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LotjaGi1g1v0784800.3

Overview

Field Value
Gene ID LotjaGi1g1v0784800
Transcript ID LotjaGi1g1v0784800.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Cell division cycle 5-related protein; TAIR: AT1G09770.1 cell division cycle 5; Swiss-Prot: sp|P92948|CDC5L_ARATH Cell division cycle 5-like protein; TrEMBL-Plants: tr|A0A151SZ47|A0A151SZ47_CAJCA Cell division cycle 5-related protein; Found in the gene: LotjaGi1g1v0784800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:135737103..135739947) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGGATTATGATCAAGGGCGGTGTTTGGAAGAACACCGAAGATGAAATCCTCAAAGCTGCTGTTATGAAATATGGTAA GAATCAGTGGGCTCGAATCTCTTCCCTTCTCGTTCGTAAATCTGCCAAACAGTGCAAAGCTCGTTGGTACGAGTGGCTCG ATCCTTCCATCAAAAAGGTTAGGTTCTCTCTTTTTTCCCGATTCTGCTAGCATCTGTGAAAGTTGAAATTCCAGTGTCGA ATGAGAATTGAATTTAGGGTTAATTGGTTGATTTTGTGTTTTTTTTTTATTGTAGACTGAGTGGACTAGAGAAGAGGATG AGAAACTGCTGCATCTTGCGAAGCTTATGCCGACGCAATGGAGAACAATTGCTCCGATTGTTGGCCGTACGCCTTCGCAG TGTCTTGAACGGTATGAGAAACTGCTTGATGCTGCTTGTGTGAAGGATGATAATTATGAGCCGGGTGATGATCCGCGGAA ACTGCGTCCTGGGGAGATTGATCCGAATCCTGAGTCGAAGCCTGCGCGTCCTGATCCGGTTGATATGGATGAGGATGAGA AGGAGATGCTTTCTGAAGCGCGAGCTCGGTTAGCGAATACTAAAGGGAAGAAAGCTAAAAGGAAAGCTAGGGAGAAGCAA CTCGAGGAAGCTAGGAGGCTTGCTTCTTTGCAGAAGAAGAGAGAACTGAAGGCTGCTGGAATTGATATTAGGCAGCGGAG GAGGAAAAGGAGAGGGATAGACTATAATGCTGAAATTCCCTTTGAGAAGAGGCCTCCTCCTGGGTTTTTTGATGTCGCTG ATGAAGATAGACCTGTGGAACAGCCCAAGTTCCCTACTACAATTGAAGAGCTTGAGGGAAAAAGAAGGGTTGATGTTGAA GCACAGCTAAGAAAGCAAGACATTGCCAAGAATAAAATTGCTGAGAGGCAAGATGCTCCGTCTGCTATTCTACACGCCAA CAAGCTGAATGACCCTGAAACAGTAAGGAAAAGATCAAAACTGATGCTTCCACCACCCCAGATTTCTGACCATGAATTGG ATGAGATTGCAAAGTTGGGTTATGCCAGTGACCTTGCAAGCAGTGAGGAACTCACAGAAGGTAGTAGTGCTACGCGTGCT CTTCTAGCTAATTATGCACAAACCCCCAGCCAAGGAATGACACCTTTAAGAACTCCTCAGAGAACACCAGTTGGTAAAGG AGATGCTATCATGATGGAAGCTGAAAATCTAGCCAGGTTGAGGGAGTCTCAGACACCATTGTTAGGAGGAGATAACCCAG AGTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAAATTCTGACTCCAAACCCAATGCTGACTCCCTCT GCAACTCCTGGAAGTGCAAGCCTTACTCCCAGAAGTGGTATGACACCATCAACTTCAAGGGATGGCTTTTCTGTTGGCAT GACTCCAAAGGGAACCCCGCTTAGGGATGAGCTACATATTAATGAAGACATGGATATGCATGAAAGTGCTAAACTTGAGC TACGGAGACAAGCTGATATGAGAAGAAGTTTGCGCTCTGGTTTAAGCAGCCTTCCACAGCCAAAAAATGAGTACCAGATA GTGATGCAACCAGTTCCAGAAGATGTTGATGAACCTGAGGAGAAGATTGAAGAGGACATGTCTGATAGAATGGCTAGGGA GAAGGCAGAAGAAGAGGCACGGCAACAGGCATTACTTAGAAAACGATCAAAAGTACTTCAAAGGGGACTTCCTAGGCCTC CTGCTGCATCTTTGGAGCTTATTAGAAACTCCTTAATAAGAGCTGATGGGGACAAGAGTTCATTTGTTCCACCAACCTCT ATTGAGCAAGCTGATGAGATGATAGGAAAAGAGCTCCTAACTTTATTGGATCATGACAATGCTAAGTATCCACTCGATGA GACAGCGAGTAAGGAGAAGAAAAAAGGAGCCAAGCATGTAGCAAATGGGCCTGCTGTCCCTATGATAGAAGATTTTCAGG ATGATGAATTGAAAGATGTATGTGTTCACTAAAGCACACACACACACACATAAACACGCGCACACACCCCTAGATATATA TATATGTATATATATATATATGTATGTATGTATATATATATATCTGTGTTTGTGGGTGTATGTGCGTGTGTTCATTTGCC GGATATGATGGTACAAACTTTTAAAAGTAGCTGTTGATTTTGATGTTATTCCGCTTTAATCTTGACTATGGTATAATTAG AGTTGAGCTCTTAAGTGGGTGGTTGATAATATCTATATTGCTTGCTATTTATTTATATGTTGTTCTTGACAGGCTGATCA TCTGATAAAGGATGAAGCTCAGTATCTCCGTGTGGCAATGGGGCATGAAAGTGATTCCCTTGACGATTTTGTTGAAGCTC ATACAACTTGCATTAATGATTTAATGTACTTTGTCACCCGTAATTCTTATGGTCTATCAAGTGTTGCTGGAAACATGGAA AAGCTAGCTGCCTTGCAGAATGAATTTGAGAATGTGAGAAGCAAGTTGGAGGATGGTAAGGAGAAGATGGTGCGCCTCGA GAAGAAGGTGACAGTGCTCACTCAAGGCTACGAGGTATGTTATTGCTATCCTGCATGTAAAATCTGAATTTGCTTTTACT TGCAGTGTTCCCTTGATATTGTTGTTACTTTTCCCGTCTAATTCCTTGGATACCAGTTGATGTGGTCTTTTTCTTGTTTA AGAATAGGCTTGCAGTAAATTTACTAATATATAACCACCTTATCAGTTGTTTGGTGCTAACTTAGTATTGGATAACATTA TCCATCAAATATCTCTTATCCACAAAAATGATGAAAATAACTTAA 

CDS sequence (LotjaGi1g1v0784800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGATTATGATCAAGGGCGGTGTTTGGAAGAACACCGAAGATGAAATCCTCAAAGCTGCTGTTATGAAATATGGTAA GAATCAGTGGGCTCGAATCTCTTCCCTTCTCGTTCGTAAATCTGCCAAACAGTGCAAAGCTCGTTGGTACGAGTGGCTCG ATCCTTCCATCAAAAAGACTGAGTGGACTAGAGAAGAGGATGAGAAACTGCTGCATCTTGCGAAGCTTATGCCGACGCAA TGGAGAACAATTGCTCCGATTGTTGGCCGTACGCCTTCGCAGTGTCTTGAACGGTATGAGAAACTGCTTGATGCTGCTTG TGTGAAGGATGATAATTATGAGCCGGGTGATGATCCGCGGAAACTGCGTCCTGGGGAGATTGATCCGAATCCTGAGTCGA AGCCTGCGCGTCCTGATCCGGTTGATATGGATGAGGATGAGAAGGAGATGCTTTCTGAAGCGCGAGCTCGGTTAGCGAAT ACTAAAGGGAAGAAAGCTAAAAGGAAAGCTAGGGAGAAGCAACTCGAGGAAGCTAGGAGGCTTGCTTCTTTGCAGAAGAA GAGAGAACTGAAGGCTGCTGGAATTGATATTAGGCAGCGGAGGAGGAAAAGGAGAGGGATAGACTATAATGCTGAAATTC CCTTTGAGAAGAGGCCTCCTCCTGGGTTTTTTGATGTCGCTGATGAAGATAGACCTGTGGAACAGCCCAAGTTCCCTACT ACAATTGAAGAGCTTGAGGGAAAAAGAAGGGTTGATGTTGAAGCACAGCTAAGAAAGCAAGACATTGCCAAGAATAAAAT TGCTGAGAGGCAAGATGCTCCGTCTGCTATTCTACACGCCAACAAGCTGAATGACCCTGAAACAGTAAGGAAAAGATCAA AACTGATGCTTCCACCACCCCAGATTTCTGACCATGAATTGGATGAGATTGCAAAGTTGGGTTATGCCAGTGACCTTGCA AGCAGTGAGGAACTCACAGAAGGTAGTAGTGCTACGCGTGCTCTTCTAGCTAATTATGCACAAACCCCCAGCCAAGGAAT GACACCTTTAAGAACTCCTCAGAGAACACCAGTTGGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATCTAGCCAGGT TGAGGGAGTCTCAGACACCATTGTTAGGAGGAGATAACCCAGAGTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAG AAAAAGGAAATTCTGACTCCAAACCCAATGCTGACTCCCTCTGCAACTCCTGGAAGTGCAAGCCTTACTCCCAGAAGTGG TATGACACCATCAACTTCAAGGGATGGCTTTTCTGTTGGCATGACTCCAAAGGGAACCCCGCTTAGGGATGAGCTACATA TTAATGAAGACATGGATATGCATGAAAGTGCTAAACTTGAGCTACGGAGACAAGCTGATATGAGAAGAAGTTTGCGCTCT GGTTTAAGCAGCCTTCCACAGCCAAAAAATGAGTACCAGATAGTGATGCAACCAGTTCCAGAAGATGTTGATGAACCTGA GGAGAAGATTGAAGAGGACATGTCTGATAGAATGGCTAGGGAGAAGGCAGAAGAAGAGGCACGGCAACAGGCATTACTTA GAAAACGATCAAAAGTACTTCAAAGGGGACTTCCTAGGCCTCCTGCTGCATCTTTGGAGCTTATTAGAAACTCCTTAATA AGAGCTGATGGGGACAAGAGTTCATTTGTTCCACCAACCTCTATTGAGCAAGCTGATGAGATGATAGGAAAAGAGCTCCT AACTTTATTGGATCATGACAATGCTAAGTATCCACTCGATGAGACAGCGAGTAAGGAGAAGAAAAAAGGAGCCAAGCATG TAGCAAATGGGCCTGCTGTCCCTATGATAGAAGATTTTCAGGATGATGAATTGAAAGATGCTGATCATCTGATAAAGGAT GAAGCTCAGTATCTCCGTGTGGCAATGGGGCATGAAAGTGATTCCCTTGACGATTTTGTTGAAGCTCATACAACTTGCAT TAATGATTTAATGTACTTTGTCACCCGTAATTCTTATGGTCTATCAAGTGTTGCTGGAAACATGGAAAAGCTAGCTGCCT TGCAGAATGAATTTGAGAATGTGAGAAGCAAGTTGGAGGATGGTAAGGAGAAGATGGTGCGCCTCGAGAAGAAGGTGACA GTGCTCACTCAAGGCTACGAGTGTTCCCTTGATATTGTTGTTACTTTTCCCGTCTAA 

Protein sequence (LotjaGi1g1v0784800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQ WRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLAN TKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRRRKRRGIDYNAEIPFEKRPPPGFFDVADEDRPVEQPKFPT TIEELEGKRRVDVEAQLRKQDIAKNKIAERQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDHELDEIAKLGYASDLA SSEELTEGSSATRALLANYAQTPSQGMTPLRTPQRTPVGKGDAIMMEAENLARLRESQTPLLGGDNPELHPSDFSGVTPK KKEILTPNPMLTPSATPGSASLTPRSGMTPSTSRDGFSVGMTPKGTPLRDELHINEDMDMHESAKLELRRQADMRRSLRS GLSSLPQPKNEYQIVMQPVPEDVDEPEEKIEEDMSDRMAREKAEEEARQQALLRKRSKVLQRGLPRPPAASLELIRNSLI RADGDKSSFVPPTSIEQADEMIGKELLTLLDHDNAKYPLDETASKEKKKGAKHVANGPAVPMIEDFQDDELKDADHLIKD EAQYLRVAMGHESDSLDDFVEAHTTCINDLMYFVTRNSYGLSSVAGNMEKLAALQNEFENVRSKLEDGKEKMVRLEKKVT VLTQGYECSLDIVVTFPV 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 727 727 0.0
ProSiteProfiles 2 57 56 22.008
SMART 6 55 50 7.0E-15
Gene3D 7 56 50 2.1E-15
CDD 10 53 44 5.06913E-13
Pfam 10 70 61 6.2E-13
SUPERFAMILY 33 106 74 5.75E-21
CDD 55 106 52 1.02986E-31
Gene3D 57 109 53 5.6E-10
ProSiteProfiles 58 107 50 16.443
SMART 58 105 48 1.7E-12
MobiDBLite 110 150 41 -
Coils 167 187 21 -
MobiDBLite 377 457 81 -
Pfam 406 656 251 1.7E-60
MobiDBLite 409 439 31 -
MobiDBLite 480 526 47 -
MobiDBLite 512 526 15 -
Coils 691 718 28 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0784800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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