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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0783300 |
| Transcript ID | LotjaGi1g1v0783300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRF1-interacting factor-like protein; TAIR: AT5G28640.1 SSXT family protein; Swiss-Prot: sp|Q8L8A5|GIF1_ARATH GRF1-interacting factor 1; TrEMBL-Plants: tr|I3S8D8|I3S8D8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0783300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135643158..135647431) extracted from Lotus japonicus Gifu genome v1.2.
TGAATACTAATATTTGAAAATGAGACGAAAAAAAAAGTAATGTGAATGAATCATTACTCATTTAACACAGTTGTTATACT CAAATCCAATATTTTTTATATAACAATCTCATACCAATTGACTTATGACCAATTTTCATGTGTGTATATGCATACAGTTT AAGAATTCCCAATAATTGTCACAATTCTCACTTTGATGTTAAATGAGAGTATGTTTAGCAGAAATCCATGTCAAGTTGAA GCATTAAATAACTGCTTTGAATCCACTCTAATGTATCAACTATCAAGAACTGAAATCCAATATGTTCTATACATGAAAGA AGAAGATATGATACATAATCTTCAATTCCCAAAATAATAAGCATTCTGAAAAATAAATAAAAAGTTAAAACAATAATTAT TTTGAAATGCATAGAATATGATATTCTTGGCTGGTCAAAATTAGATTATGTCATCTATCACGTGACCTATTTGTAGAGAG AGAGAAAGGGACACGCAGTTCAAGAGAGACATAGCCATTGTGATTGCAGAGAGAGAGAGAGAGAGAGTCAAAACAAACAA AATAGTAATACTCCAAACCAAGGCCCCAACCCCAATGCTTTCTCTTCTCTCTCTCAATCTCAATCCATGCTTTTAAATTT CTAATATAATCATCATCTTGCATAGCATCATTTGCAATACAAGAGAAGAGAAACGTGTAGAAAGCCAGACTCATTCTCTA GAGAGAGAGAGAGACTAGTTGTTGTTGTAATATTATTGTTAGTGTGTGCTTGTGTTGTTTCTCTTTAATTTGCACTTACT ACACTCACTCAGAATCAGACCTGTGTTTCTGCTCTGCTCTTCTGCTATTTGTTTGCTCTGGAATATTGTTTGTTGATACT TGTTAGAGAGAGAGAAAGTGAAGAGAGAGTTAAATAGATAGGTGTAGAGAAAAATGCAGCAGCACCTGATGCAGATGCAG CCCATGATGGCTGCCTACTACCCCAACAACGTCACCACTGATCACATTCAGCAGGTTCTGTTCATCTTCTTCTCCAACTT ACTTTCTTTTTCTTTTTGTTTCTGTTGATTCTGCTTCATTCCTTTGGATATATATTGTATATGCTTACTTGTATGGATTG TATTGTATTTGTATAAGTTCTGTTCTGGTTCTGGCTTCCCCGAGTCATCAGGGCCCTTTTGTCTTGTGGGTCTGCTCTTC TATTTTCTATATATGCCACTTTTAGTACCACTTTCTTCTGTTGCTACCTCCTTTTTTTTCTGTCTCTGTTCATACCTGCT CTACTTGCTTACTCCTCTTCTCTTTTTCCTGCTTCCAGTCCTTGTCAGCTTCCTGCTACCAATTACACTAACTCACTCTA GCTTGTGTTATTCTTAGTACTAATCCTCACCCATTCATTGGTTGGGGTTTTGCTTCTTTTTATTTCAACTTATATTATAA ACATGTTGATGCCAAGTGCCAATCCTTGTCTTTATTAAGCCTAGATTTGGGGCTCTTTTGACAAGTTTATTTATTTATCA TTTGCTTCAATTGTTCTTAACACATTTTTTTAATCTAATCACACTGCAGTCAGATACTGTTTTAGCTAGCATCACTTCAC TTGTTCTTTCTATAATTGATTCTGATCTTAAAATCTATTGTATAATGATTTTGAAACATGCACTTACACCATGTTTGGTT TCCACCTTGAGATGCAGCTTTTGCCCAAACAAGATATTAGACTACATAATACTTGTTCTTCATTGCATTTGCATCCCACT TTGTGATTTGGTAATATAGTGTATAGTCCTAGAATGTGTTTAACATGAAATTTTATGTTTCACTCTAAGTAGCTGAAGTG TTTAACTTCCAATATCAGTTTAGTAAATGTTGATACCATACCTGATCTTCTGTGTTCAACCGAGACTGCTTATACTTCCT TGTTTGCCATATAGTCATAATAAAGCTTACTACTTTTAATGTTGGGATTTTTATTAGGTAACAACTCTTTGTTGCTTGAT ATGGAACGTTTATTAAATTAGGAAACACGGTATTTTGAATATTTAAGAATAACTGTATTAGATTAAGATGGAAGTATTGG AAGATATGGAATGGCCTTGTATCAGAAGGCTTAGTATTTACTGCATCTAGTCAACTTGATTAAGCCCTCTTCATATTTTC TGAAACCTTCTGATATTTAACTGCATCATATATGGAGCATAACTGTAGAACATATTTAACTACTGATATTTCTTGCTCCC CTTCCCATTTGCTAGTATTTTTCCTGCATTTGAATGATACTATCTTATCCTTCTTTTAACCTTTTACCCCTTCTTTTTAC AAGCAGTATCTGGATGAGAACAAATCCTTAATTCTGAAGATTGTCGAAAGCCAGAATTCTGGCAAGCTGACCGAGTGTGC CGAGTAAGATTTGGGCTAATTTTGCTGTCATTTGAATTGAATTTAATGTTTTTTCATTTCTTAATTTAATCATGGAAAAG ACCTTGGTTTAAATGGTTTTATTGGAAACGTCAACTGATCTTTGTAAATGATCAGAGAGTGAGATAAATTGAAACTTGAA TATAGTAGAGTAGGACTAAATTAACTAATTTATGATATAACTTTTGTGCTGCAAATAAAACTTCATAAAGAAAGGATTAG ATTTCTCCCAAACATCTTGACTTCATATGGGTCTAATCCATATACTTGTCCCTACTGTTGGGTTCCTAAGTAAAAAGGTC TTATGTAATTCTTGTGCCGTTATTATTTCAGGAACCAAGCAAGGCTACAGAGAAATCTCATGTACCTTGCTGCAATAGCT GATTCTCAACCCCAACCACCTAACATGCCTGGCCAGGTACATACCTTATTCTCTGAATGTTGATTCACTTATTTTAGCAA ACATGTTGATCTCTCTTAAGTGTGGCAATGATCCTTATCAATCTTTAACCATTCTAGACGATTACTTAGTGTGTGTTTGG GTCAATGTTATGAGAGTTATTTTGGTAAAATTGATTGTGTTAAAAGTGAGTTGAAAATGAAGTATTTATGTTTGGACACA TTTATGAGAAAGGTGATTTCTATAGGGTAATGTTGTGAAATCCAGTTATGAAATACCCAATTATGTCATCCGGAGAGGTT ACTCTGTCTAGCTCCTTGCAGAATTGATTTTGGGACTAAATCAATTCTCTTTGTCAATTGCCAAACATCTATATAACCAC CTAAAAGTGATTCGGTTATATGAGAAATGGTTCTAAAGCTCCCAAATGTAGAATCAAACACACTATGCTTATTTCACATC AGAGAGAGACTAATTTATTTGATCTGCTTTAACATATGTAATGCAAAATTTGATACTGCAGTACCCTTCTGGTGGCATGA TGCAGCAGGGAGCACACTACATGCAGGCTCAGCAGGCACAGCAGATGACACAACAACAGCTAATGGCTGCAAGGTCCTCC CTTTTGTATTCACAGCAACCATACTCATCACTTCAACAGCAGCAACAAGCTTTGCAAACCCAACTTGGTGTGAGTTCAGG TGGAAGTCAAGGACTTCACATGCTGCAAAGTGAAGCCAGTAATGTCAATGTAGGAGGCAGTGCCTCCATGGGTTCTGGAG GGTTCCCTGACTTCATCCGTGGCGAGGGTTTGCACGGCGGTGGTGGCAGAGGTCTTATTGGAAGTAGCAAGCAGGACATG GGGGGATCAGATGGCAGAGGTGGAAGCTCTGGTGAAGGGGGTGAAAACCTCTACCTGAAATCTGCTGATGATGGAAACTA GCCGGCGAAATCGGTGAAATTCCTAGCATTTTACAACATGTTTGGTTCCACGGGGAATTGTTCTAGAGTCACTTTTCCTT AGAAGCTATAAGTCTTGGCTTTGCTTTAGATTCTGTGCAAATCGTGAAACTAAATATGCTATTAGTCTTTCTTAGTTAGG TAAAAAATCTAGCTTTTTCTTAGGCAAATGAAGAACAAGTAGCTAGGTGAAAAACTTAAATGCTGCTGCTTAGGTAATGT TTGTTTATCTTTTGGCTCTTAAGGCAAACTATCAAACTGTTGCCTTGATGATTCTAAAGTAGTAACATAAATTAAAGCAT ATCTTCTAGTTCTTAAGTTAATTGTGGTCAAATTCTGTGGTTGTTCTTTGTCAAGGTTTAATGTTTATTTTCCCAACCTC TGCATTTAGTTTTACCCGGGTAACTTCTTTTTCCTGAAAATTAGTTCTGTCGCCTATAAACTACTCACATAAAGTTCTCT CCAGAATTGATTTCGGTTTTACAATCAAACAGCC
CDS sequence (LotjaGi1g1v0783300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCAGCACCTGATGCAGATGCAGCCCATGATGGCTGCCTACTACCCCAACAACGTCACCACTGATCACATTCAGCA GTATCTGGATGAGAACAAATCCTTAATTCTGAAGATTGTCGAAAGCCAGAATTCTGGCAAGCTGACCGAGTGTGCCGAGA ACCAAGCAAGGCTACAGAGAAATCTCATGTACCTTGCTGCAATAGCTGATTCTCAACCCCAACCACCTAACATGCCTGGC CAGTACCCTTCTGGTGGCATGATGCAGCAGGGAGCACACTACATGCAGGCTCAGCAGGCACAGCAGATGACACAACAACA GCTAATGGCTGCAAGGTCCTCCCTTTTGTATTCACAGCAACCATACTCATCACTTCAACAGCAGCAACAAGCTTTGCAAA CCCAACTTGGTGTGAGTTCAGGTGGAAGTCAAGGACTTCACATGCTGCAAAGTGAAGCCAGTAATGTCAATGTAGGAGGC AGTGCCTCCATGGGTTCTGGAGGGTTCCCTGACTTCATCCGTGGCGAGGGTTTGCACGGCGGTGGTGGCAGAGGTCTTAT TGGAAGTAGCAAGCAGGACATGGGGGGATCAGATGGCAGAGGTGGAAGCTCTGGTGAAGGGGGTGAAAACCTCTACCTGA AATCTGCTGATGATGGAAACTAG
Protein sequence (LotjaGi1g1v0783300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLTECAENQARLQRNLMYLAAIADSQPQPPNMPG QYPSGGMMQQGAHYMQAQQAQQMTQQQLMAARSSLLYSQQPYSSLQQQQQALQTQLGVSSGGSQGLHMLQSEASNVNVGG SASMGSGGFPDFIRGEGLHGGGGRGLIGSSKQDMGGSDGRGGSSGEGGENLYLKSADDGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 220 | 220 | 2.0E-105 | – | |
| PANTHER | 1 | 220 | 220 | 2.0E-105 | – | |
| Pfam | 19 | 74 | 56 | 1.5E-21 | ||
| MobiDBLite | 173 | 220 | 48 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription coactivator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator. |
Expression pattern of LotjaGi1g1v0783300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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