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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0784600 |
| Transcript ID | LotjaGi1g1v0784600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT3G23250.1 myb domain protein 15; Swiss-Prot: sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4; TrEMBL-Plants: tr|I3SF97|I3SF97_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0784600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135728999..135730406) extracted from Lotus japonicus Gifu genome v1.2.
TCAATTTCAATTATAGCTTCTGAGAAGTAAAAAAGGAATTGTCAATTGTGAAATACCCACAAAAGGCGATAACACTATAT CAAGTACTTTAAGCATGCTATTTATTTGGACTTTTCACCATTATATTTATAGAAGAACCGAAGCTACCTTGAAAGAGCTT GAGCCACACCAAGATTGTACAGAGAAATAGAGACACATTATTTAATTTGTGTTGTTGAACTGTGAATTGCTGCAGTGATA TCAACCATGGCAAAGACTCCTTGTTGTGAGAGGATGGGGATGAAGAAGGGACCTTGGACTGCTGAGGAAGATCACATATT GATTTCTCATATTCAAACATATGGCCATGGAAACTGGCGTGCTCTTCCTAAACAAGCAGGTAAGTGCAACTTATGCACAA AGTGCACATTTCCTAATACAATTGATTCTAAAGTCAAAATTATTTTTGAGAAGAAACTTATGTGAGTAGCTTTTGAGTTG TGAGTATCGGAATTGATTATGAGAAAATATGAAATGTTCCTAAATGTATGGTTATATACAATATGACTGTTTAGGTTTGT TGAGGTGTGGGAAAAGTTGTAGGCTTCGATGGATAAATTACTTGAGACCAGATATCAAACGAGGGAAATTCAGCAAGGAA GAAGAAGATACCATCCTAAAGCTACATCAACTTCTAGGAAATAGGTGGGTACATGTACAACATATTGACTATGCATGAGT TCTGGCCTATGATATTATTATGGAATTTGGTCAAGTAGTTAATTAAAGATCAAAATTAATTCCTTGATGAATCCCTTGAT GCTTAATTAGATGGTCTACTATTGCGGCAAGATTACCAGGACGAACAGACAATGAAATTAAGAACTTTTGGCATACACAT TTGAAGAAGAGGGTGGAGAGAGGTGAAGTGCACGCAGCCAATACCTCTTCACATACCTTGCAAGATGGTTCAGGCACTCT ATTAGCTATGCCACAAGTACTAGCTGTGGATGCATCAAATGCTGCTTCTATTGTCAATTATGGTTCTACCTCAGGGAAGA ATCCACCTTGTGATACTTCAGGAGAAACCATGGGCAATCATGGTTCCAATCAGATCAGTGAAGAAATGGAATTTTGGTAC AACATATTCATCAAATCAGGACAGCCATCATGAGGGAATCAAAATTTTAGGATAGATTGCCTCATATGACGCCTCATGTC ATATGGTACCTTTTTTTTTATGTCAATTTTGGTTTTAGCTTTGTGTGTGTACAAACTAAAATTTGTGTTTAGTAAGGGTT TGTAAAATTTCAATTGTATAACATTAATTTCAATTAAAATGAGTTTGATTTGAATTTGAAACTTTTGACAAGACATAAAT TGTAGTAAAACTTCTAATGAAAGTTGTTTTTTAGGAATTCCTTTAAAA
CDS sequence (LotjaGi1g1v0784600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAGACTCCTTGTTGTGAGAGGATGGGGATGAAGAAGGGACCTTGGACTGCTGAGGAAGATCACATATTGATTTC TCATATTCAAACATATGGCCATGGAAACTGGCGTGCTCTTCCTAAACAAGCAGGTTTGTTGAGGTGTGGGAAAAGTTGTA GGCTTCGATGGATAAATTACTTGAGACCAGATATCAAACGAGGGAAATTCAGCAAGGAAGAAGAAGATACCATCCTAAAG CTACATCAACTTCTAGGAAATAGATGGTCTACTATTGCGGCAAGATTACCAGGACGAACAGACAATGAAATTAAGAACTT TTGGCATACACATTTGAAGAAGAGGGTGGAGAGAGGTGAAGTGCACGCAGCCAATACCTCTTCACATACCTTGCAAGATG GTTCAGGCACTCTATTAGCTATGCCACAAGTACTAGCTGTGGATGCATCAAATGCTGCTTCTATTGTCAATTATGGTTCT ACCTCAGGGAAGAATCCACCTTGTGATACTTCAGGAGAAACCATGGGCAATCATGGTTCCAATCAGATCAGTGAAGAAAT GGAATTTTGGTACAACATATTCATCAAATCAGGACAGCCATCATGA
Protein sequence (LotjaGi1g1v0784600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKTPCCERMGMKKGPWTAEEDHILISHIQTYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEDTILK LHQLLGNRWSTIAARLPGRTDNEIKNFWHTHLKKRVERGEVHAANTSSHTLQDGSGTLLAMPQVLAVDASNAASIVNYGS TSGKNPPCDTSGETMGNHGSNQISEEMEFWYNIFIKSGQPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 171 | 171 | 1.5E-84 | – | |
| PANTHER | 1 | 171 | 171 | 1.5E-84 | ||
| ProSiteProfiles | 9 | 61 | 53 | 15.004 | ||
| SUPERFAMILY | 10 | 108 | 99 | 4.67E-31 | ||
| Gene3D | 12 | 67 | 56 | 5.1E-20 | – | |
| SMART | 13 | 63 | 51 | 1.2E-12 | ||
| Pfam | 14 | 61 | 48 | 3.8E-14 | ||
| CDD | 16 | 61 | 46 | 1.57625E-10 | ||
| ProSiteProfiles | 62 | 116 | 55 | 26.694 | ||
| SMART | 66 | 114 | 49 | 5.7E-17 | ||
| Pfam | 67 | 112 | 46 | 5.2E-16 | ||
| Gene3D | 68 | 134 | 67 | 7.1E-21 | – | |
| CDD | 69 | 112 | 44 | 1.2135E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0784600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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