Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0786300 |
| Transcript ID | LotjaGi1g1v0786300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | receptor-like kinase; TAIR: AT1G45616.1 receptor like protein 6; Swiss-Prot: sp|Q9MA83|RLP30_ARATH Receptor like protein 30; TrEMBL-Plants: tr|G7KHD8|G7KHD8_MEDTR Receptor-like protein; Found in the gene: LotjaGi1g1v0786300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135863841..135864566) extracted from Lotus japonicus Gifu genome v1.2.
GTGAAATTCTCCATATAGCTTCTTCTATTTTTCACATGGGGTGGTTTCCTTTACCATATTTTATCTTCCACTTGTTCTTG TTACTTTTTCTTCATTTTCCTTCATACACTTACTCACTGTGCAACTATCATGACAACTCTGCTTTGCTTCAATTCAAAAA CTCATTTGTTGTCAACACTTCAGCTGATAACATTTTTTATCGGTCTCCTTGTCCCTCTTTTCCTTCTAAGACAGAGTCTT GGAAAAACAATACAGATTGTTGTGCATGGGATGGGATCACGTGTGATGCCGTGTCAGGCCACGTGATTCGTCTCGACCTT AGTTGTGGTCATCTTCATGGTGAGTTCCATCCCAATAGCACCATATTCCAGCTGAGGCACCTTCAACAACTCAAACTTGT TTTGAATTATTTTTCTGTGTCTCCATTGTATTCTGGAATTGGTGATCTCTTTAGACAGACTCACCCATCTGAATTTATCA CACTCTGAAATCACGGGTGATATCCCTTCCACAATCTCTCACTTGTCAAAACTTGAATCTCTTGATCTCAGCGACAACTT TGAAATGAGACTTGATTTATCCACGTGGAAGAAGCTCATTCTTAACACAACTAATTTAACGGAGCTCCATCTTGATGGCA TAGACATGTCTTCCATAAGAGTTAGCTCTTTGATGAATTTGTCATCCTCCTTGCGTCTCTCTTCAACTAAGTGGGACTGG ATTACA
CDS sequence (LotjaGi1g1v0786300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTGGTTTCCTTTACCATATTTTATCTTCCACTTGTTCTTGTTACTTTTTCTTCATTTTCCTTCATACACTTACTC ACTGTGCAACTATCATGACAACTCTGCTTTGCTTCAATTCAAAAACTCATTTGTTGTCAACACTTCAGCTGATAACATTT TTTATCGGTCTCCTTGTCCCTCTTTTCCTTCTAAGACAGAGTCTTGGAAAAACAATACAGATTGTTGTGCATGGGATGGG ATCACGTGTGATGCCGTGTCAGGCCACGTGATTCGTCTCGACCTTAGTTGTGGTCATCTTCATGGTGAGTTCCATCCCAA TAGCACCATATTCCAGCTGAGGCACCTTCAACAACTCAAACTTGTTTTGAATTATTTTTCTGTGTCTCCATTGTATTCTG GAATTGGTGATCTCTTTAGACAGACTCACCCATCTGAATTTATCACACTCTGA
Protein sequence (LotjaGi1g1v0786300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGWFPLPYFIFHLFLLLFLHFPSYTYSLCNYHDNSALLQFKNSFVVNTSADNIFYRSPCPSFPSKTESWKNNTDCCAWDG ITCDAVSGHVIRLDLSCGHLHGEFHPNSTIFQLRHLQQLKLVLNYFSVSPLYSGIGDLFRQTHPSEFITL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| Phobius | 9 | 19 | 11 | - | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| PANTHER | 19 | 139 | 121 | 6.1E-29 | – | |
| PANTHER | 19 | 139 | 121 | 6.1E-29 | – | |
| Phobius | 20 | 27 | 8 | - | – | |
| Gene3D | 25 | 144 | 120 | 1.1E-24 | ||
| Phobius | 28 | 150 | 123 | - | – | |
| Pfam | 32 | 84 | 53 | 3.8E-10 | ||
| SUPERFAMILY | 48 | 129 | 82 | 1.97E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0786300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…