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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0784800 |
| Transcript ID | LotjaGi1g1v0784800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell division cycle 5-related protein; TAIR: AT1G09770.1 cell division cycle 5; Swiss-Prot: sp|P92948|CDC5L_ARATH Cell division cycle 5-like protein; TrEMBL-Plants: tr|A0A151SZ47|A0A151SZ47_CAJCA Cell division cycle 5-related protein; Found in the gene: LotjaGi1g1v0784800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135737103..135739134) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGATTATGATCAAGGGCGGTGTTTGGAAGAACACCGAAGATGAAATCCTCAAAGCTGCTGTTATGAAATATGGTAA GAATCAGTGGGCTCGAATCTCTTCCCTTCTCGTTCGTAAATCTGCCAAACAGTGCAAAGCTCGTTGGTACGAGTGGCTCG ATCCTTCCATCAAAAAGGTTAGGTTCTCTCTTTTTTCCCGATTCTGCTAGCATCTGTGAAAGTTGAAATTCCAGTGTCGA ATGAGAATTGAATTTAGGGTTAATTGGTTGATTTTGTGTTTTTTTTTTATTGTAGACTGAGTGGACTAGAGAAGAGGATG AGAAACTGCTGCATCTTGCGAAGCTTATGCCGACGCAATGGAGAACAATTGCTCCGATTGTTGGCCGTACGCCTTCGCAG TGTCTTGAACGGTATGAGAAACTGCTTGATGCTGCTTGTGTGAAGGATGATAATTATGAGCCGGGTGATGATCCGCGGAA ACTGCGTCCTGGGGAGATTGATCCGAATCCTGAGTCGAAGCCTGCGCGTCCTGATCCGGTTGATATGGATGAGGATGAGA AGGAGATGCTTTCTGAAGCGCGAGCTCGGTTAGCGAATACTAAAGGGAAGAAAGCTAAAAGGAAAGCTAGGGAGAAGCAA CTCGAGGAAGCTAGGAGGCTTGCTTCTTTGCAGAAGAAGAGAGAACTGAAGGCTGCTGGAATTGATATTAGGCAGCGGAG GAGGAAAAGGAGAGGGATAGACTATAATGCTGAAATTCCCTTTGAGAAGAGGCCTCCTCCTGGGTTTTTTGATGTCGCTG ATGAAGATAGACCTGTGGAACAGCCCAAGTTCCCTACTACAATTGAAGAGCTTGAGGGAAAAAGAAGGGTTGATGTTGAA GCACAGCTAAGAAAGCAAGACATTGCCAAGAATAAAATTGCTGAGAGGCAAGATGCTCCGTCTGCTATTCTACACGCCAA CAAGCTGAATGACCCTGAAACAGTAAGGAAAAGATCAAAACTGATGCTTCCACCACCCCAGATTTCTGACCATGAATTGG ATGAGATTGCAAAGTTGGGTTATGCCAGTGACCTTGCAAGCAGTGAGGAACTCACAGAAGGTAGTAGTGCTACGCGTGCT CTTCTAGCTAATTATGCACAAACCCCCAGCCAAGGAATGACACCTTTAAGAACTCCTCAGAGAACACCAGTTGGTAAAGG AGATGCTATCATGATGGAAGCTGAAAATCTAGCCAGGTTGAGGGAGTCTCAGACACCATTGTTAGGAGGAGATAACCCAG AGTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAAATTCTGACTCCAAACCCAATGCTGACTCCCTCT GCAACTCCTGGAAGTGCAAGCCTTACTCCCAGAAGTGGTATGACACCATCAACTTCAAGGGATGGCTTTTCTGTTGGCAT GACTCCAAAGGGAACCCCGCTTAGGGATGAGCTACATATTAATGAAGACATGGATATGCATGAAAGTGCTAAACTTGAGC TACGGAGACAAGCTGATATGAGAAGAAGTTTGCGCTCTGGTTTAAGCAGCCTTCCACAGCCAAAAAATGAGTACCAGATA GTGATGCAACCAGTTCCAGAAGATGTTGATGAACCTGAGGAGAAGATTGAAGAGGACATGTCTGATAGAATGGCTAGGGA GAAGGCAGAAGAAGAGGCACGGCAACAGGCATTACTTAGAAAACGATCAAAAGTACTTCAAAGGGGACTTCCTAGGCCTC CTGCTGCATCTTTGGAGCTTATTAGAAACTCCTTAATAAGAGCTGATGGGGACAAGAGTTCATTTGTTCCACCAACCTCT ATTGAGCAAGCTGATGAGATGATAGGAAAAGAGCTCCTAACTTTATTGGATCATGACAATGCTAAGTATCCACTCGATGA GACAGCGAGTAAGGAGAAGAAAAAAGGAGCCAAGCATGTAGCAAATGGGCCTGCTGTCCCTATGATAGAAGATTTTCAGG ATGATGAATTGAAAGATGTATGTGTTCACTAA
CDS sequence (LotjaGi1g1v0784800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGATTATGATCAAGGGCGGTGTTTGGAAGAACACCGAAGATGAAATCCTCAAAGCTGCTGTTATGAAATATGGTAA GAATCAGTGGGCTCGAATCTCTTCCCTTCTCGTTCGTAAATCTGCCAAACAGTGCAAAGCTCGTTGGTACGAGTGGCTCG ATCCTTCCATCAAAAAGACTGAGTGGACTAGAGAAGAGGATGAGAAACTGCTGCATCTTGCGAAGCTTATGCCGACGCAA TGGAGAACAATTGCTCCGATTGTTGGCCGTACGCCTTCGCAGTGTCTTGAACGGTATGAGAAACTGCTTGATGCTGCTTG TGTGAAGGATGATAATTATGAGCCGGGTGATGATCCGCGGAAACTGCGTCCTGGGGAGATTGATCCGAATCCTGAGTCGA AGCCTGCGCGTCCTGATCCGGTTGATATGGATGAGGATGAGAAGGAGATGCTTTCTGAAGCGCGAGCTCGGTTAGCGAAT ACTAAAGGGAAGAAAGCTAAAAGGAAAGCTAGGGAGAAGCAACTCGAGGAAGCTAGGAGGCTTGCTTCTTTGCAGAAGAA GAGAGAACTGAAGGCTGCTGGAATTGATATTAGGCAGCGGAGGAGGAAAAGGAGAGGGATAGACTATAATGCTGAAATTC CCTTTGAGAAGAGGCCTCCTCCTGGGTTTTTTGATGTCGCTGATGAAGATAGACCTGTGGAACAGCCCAAGTTCCCTACT ACAATTGAAGAGCTTGAGGGAAAAAGAAGGGTTGATGTTGAAGCACAGCTAAGAAAGCAAGACATTGCCAAGAATAAAAT TGCTGAGAGGCAAGATGCTCCGTCTGCTATTCTACACGCCAACAAGCTGAATGACCCTGAAACAGTAAGGAAAAGATCAA AACTGATGCTTCCACCACCCCAGATTTCTGACCATGAATTGGATGAGATTGCAAAGTTGGGTTATGCCAGTGACCTTGCA AGCAGTGAGGAACTCACAGAAGGTAGTAGTGCTACGCGTGCTCTTCTAGCTAATTATGCACAAACCCCCAGCCAAGGAAT GACACCTTTAAGAACTCCTCAGAGAACACCAGTTGGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATCTAGCCAGGT TGAGGGAGTCTCAGACACCATTGTTAGGAGGAGATAACCCAGAGTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAG AAAAAGGAAATTCTGACTCCAAACCCAATGCTGACTCCCTCTGCAACTCCTGGAAGTGCAAGCCTTACTCCCAGAAGTGG TATGACACCATCAACTTCAAGGGATGGCTTTTCTGTTGGCATGACTCCAAAGGGAACCCCGCTTAGGGATGAGCTACATA TTAATGAAGACATGGATATGCATGAAAGTGCTAAACTTGAGCTACGGAGACAAGCTGATATGAGAAGAAGTTTGCGCTCT GGTTTAAGCAGCCTTCCACAGCCAAAAAATGAGTACCAGATAGTGATGCAACCAGTTCCAGAAGATGTTGATGAACCTGA GGAGAAGATTGAAGAGGACATGTCTGATAGAATGGCTAGGGAGAAGGCAGAAGAAGAGGCACGGCAACAGGCATTACTTA GAAAACGATCAAAAGTACTTCAAAGGGGACTTCCTAGGCCTCCTGCTGCATCTTTGGAGCTTATTAGAAACTCCTTAATA AGAGCTGATGGGGACAAGAGTTCATTTGTTCCACCAACCTCTATTGAGCAAGCTGATGAGATGATAGGAAAAGAGCTCCT AACTTTATTGGATCATGACAATGCTAAGTATCCACTCGATGAGACAGCGAGTAAGGAGAAGAAAAAAGGAGCCAAGCATG TAGCAAATGGGCCTGCTGTCCCTATGATAGAAGATTTTCAGGATGATGAATTGAAAGATGTATGTGTTCACTAA
Protein sequence (LotjaGi1g1v0784800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQ WRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLAN TKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRRRKRRGIDYNAEIPFEKRPPPGFFDVADEDRPVEQPKFPT TIEELEGKRRVDVEAQLRKQDIAKNKIAERQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDHELDEIAKLGYASDLA SSEELTEGSSATRALLANYAQTPSQGMTPLRTPQRTPVGKGDAIMMEAENLARLRESQTPLLGGDNPELHPSDFSGVTPK KKEILTPNPMLTPSATPGSASLTPRSGMTPSTSRDGFSVGMTPKGTPLRDELHINEDMDMHESAKLELRRQADMRRSLRS GLSSLPQPKNEYQIVMQPVPEDVDEPEEKIEEDMSDRMAREKAEEEARQQALLRKRSKVLQRGLPRPPAASLELIRNSLI RADGDKSSFVPPTSIEQADEMIGKELLTLLDHDNAKYPLDETASKEKKKGAKHVANGPAVPMIEDFQDDELKDVCVH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 633 | 633 | 0.0 | – | |
| ProSiteProfiles | 2 | 57 | 56 | 22.008 | ||
| SMART | 6 | 55 | 50 | 7.0E-15 | ||
| Gene3D | 7 | 56 | 50 | 1.7E-15 | – | |
| Pfam | 10 | 70 | 61 | 5.2E-13 | – | |
| CDD | 10 | 53 | 44 | 4.92121E-13 | ||
| SUPERFAMILY | 33 | 106 | 74 | 4.67E-21 | ||
| CDD | 55 | 106 | 52 | 2.18209E-31 | – | |
| Gene3D | 57 | 109 | 53 | 4.6E-10 | – | |
| SMART | 58 | 105 | 48 | 1.7E-12 | ||
| ProSiteProfiles | 58 | 107 | 50 | 16.443 | ||
| MobiDBLite | 110 | 150 | 41 | - | – | |
| Coils | 167 | 187 | 21 | - | – | |
| MobiDBLite | 213 | 237 | 25 | - | – | |
| MobiDBLite | 222 | 237 | 16 | - | – | |
| MobiDBLite | 271 | 291 | 21 | - | – | |
| MobiDBLite | 377 | 457 | 81 | - | – | |
| Pfam | 406 | 632 | 227 | 2.7E-53 | ||
| MobiDBLite | 409 | 439 | 31 | - | – | |
| MobiDBLite | 480 | 529 | 50 | - | – | |
| MobiDBLite | 512 | 529 | 18 | - | – | |
| MobiDBLite | 601 | 620 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0784800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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