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LotjaGi1g1v0789600.1

Overview

Field Value
Gene ID LotjaGi1g1v0789600
Transcript ID LotjaGi1g1v0789600.1
Lotus japonicus genome version Gifu v1.2
Description Ribonuclease PH; TAIR: AT3G61620.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q9SP08|RRP41_ARATH Exosome complex component RRP41 homolog; TrEMBL-Plants: tr|G7L401|G7L401_MEDTR Exosome complex exonuclease RRP41; Found in the gene: LotjaGi1g1v0789600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:136174555..136179161) extracted from Lotus japonicus Gifu genome v1.2.

GAAACAAACCTAAACCCTTAAATCAAATATCTTTGGCTCGTAACACACAGTCTCCTCTCCGCGTTTCATCTTCTTCTGCA AGCGGAGGTTTTGATCTCCTTCCTCCACCAGCGACGGCGGCGGCGCGACGGCGTTCTTCTCCGTCTCTTTACCGTGCGCG TTTCATCTTCGGCGAGGTAGTTTTCTCTGCCGACGACCACTGCCGCTTCCTAGGGTCTTCTCTGTTAGTGGCCAAGGGTA AGCACTTTATAACTTTAGGGACAGAAGCAGATTATCCGTTGATTTTGTTTGCCACTGTTGCTTGTTTTGGGTCCTTTCCA ACGAAATTTGTGTTTGCCACTGTTACTTCTTTGAGATCTTTCTAATGTTACCCTAGGGACAGAAGCAAGGCTTCTTAGTA TTTTTTTTTTTGTGAAGCTCATTGACATATGATTGAAGTTTTAAGTTTTTAATTGTAAAGGCATTAACTTGTGTTTACTT GTCTCATGGTCTCTTAATTTCTCTTAAGCCGTGTCCCCGTATCCTATTTTTTGAAGTTTAGCCGTGTCGCCGTTCCCGTG TCCGTGTCCGAGTCCGAGTCCATGCTTCATAGTTCTTAACTATTCAATTATTTTTCATTATTCAGAACATAGCTAAACCT TTCAAACCAGCGTAAAATCGTTTGAACCAGATATCATTTTGAAAACCAACCATTTATTTACCCATTAGTTAGGGGCTTAG GGCCGACGATGTGGTCCTATTCACCCCTGCAACTTTCATCATCACTGATATAGATGCCAGTGAGCCTCATCTCTCCGCTT AAATGGCTGGTTGTGACACTTTGTACAGGGTTTCCTGTAGCTTATGGGGCTATAGGGTTATGACACGTTAAGATGAATCC GTGCAACGGCCAAAATTGGCTCCTAAAACACATGCTAATCGCTTAATTCTAATACCATATCTTTTTTTCTTTCTATCTTC CTTGCTTACACAAAATTTATTTGGCCCAGATTCTGCAAAGAACACGAAGTAACAGAAACATAGGCTGCTCAAACTACTGT CAACGTCTTTCTATTTTTTTCTCATCCTCCTCTCTCCAAACTTGAAGATGGAGTACGTCAGCCCAGAAGGACTCCGCTTG GATGGTCGCCGACCCATGGAGGTACTGTTATGACTATTATGTTTCTTGGATCCTTTTATTTTTATTCTATTTTATTTCTG TCTCATGAGCTTTACCCTTACCATCTTCTCCCCTATTTATGAAATCCTAGATGCGGCAAATTCGAGCAGAGATTGGTGCT GTATCCAAAGCGGACGGGTAAATGAATTATTGCTTTTGGGCTTAATTTTTTCCCTGCTCCTCACATTTTCCATTTTTCAT TTTTCTTAAACCAAGGTGTGATTTTATTTAAAGCATTTGACCATAAAGTTCTCTTTCATTTTGAAACCAGTTCTGCCATT TTTGAGATGGGTAATACAAAAGTGATTGCTGCTGTTTATGGCCCTAGAGAGGTACTATTTAATTATTTACCTTGCTTATG TATGGTTAATAGTTATTCTTGTGGGTAAATCTTTCTTATTTTAGGGGGCGGGGTAGCCTAAATTTTTAGAAAAGCTTTTA AGTTTCATTTCAGCTTTAGTTGATGTTTTCTATACCTTTCAGGTACAAAATAGGAGCCAACAAATGAGTGACCAGGCTTT GGTAGTGATTCTTGTCCTCTTAAAAGTTATAGTGCACTGGGTGTCATTTTGCTTTGTTCATCTGTGTTGTCTAAAATTTT GATTACTTTTAACTTCTTTGCATAAATTTAGGTTCGGTGTGAGTACAGCATGGCTAACTTTAGCACTGGAGATCGCATGA GGAAACCAAAGGGCGACAGGTTTTTCTCAACTATTTAAGATCCTAGTGGTTTTGTATGTTATTTATACTTGCTGAAATAA TATCAATGAACTCAGAAGATTCTCTAATGCTAGAATGATGAGACAAACTCTAGATTTTAACTTCTTTGTTAAATTTAAGT TTTCTGATGCTGCAGGAGATCAATTGAAATTTCTCTGGTTATTCGACAAACTATGGAAGCATGCATATTGACACATTTAA TGCCTCGTTCCCAGGTTTTATTGCAGCCTTTGGAACTTCTTTTGATATCTAATTTGTGTTTTTTTTTATAATGATAGTTA TTTTATTTGCAGATAGATATTTATGTCCAAGTTCTCCAAGCAGATGGAGGTAAGTTAAACCTCATAATAGGATCTTGTGA TCATCTTCTCCTCCCTTTGTTATTTTATTTTCTCTCATACCCGTTTTATGGAATGTTTGTTCTTGACATGCCTCTTGCAG GAACTAGATCTGCATGTATAAATGCTGCAACTTTGGCCCTTGCTGATGCTGGGATCCCTATGCGTGATCTTGTAACTTCC TGTAGTGCTGGATACCTTAATAGCACCCCTCTTCTTGGTATATTTATCTGTTTTACTGGAAATTTTAACTGGGTATTTAA CTAGGGTTGGGTTTGGGTGCCTTCTTTTATTTCAGACAACTTTTAAATTTTGATTCAACAGTGCATTGGGTCATCATAAT TATTGAAAGTTGCTAAATGAATATGGGCAGATTTGAACTATGTAGAAGACAGTGCTGGAGGTCCTGATGTAACTGTAGGA ATTCTGCCCAAGTTGGATAAAGTGACACTTCTTCAGGTTAGTTTTCATTTCTTATTATTTTCTCCGTATTTCTCTGGTAA TCAACAAAGTACAATAATTCAGCTAACTGGAATTTATTTTTATTCTCTTCTGGTACTAGGTTATGGATTGTATAAGCTTC TTGTATATTGTTAACGTTTCTAATGTCCTTACTGCTCTGGTATTAGCCTTTCTTGTAGAGATCCGGTGACCAAGGGCCCA TTTTTTCTTTCTACTCTTCCCCTTGCTCTCTGTCATTGATAATTCATACAGCTACATATAAAGCCTGTTGCTTTTGAAGC TGTACTCCCCCTCGCTCTCAAAATAATTCTCATCTTTAGCTCGAAAGTCAGGGTTACAGTTTAGACAGAAAAGTAAGAAG TTATAACATACTGTTGGGAAATCAAGGTTTGCTTTGTAATATATGTGCATGTTATAGCTTTAATGCATGTTTGGAAATCC TTCTAGAATTGATTTTGAAGCCAGGATCAATTCCGGGAAGAAGCTTCCGTGGGTAGTTTCTGGCTTTTAGAATTGATTTT GAGGAAAAAGAAAAACATCCAAATATGCTTATTCTCTTAAGTGCATTCATCTTTAGAGGAGTCAAATTCAAAGATTCTGG ACCTTTTGTTTACTTTCTATACTTTGTTACTTCAAGTCTACCTTTGGCCAATTTTATTGGAGTCACTTGAGCCTTTAGGA GAGATGATAGCCAAATCTTTGTCAAGTACCAGTTAATGATTAGTCAAGTATATATACCTTCATTTATCTTCATTGAATCA TTACTTTTGGGAACTCCAGTTTCACATCATTGCATCTCTTTTGTTAGTTCTCCGTATTTAGCCTGGTAGTAATAGTATAA AGTTGTGTTTCTTTTTGTAAAGGGGCTGCTACAAAGGCCGATTTAAATGGAGAACCTGGAATATTTTAACAAGAAATGGC TCACTGTAGCATTTTTATGAAGAGCTCAATCCATTTCTTTTCTACTCCTGTTTCTTAGGAATTTTCTCTAGCATTCCTTA ACCGCCTTGTTCCATAACATAGAATTGAAAAGCACTTATTTGAATTTGATAGTGTTGGGTTGAGTAAGGCATTTACTTGA TTTTTGGACTGTCAGTCATCATAGTTTATCTGCACTGCTCATTTCTTTGTTACTGTCTGTAGATGGATTCTAAACTACCA ATTGACATTTTAGAAAATGTTATGCAACTGGCAACTGAAGGCTGCAAAGCAATAGCAAACTACATACGAGAGGTAAGAAC CTGTCTTCCTTGATGTGATTATACTTAGTGATAACATGGTTAACATTCATTTCATAGCTTAAATCCTGATTTCTTTATTG GTTGACAGATTTTACTGGAGAACACAAAGCAACTTGAATATCGAAGGGGTGTATAATTTTATTGTAGAAGTAAGATTTCC AGTTTTGCTTCCATTTCAAGTTGGTTTACTACATAGTATGTGTTTACTGATGCTCTTAATTTTCCAGAACTGCAGGTTCA TTCTCCCTATAGTTGTGCGTTTTTCTTTTTTGGTTTAGGATTCAACTGTATCAACTGTGAAGCGGGAAATGTAGAGGTGA ATGTGCTTAGAAGTCACTGTGACCTGGTTTTCGTTTAGCCTTTGAACCCTCGCCAGTGTTTTGTTTTGTCTTAGCAGATG CATGAATTGTAAATTTGCCCAATTTCAGGTCCTATCCTATATCTTTGGGGTTGAACTTGTTATCATAATTTCAGTGCGGC GTTTCATTTCTTTGTTGACGAATATGATCAAATGAGTTTCTGTTCATTGTGGTGTAGAACATGAGTCAATGACCACTTCT AATACAAGTGAATGGTTTAGGACTATGCTGGTTTATTGCATGATACGAACCTGTTTTACATTGCTATTAACTTGTCAACT AAAATAACAAATGTGAAGAGAATAGAGAGAAATGGAAAAAATACGGG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0789600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGTACGTCAGCCCAGAAGGACTCCGCTTGGATGGTCGCCGACCCATGGAGATGCGGCAAATTCGAGCAGAGATTGG TGCTGTATCCAAAGCGGACGGTTCTGCCATTTTTGAGATGGGTAATACAAAAGTGATTGCTGCTGTTTATGGCCCTAGAG AGGTACAAAATAGGAGCCAACAAATGAGTGACCAGGCTTTGGTTCGGTGTGAGTACAGCATGGCTAACTTTAGCACTGGA GATCGCATGAGGAAACCAAAGGGCGACAGGAGATCAATTGAAATTTCTCTGGTTATTCGACAAACTATGGAAGCATGCAT ATTGACACATTTAATGCCTCGTTCCCAGATAGATATTTATGTCCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCAT GTATAAATGCTGCAACTTTGGCCCTTGCTGATGCTGGGATCCCTATGCGTGATCTTGTAACTTCCTGTAGTGCTGGATAC CTTAATAGCACCCCTCTTCTTGATTTGAACTATGTAGAAGACAGTGCTGGAGGTCCTGATGTAACTGTAGGAATTCTGCC CAAGTTGGATAAAGTGACACTTCTTCAGATGGATTCTAAACTACCAATTGACATTTTAGAAAATGTTATGCAACTGGCAA CTGAAGGCTGCAAAGCAATAGCAAACTACATACGAGAGATTTTACTGGAGAACACAAAGCAACTTGAATATCGAAGGGGT GTATAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0789600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEYVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQQMSDQALVRCEYSMANFSTG DRMRKPKGDRRSIEISLVIRQTMEACILTHLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGY LNSTPLLDLNYVEDSAGGPDVTVGILPKLDKVTLLQMDSKLPIDILENVMQLATEGCKAIANYIREILLENTKQLEYRRG V
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11953
1 239 239 1.5E-122 –
PANTHER
PTHR11953:SF0
1 239 239 1.5E-122 –
Gene3D
G3DSA:3.30.230.70
1 237 237 1.9E-84
IPR027408
SUPERFAMILY
SSF54211
6 175 170 7.59E-46
IPR020568
CDD
cd11370
8 233 226 6.84414E-146 –
Pfam
PF01138
18 148 131 2.7E-38
IPR001247
SUPERFAMILY
SSF55666
148 234 87 2.09E-26
IPR036345
Pfam
PF03725
152 216 65 1.7E-7
IPR015847

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0789600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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