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LotjaGi1g1v0784200.1

Overview

Field Value
Gene ID LotjaGi1g1v0784200
Transcript ID LotjaGi1g1v0784200.1
Lotus japonicus genome version Gifu v1.2
Description Peroxisome biogenesis protein 12; TAIR: AT3G04460.1 peroxin-12; Swiss-Prot: sp|Q9M841|PEX12_ARATH Peroxisome biogenesis protein 12; TrEMBL-Plants: tr|A0A0L9VKU1|A0A0L9VKU1_PHAAN Peroxisome biogenesis protein 12; Found in the gene: LotjaGi1g1v0784200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:135701937..135706772) extracted from Lotus japonicus Gifu genome v1.2.

GTTAACTTTAGCGTCAAAGTGCATTTTGCAGGTATATCCTCCGCCAAGCTCCACCACGGACATAATTGTTGCCACCGGAG TCTTCGACCTACATTCACCATACAAAGATCAGAAGTGTTTGAACTTTGAAGTTTTATTTCTTGAAAAATAGATAATTTTT CATTTTACAGACATTTTCTAAAATTAAAATTAAAAGAAGTTGATAAATAAAAGAATGGTGAAATGAGCCGAGAAATGGAA ATCGAAACGGAGAAGAGATGTTGTTTCAGGTGGGAGGCCAAGGGAGCCGCCCAACGTTCTTCGAGATGGCGGCGGCGGAG CAGCTTCCGGCCAGCCTCCGCGCCGCACTCACATACTCAATCGGCGTGTTAGCCTTGCGACGACCCTTCCTCCACAGATT CCTAGACTACGAAGACGAATCCTTCGCCTTCCTCATGCTCCTCCTCGAATCTCACAGTTTACGAACCACCGGTGAGTCGT CGACTTCATCGCTCACAAACTCATCAAACTTCACTGTTGAATTTCATTGCTCACAAACTCAGTGTTGAATTTCATTGCTG ATCGGTGTTTGTTTTCGTTGTTAGATGCTTCTTTCTCTGAATCGCTGTATGGACTTCGAAGAAGACCAGCCAATGTCACT GTTGATACTAGCGATAACGCTGCAGCTACCACTGCCACTGCTTCTGGGTTACACAGGCGCCAGAAAGTTCTTTCTGTTGT TTTTCTGGTATTCTCTAACCCCTAACCCTAATCCTAATTGGTCTCTCTGTTCAATCAACATTCAATTTTCTGTTCTCAGG AACGTTGGTTTTGTGTTTGTGTTTGTGTTTGTGTTTGTGTGTTTTTTCAGGTTGTGTTGCCATATTTGAAATCTAAGTTG CATACAATCTACAACAGAGAAAGGGAAGCTAGGCTTCAGGCTACTCTTTGGGGAGATGATAATGAAGCTGGAGTAGGAGG TTTTGAACAGGATTCACTTGTTTCCACACCAACCTTGGATGCCCATGCCTCCATTGCCGCACGGGTCCGAAGCAGAGTTC AGAAATTTGTTGGATTTTGCTACCCATGGTTGCATGCTAGCACTGAGGGTATGTTAAAAACAATTAGCTGAGACTTTGGG TTATGTTATCTGATTTATTGACGATGTCTGTCATAGCATACAAGTTTTCATTTTTGTCAGATAAACATAATTTTGAGAAT TCTTCAAGTGAATGCGGTTTATCTGTCCTGTTACAATTAGTGATAGTATTGTGAAGTATGAGTATTCCTAACCATCTTAC TTATTGTAGGTATGCATTTCACTTACAAGATGTTATACCTGTTGGATGCTACTGGATTCTACTCTCTAGCACTGCATGTG CTCCGGGTTCAGGTCTGCCGAGCTACAGGGCAAGAGCTGGTATGCATTTAGGATCATTGCATTTAGAAGAGTATCTATTA TTTAATTTGAAAAGAATTTCATATTGATTAGCAAACACAAGAAAGGAATTTGCCATATGATTGATTTTACCCCTTTACTA CTTTCATGTCAAGGTAGATGGATACCTCTTCTAGAATTTCAAAGATGCGTAGCCGTGAACGTGAGAGACTTCGTGGCCCG CAATGGTTGAAGGTATTTTGACTATTCTCTATCAGCTTAATGGTTTTATCTTCCCCTAAGTTTCCATGAATTAAGAAGAA ACTGAAAAAGTTAGTTCATATTCTCTTTTCTGCTTCTCACATGTTGACTAGTATATAATATTACATTTAGACTGAGAAAC TTGTTTACTGCATAATTAAACCTTCTACATCAGGTTTTACATGATAAAATGGTGAACTGACTTTCTTTTTGTATATAAGC ACATGATAATGCTGACTGTATGAGTAAATGTCTGTTTATGCTTCATTTTATCCACACAAACCTGATTATGAATGTATCAT ATATTTCGTAATGCAGACATTGCAAGGAGCATTACTCAGCTGTTCATACACTGTACTTGACTATGCACAAACCGGATTGA TTGCAGCAGTGTTCTTCTTTAAAGTAAGATGACTATCCCTTTTAATATTCTTTCTTCCTTCATTGAGTACTGGCAATATG CCAATACTAATTCAATTTTCTTGGTAAACATTAGCATACTTTAGCTTGGTGGATATTATTTGCTTAGTTTTGAATTTTAG AACTGATTACTCTTGGTTGGCTCAAACGCTTCACTCCATCCGTTGCCTGGGTGATTCACTGTGTCTTAAAGTTTGACTTC TTGTCTGTCTAGGGTTCCTAAGTATGCCCGGAAGTGACGGGCTGTTATATATGTTTTCTTTATGTACATATTACCAAGGA GCATAATCATTAACGCATCAACTGTGTGATTATATGTAGATGATGGAATGGTGGTACCAGTCTGCTGAGGAGAGAATGTC AGCTCCAACAGTATATCCTCCTCCCCCTCCACCTCCTCCACCAAAGGTAAAGAAAAAAAAAATTGTTTGTATTTCTCCAC TTCTTTTTTTCTCTATATGTACTTGCTTTCCACTTCTGGTCAAACAAATTATGATTTTAATTTTGATAGTAAAAGCTCAC TTTTCACTAGAGTATAGAATATAGATATTGCCAAATTTGTGATTGGTGCTTTGCCTTAGGGATCTGCAATGTTCTGTATA TCTAATATGTAATATGAACAGGTAGCAAAAGAAGGGGTACCGCTACCCCCAGACAGAGCAGTTTGCCCCTTGTGTTTGCA GAAGCGTGTAAATCCATCTGTAATTTCAGTTTCAGGGTTCGTCTTCTGCTATGCTTGTGTATTCAAGTATATTTCTCAGG TGAGAGATCTAGACAATTGTTGAGAGATTGTAATCTAAATCTAGATGAAACATTGTTGATGGTTTAATTGGAAGTTATAA TTCAAATTACTCTTCCTGTTTGAAGTTAAACTTACAAACTCAGCATTTGTTCCTATCTAATTATTTTTCTTTTTTGGTGT TTGTTCATGACAGTATAAGCGCTGCCCAGTGACGCTGATGCCTTCAACAGTTGACCAGATAAGGAGACTCTTTCATGATG TATAGGCCTCACAGTTGGAGCAAACCTGCTTGAATTGTTGCCATGAGTAGATGCGTAAAAGATTCATTACGATTGTTGTA CTAATGTATATTACTTTGGTAGTGTTAGAGAGGCTATGTAAGAGGGGCATCATTTTTGTTACTGCCCTCTTATTTATTCG TACACAGTTCTAAAATAAAAACACGATTTCAATGCTTCTTTTTCAACCTTATTTCATTGGCTAACTAAAGCATCACATTC TGCTTCTGCTTCAGGGATGAACAAAAAAAAGACAGTACAAATTAAGACATTTTTACATGTACTCGCAATATGCATCAAAT GGTCAAATAACACTAAGAAAGGAAAATAAGGCCTTGTCAATAATCATGCTCAATCTCTCTCCTCCATTTTAGTTTTCAGC AACACTAGCTTCGAACGCCCGATCTAGTCTGGTCTTCACTCTTGGAGAACTCCATTTTAGTTTCGCATCCTGCAACACAA GCAATTATTATCTAATTTGTACACCCTCATTCAGCCACTATCTAAATAATGAAATTCACTTCACTTACCTTTCCACTGTT GTTGGATTTCGAATTCTTGCTCTGCCCTGTATGACTCCAGTAACTCCCCACAGTTCCTATGATAGGTGTATCGTCCGGAC TCGGACTTCTAGTCCTTCTTGAAGATGCAGATACTGAGAACTTTTTTATCTCCTCAACTGTCAATGCTCCCAGAATTGGC CTATCCTCACGACTCCAAGGTGAACCTCTTCCTCCATTTGGTGTCTGTTCTCCCACAGAATTTGTACTATTCATGGAAAC CGGTGTAGTTTCCGAATCAGCCAACCAGTTTGAAAGGCTGGTGTCTACCCCAACTTCTTTCTTCTTGTCATTGATCTTCC TCTGCCTTGCATTGCGGTTTGACAGCTTCAAATTTGGCTCTGGGGTAGTGGGTATGTCAACATCCTGCACTACCGAATTG ATGTTTTCTTTATCGTCATTTGGAGGCTGTAGCACTGTTGCTTTGATCACACTTCCTTGAGCAAGATTCTCAATTGGATT CAGCACTGAAGAGTCATCTAGAATCCTTCCTTGAGTTTCTTCATTTGTGATAGGAACTGAAACATCTGCTGGAATTATAC TGTTGACTTCATTCTCTGCTTTTTCAGTTGATGAAAATCGTCTTATAGAATCAGTGGATAGAGAAAACAGAGATTCTGAA GACTCTTCTTGAGCCTGTTCTTCCATATTAACATCCTCATATCCATCATCAGAGCAATCTTGATATCGATAATTGGAGAC ATGGTGATTCGACCCTGTTGCTTTCCCTTTGTCCTCATTGTTTTCCTCCAACTTGTTGATTAGTTCTTCAGCAGAAGATT TCACCTTTCTCATGATTGGTTGCTCATCTAGCAGCATGGTGTTCTCTTCCTCTGCTTCCTTCTCTGATGGCTTTCCCTGA GAATCATTTCCAAGTGGATTCATTACTGACCCAGATGCTTCATGTGCCTCTTTTATGGTGTGGATGACACGAGGGAGTTG CATTGGACTATCAACTTCAATCTCCATATTTGTGGCAGCTGAAACTTGTTTTCTAGATTCAAAGGACAGTGAAAAGAGTG ACCCTGAAGATTCTTCTTGAGCCAATCCTTTACTAAACTCATCATCCCCTTCATCACTATCCTTCTTCTCCTCACTTGAT GCTTTTTCATGCTCCTCCTTTGTTCCTTGACTTCCTTCAATGTTCTTTGCTAGTTCCTTGGTAGATGTAATTTCAGCTTC AGCACCTTTAATTGATTGCTCTTCAATTGCTATTCT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0784200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGTTTCAGGTGGGAGGCCAAGGGAGCCGCCCAACGTTCTTCGAGATGGCGGCGGCGGAGCAGCTTCCGGCCAGCCT CCGCGCCGCACTCACATACTCAATCGGCGTGTTAGCCTTGCGACGACCCTTCCTCCACAGATTCCTAGACTACGAAGACG AATCCTTCGCCTTCCTCATGCTCCTCCTCGAATCTCACAGTTTACGAACCACCGATGCTTCTTTCTCTGAATCGCTGTAT GGACTTCGAAGAAGACCAGCCAATGTCACTGTTGATACTAGCGATAACGCTGCAGCTACCACTGCCACTGCTTCTGGGTT ACACAGGCGCCAGAAAGTTCTTTCTGTTGTTTTTCTGGTTGTGTTGCCATATTTGAAATCTAAGTTGCATACAATCTACA ACAGAGAAAGGGAAGCTAGGCTTCAGGCTACTCTTTGGGGAGATGATAATGAAGCTGGAGTAGGAGGTTTTGAACAGGAT TCACTTGTTTCCACACCAACCTTGGATGCCCATGCCTCCATTGCCGCACGGGTCCGAAGCAGAGTTCAGAAATTTGTTGG ATTTTGCTACCCATGGTTGCATGCTAGCACTGAGGGTATGCATTTCACTTACAAGATGTTATACCTGTTGGATGCTACTG GATTCTACTCTCTAGCACTGCATGTGCTCCGGGTTCAGGTCTGCCGAGCTACAGGGCAAGAGCTGATGGATACCTCTTCT AGAATTTCAAAGATGCGTAGCCGTGAACGTGAGAGACTTCGTGGCCCGCAATGGTTGAAGACATTGCAAGGAGCATTACT CAGCTGTTCATACACTGTACTTGACTATGCACAAACCGGATTGATTGCAGCAGTGTTCTTCTTTAAAATGATGGAATGGT GGTACCAGTCTGCTGAGGAGAGAATGTCAGCTCCAACAGTATATCCTCCTCCCCCTCCACCTCCTCCACCAAAGGTAGCA AAAGAAGGGGTACCGCTACCCCCAGACAGAGCAGTTTGCCCCTTGTGTTTGCAGAAGCGTGTAAATCCATCTGTAATTTC AGTTTCAGGGTTCGTCTTCTGCTATGCTTGTGTATTCAAGTATATTTCTCAGTATAAGCGCTGCCCAGTGACGCTGATGC CTTCAACAGTTGACCAGATAAGGAGACTCTTTCATGATGTATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0784200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLFQVGGQGSRPTFFEMAAAEQLPASLRAALTYSIGVLALRRPFLHRFLDYEDESFAFLMLLLESHSLRTTDASFSESLY GLRRRPANVTVDTSDNAAATTATASGLHRRQKVLSVVFLVVLPYLKSKLHTIYNREREARLQATLWGDDNEAGVGGFEQD SLVSTPTLDAHASIAARVRSRVQKFVGFCYPWLHASTEGMHFTYKMLYLLDATGFYSLALHVLRVQVCRATGQELMDTSS RISKMRSRERERLRGPQWLKTLQGALLSCSYTVLDYAQTGLIAAVFFFKMMEWWYQSAEERMSAPTVYPPPPPPPPPKVA KEGVPLPPDRAVCPLCLQKRVNPSVISVSGFVFCYACVFKYISQYKRCPVTLMPSTVDQIRRLFHDV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 343 343 - –
PIRSF
PIRSF038074
1 387 387 2.7E-147
IPR017375
PANTHER
PTHR12888
2 386 385 1.4E-135
IPR017375
PANTHER
PTHR12888:SF0
2 386 385 1.4E-135 –
Pfam
PF04757
21 297 277 3.4E-44
IPR006845
Gene3D
G3DSA:3.30.40.10
320 384 65 3.6E-6
IPR013083
SUPERFAMILY
SSF57850
325 383 59 2.65E-11 –
CDD
cd16451
333 374 42 3.79618E-20 –
Phobius
TRANSMEMBRANE
344 363 20 - –
Phobius
CYTOPLASMIC_DOMAIN
364 387 24 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005779
Cellular component Integral component of peroxisomal membrane The component of the peroxisomal membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0006625
Biological process Protein targeting to peroxisome The process of directing proteins towards the peroxisome, usually using signals contained within the protein.
Subterm of
GO:0008022
Molecular function Protein C-terminus binding Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0784200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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