 | 150 | 122 | 86.59 | ||
| Pfam | 30 | 148 | 119 | 2.6E-64 | ||
| Phobius | 31 | 150 | 120 | - | – | |
| PRINTS | 64 | 82 | 19 | 2.9E-45 | ||
| PRINTS | 83 | 101 | 19 | 2.9E-45 | ||
| ProSitePatterns | 89 | 97 | 9 | - | ||
| PRINTS | 102 | 120 | 19 | 2.9E-45 | ||
| PRINTS | 123 | 147 | 25 | 2.9E-45 | ||
| ProSitePatterns | 141 | 148 | 8 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Defense response to bacterium | Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. | ||
| Biological process | Defense response to fungus | Reactions triggered in response to the presence of a fungus that act to protect the cell or organism. |
Expression pattern of LotjaGi1g1v0782200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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