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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0788700 |
| Transcript ID | LotjaGi1g1v0788700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT3G61590.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9M310|FBK77_ARATH F-box/kelch-repeat protein At3g61590; TrEMBL-Plants: tr|A0A0L9VLT9|A0A0L9VLT9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0788700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136114630..136117242) extracted from Lotus japonicus Gifu genome v1.2.
CAATAATTAATCTTATTGTTACGAGTATGCAGAGCAGTAAACGACTAACTATAATATGCGTTTCATTTTCATGGACGATG ATGAAACCCCAACTTCATACTTTAAAATAACTTAACACACAATACATAAATAGATGAATTAACGCTGCTCACTCTCTCTC TCTTTCTCTCTCCTAAAGTGTTTTTTGTGTTGTGTTGCTTGGCCTTGTTTATCAACCAAATCTGGAGCCACCCATTTCTC TGTTCTTCCCTTTGAAAGCAAAATGCACGCCTCCTCCATTCCCCAAACTTGAATGCTTTTGAGGCACCTCTCAAAGAATC TTAATCGCTATTCACTGAATCTAATTTCCCATTTTCTTCGTCCCTTCCTTTTCGGGTCGCTCATATGAACGCTCATTGAA TTCCTTCCTTCCATACCCTTTTCCTGCAAACAAGGTATTTTCATTTCTCCAGTTCAATTCTCTCGAAAAAATTCAGTTTT TTTCAGAAAAAAGTTTATTGCTTTAGTGTTTTGCTCAATTGATCTGTATGTGTTTTGGGAATTTTGATATTAGATTGGGA TTTCTCAGGATCTAGGATTGGATGTTTGCTTGATGTGTATTTCACCTTTTTTTTTTCCAATTGTTTGAATTGTGCCTTAT GTTCAAGGTTATGGAAAGTTGCTTTGTGTCAAATGTTGTTTCTTTTCCTTTAAAGGGGAGTTAATTTTCTGTTTATATCT TCTTCTGTCCTTGTTGTATTTTATTCCAAGTTACTTTTGATTATTTACCCTGCACATGAATGTTATTTTTATTGTGATTT TTGCACAATAGATCATGGTTGGATGATCCAAAATACCCTTTTCATTTTGTTGTGACTAACTTGTGAGGTGCTTTACCTTG TTGAATTTGAACATAGGAAGACATATCTCCACAATCTAAGTATACCCTTTTATTTGTTATCATGATGCTTTATTAACCAA TTAACCATCTGTCTTTTTCTTTTATTCTTGTGTTGTAATATGGTCTTGTAGGTCTTTCCTTTCAACAACAATGGAAGGGG AAATATCATGGATAAGCCACTATGATAACAGACGAAGGGAGATTCGGGATTTTGTTTCACTTTCAGAACCTGGTGAGGAA GATGAAAAAGAAGGAACTATTGTTTCTGTGGATGAAGTTTTGCCTGGTGACTTGTTGGAACATATCCTAATGTATCTCCC CATTGCGAGCATTTTTAGAGCTTGTTGTGTGTGTAAAAGATGGCGTGAAATTGTTACTAAAGAGAGGTTTTTATCGAACC TTTCACATATTCTTCCGCAGAAACCTTGGTACTTTATGTTTACAAACTGTGATGAACCAATCGGTTATGCTTTTGATCCC TTCCTTCGCAAATGGTATGGCGTTGAACTTCCATGCATTGACACTTCTAATTGGTTTATTGCTTCATCCGGTGGCATGGT TTGCTTCATGGACTATGACATCAAGGATGAATTATACGTCTGCAACCCTATTACCAAAAGCTACAAGAAACTTGAGGACC ATCCAGCTTTGAAATTTTCTGATTACAATGCATTAGCACTCTCAGTGAACAGGGAATCTCACAGTTACACCGTGGCAATT GTAAGATCTAAGCAAGTCCCAAAAACCTTTTTCGAGTGGGATATCTCAATTCATTTATACCATTCAGAAAAAGTAACTTG GGAGACACCTTTAACAGAGGTTTCGATGGGTTGGAGAGGTGGTAACGAGAGTGTGATATGTAATGGGGTGCTATACTTTT TAGCTTACTCAACTGGAGGCGGCCTGCTGGAAAATCGCCATGCCCTAGTTGCATATAATTTGTCCAACTGTTCTTCTCAA GATAGCTTAACAACGAGCTTTATTCCAGTACCTTGTTATCTAACATGTGCCCGTCTAATGAATTTGAAGGGGAAGCTTGT AATGGTGGGAGGAATCGGTAAATCAGCTCGACATGACATAATAAAAGGAGTTGGTATATGGGTTCTGAATGATAGGAAGT GGGAAGAGATTGGACGAATGCCGCTCAAATTCTTCCAAGGCTTTGGGGAGTTTGATGATGTTTTTGCTAGTAGTGGTGCA GATGATCTTATATTTATTCAAAGTTATGGAGCTCCCACTCTTCTCATATATGACATGAGCCATAACCAATGGAAATGGTC ACCAAAGTGCCCTGTGACAAAAAGATTTTCCCTGCAGTTCTTTACTGGTTTTTGCTTTGAGCCTAGGCTTGAAATTGCTC CATAGATCTCCATACAATCAATGCTGTTATTGAGACTTGTATCTGAGGCTCTTCAGCTTATGTTCTTCCTTGTTCTTTGA GCTAAAATTTAATATGATTTTTGTATGTTAGCATTTCATACAAGATGTATTTGCTGATAAAACTTCTTAGTCATGAATAC GAGATTATTATTCAAAGCACTTAAAAATACCACAACTATATTATTTTTACCTTTTTTTATTCTCTCTGTTCATGCTCTTG CTCTAATAAGAATTCCTGCCTTCTCCATTTCTTTTGGTGTTAAGAAATGATTATGCCGTACTCGCCCCCTCTCTATATTA CACTCCTCTTGTTGGGATTATGATTATCTCGTATATTACATTACAATGTCAAA
CDS sequence (LotjaGi1g1v0788700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGGGAAATATCATGGATAAGCCACTATGATAACAGACGAAGGGAGATTCGGGATTTTGTTTCACTTTCAGAACC TGGTGAGGAAGATGAAAAAGAAGGAACTATTGTTTCTGTGGATGAAGTTTTGCCTGGTGACTTGTTGGAACATATCCTAA TGTATCTCCCCATTGCGAGCATTTTTAGAGCTTGTTGTGTGTGTAAAAGATGGCGTGAAATTGTTACTAAAGAGAGGTTT TTATCGAACCTTTCACATATTCTTCCGCAGAAACCTTGGTACTTTATGTTTACAAACTGTGATGAACCAATCGGTTATGC TTTTGATCCCTTCCTTCGCAAATGGTATGGCGTTGAACTTCCATGCATTGACACTTCTAATTGGTTTATTGCTTCATCCG GTGGCATGGTTTGCTTCATGGACTATGACATCAAGGATGAATTATACGTCTGCAACCCTATTACCAAAAGCTACAAGAAA CTTGAGGACCATCCAGCTTTGAAATTTTCTGATTACAATGCATTAGCACTCTCAGTGAACAGGGAATCTCACAGTTACAC CGTGGCAATTGTAAGATCTAAGCAAGTCCCAAAAACCTTTTTCGAGTGGGATATCTCAATTCATTTATACCATTCAGAAA AAGTAACTTGGGAGACACCTTTAACAGAGGTTTCGATGGGTTGGAGAGGTGGTAACGAGAGTGTGATATGTAATGGGGTG CTATACTTTTTAGCTTACTCAACTGGAGGCGGCCTGCTGGAAAATCGCCATGCCCTAGTTGCATATAATTTGTCCAACTG TTCTTCTCAAGATAGCTTAACAACGAGCTTTATTCCAGTACCTTGTTATCTAACATGTGCCCGTCTAATGAATTTGAAGG GGAAGCTTGTAATGGTGGGAGGAATCGGTAAATCAGCTCGACATGACATAATAAAAGGAGTTGGTATATGGGTTCTGAAT GATAGGAAGTGGGAAGAGATTGGACGAATGCCGCTCAAATTCTTCCAAGGCTTTGGGGAGTTTGATGATGTTTTTGCTAG TAGTGGTGCAGATGATCTTATATTTATTCAAAGTTATGGAGCTCCCACTCTTCTCATATATGACATGAGCCATAACCAAT GGAAATGGTCACCAAAGTGCCCTGTGACAAAAAGATTTTCCCTGCAGTTCTTTACTGGTTTTTGCTTTGAGCCTAGGCTT GAAATTGCTCCATAG
Protein sequence (LotjaGi1g1v0788700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGEISWISHYDNRRREIRDFVSLSEPGEEDEKEGTIVSVDEVLPGDLLEHILMYLPIASIFRACCVCKRWREIVTKERF LSNLSHILPQKPWYFMFTNCDEPIGYAFDPFLRKWYGVELPCIDTSNWFIASSGGMVCFMDYDIKDELYVCNPITKSYKK LEDHPALKFSDYNALALSVNRESHSYTVAIVRSKQVPKTFFEWDISIHLYHSEKVTWETPLTEVSMGWRGGNESVICNGV LYFLAYSTGGGLLENRHALVAYNLSNCSSQDSLTTSFIPVPCYLTCARLMNLKGKLVMVGGIGKSARHDIIKGVGIWVLN DRKWEEIGRMPLKFFQGFGEFDDVFASSGADDLIFIQSYGAPTLLIYDMSHNQWKWSPKCPVTKRFSLQFFTGFCFEPRL EIAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 403 | 392 | 9.8E-172 | – | |
| PANTHER | 12 | 403 | 392 | 9.8E-172 | – | |
| Gene3D | 42 | 80 | 39 | 1.4E-9 | – | |
| SUPERFAMILY | 42 | 124 | 83 | 5.1E-15 | ||
| Pfam | 44 | 82 | 39 | 3.3E-10 | ||
| SMART | 44 | 84 | 41 | 3.1E-9 | ||
| ProSiteProfiles | 44 | 84 | 41 | 11.352 | ||
| SUPERFAMILY | 65 | 383 | 319 | 3.53E-12 | ||
| TIGRFAM | 135 | 368 | 234 | 1.4E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0788700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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