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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0789900 |
| Transcript ID | LotjaGi1g1v0789900.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CMP-sialic acid transporter, putative; TAIR: AT5G41760.1 Nucleotide-sugar transporter family protein; Swiss-Prot: sp|Q8LGE9|CSTR1_ARATH CMP-sialic acid transporter 1; TrEMBL-Plants: tr|A0A0L9VLV3|A0A0L9VLV3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0789900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136193390..136196640) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAGTGGTACTCCGTCGCGGCGCTCCTCACCGTCCTCACCAGTTCTCAGGTATCTCTCTCTTAATCAATCAATGCTTC TTCTTAACTTGCTCATCATCATCATCTTCATTTCTTTCTCATCAATTTCACGTTGCAGGGAATCCTAACTACCCTCTCTC AAACTAATGGAAAGTATGACTACGATTATGCCACTATCCCATTTCTCGCTGAGGTTTTCAAGGTTCATATCTGCATCCAT CCAAGTTTCGATTTTGAACCAGAACTCGTTGGTGGGTCTCTCTCATCATTCATTCATATCTTGTTTGTCTGCTATTCTCA GCTTGCAGTGTCTTGTTTGTTACTGTGGAGGGAATGCAAAAGCTCACCTCTTCCGAAGATGACAACGGACTGGAAAACGG TGGCTTTGTACCCCATTCCTTCTGTTATATACCTGATCCACAACAATGTTCAGTTTGCTACACTCATGTATGTGGACACT TCAACATATCAGATAATGGGGAACTTGAAGATTGTTACTACTGGAATACTATTCAGGTGCATTGTTGTGTTTTCAGAATT CAGATCAACTGATCAATGTTCAGGTCAAGGTGTATTTGTTTAGTACTATGTTTTGTTTCTCATTTGGAGCTCATGTTATT TCTAGGCTGTTCTTGGGGAGGAGGCTTTCGAACTTGCAGTGGATGGCGGTTGGGCTGTTGGCTATTGGGACAACCACAAG TCAGGTGCCAATTTGCAACTCTAGTTCTCTGGCTTTAGATTGATTTTATAACAAGATTTCTGAACTTTATGCATTATTTG CTATGTATTATGAACTAAAGAACTCAGCATTGAGGACTTAGGTGAACTTTTTATCGTTCTAACACTTGTATGAGTAACTG TAACATGAGTTTAAGTGCCTATAGACACAAATGACCGAAAGCTTAAGATACATGGACATAGTAACAGTAATAGAAGATAA TGAAGTCTGTGTTAAAGTTTTATTATCTTGAGCTTTTGCTCAGTTCTGCCCATCTACAGATACTATGCTCACGGTAGAGT TTCTCAGTTTCTACACACTTGTATAGTTCTAATACAATAGGTCCTAATGTATCGCATAACTCTCGAACTTTATGAAGTCA TTTCCATACAGTAAAATGATTCCATCATAATTTGACTTCTATTGTTTTTTATGGAAGATGCCTTATTTGCACTCATTCAG CCAGCTGCTGACACTTGTATGGGGGTCTCAGAAGGGTTCTATGAATACTATAGATGGTTTATGTGTATGCTTATAAAGAG GACTTGACTGTACCTTCCTTTGGTCATTAGAGGAAGCACCCTTTCGGGGGAGTATATGAAATCCTCCTGAAAAACAAAAA TAAAACAGAGGGCCAGTGGCTTCCAAATGCTACAAAGCTGTCCCAGTGTCCAGTTTCTTTGCATGTTATTAGAAGAAATG CAAAGAAGTTGCATGTTAAATTATATAAATTTGAAGTCCAAATACATCATGTTAAAGACTAAATGCCCTAAATTGGCACA TTAAATTAATTAAGCTTTTTGCTTTGACTTAATTAGTTCCAAATCATTCTCCTTTCTCATTATATACAAAAAAAAAATTG TCATTAAGATGGAATCTCTATGCTCGTTCATTTTAGGTTAGGGGCTGTGGAGTGGCTTCATGTGACTCCCTTTTCTCAGC ACCAATTCAGGGTTACATGTTAGGAGTTCTATCTGCTTGTCTCTCAGCATTAGCTGGAATTTATACAGAGTTCTTAATGA AGAAAAACAGCGACACCTTGTACTGGCAGAATATACAGCTTTACACGTAGGTATTCTTTCTTGAATTTGTCATCTCAAAC ATCAACATAGGCACAGGCACACATCTCTCTTTTTTATTATCTTTTGAATTGGAGCCTTCAAATTTGTTTAGTCCGGAGTA AGGAGTATGGCATATATTACTGTTAAATTTGTATAGTCCGTTCACTGTAGGTTTCTAATTTCTGAACTCTTTCAACTTTG ACATTGTCTGTGTTTTTGTGTTTGATATTATGTGTTGTGCTTTATTTTGGTAGCTGTATGTAATGCTTAATACATTTGGA TTTGCATTATTGCTGGAATATCTGGTAGTATAAGCATGGAATACCTGTTTTTTCAGCTAATCTTTAGAAGTTAAATATTT AAATTATAAGGAATTTATCTCTGTAATGTCTTTTCTTTGAAATTTGCTAGTGATTTTTTTTTTACTTTCCCAATTCTCAA GTTGATGTTTCTGTAAAATTGGAAGATGTGACAAGGGCTGTTTGAGTAGTCCTTTTATGGCACTCTAGCATATAAATATG AACGACATGATCAGATGTCTCTTTTATTATCTACTAAGAGGAATACACACTAAATGAGTATCTCTCTCCAGGTTTGGTAC AATTTTCAATTTGGCACGACTTGTTGTGGATGATTTCAGAGGTGGATTTGAAAATGGGCCCTGGTGGCAACGTATTTTCA ATGGATACACTATCACTACCTGGTTGGTGGTATTAAATCTAGGGTCTACTGGTCTTTTGGTTTCATGGTTAATGAAATAT GCTGATAATATTGTCAAGGTATGTCCTTACACCAACTAGTAATTGTTTTGTGACACTAAAATGAGTAGTGAAGTATTGCA CCTCAGCATATGGTCTGTGTTTATTCATCGATCCCCTAACTATGAGTTTTGTCTGCTTTCTTTAGGTCTATTCCACTTCA ATGGCTATGCTGCTAACAATGGTACTATCAATATTTCTCTTTGACTTCAAACCTACATTGCAGGTAATTTTGTCTAAACA ATTCCTATATGTGTAGGTGACCATTTAGTGCTCTCCCATCATGGCCTAAGTTTTAGGCCAAGACTGATTTTATTTATTTA TTTGCACAGAATTTTAAATTTTAGATGTCACATAGAGATATGACTATATGATGATGTTTTACAGTATAAGCAAAGTTGCT TCAATTTAGAATCTATGTTCTTAAAGTTTGTACAATGCTTGTAATTAAAGTGCGCTATGCATTTTTTGAAAGGAGTGGCA TGAATAGATTTTCCCATTGTTCTCAGGCTATATAACTTACTGATTTTCTGTTCATTTCTCTTTGCAGCTTTTCTTGGGCA TTGTTATTTGTATGATGTCCCTACACATGTATTTTGCCCCATCAAAAATGCTCTTAGATATGCCATTAGCAGTTAAACCA GATGAAGAGAAGCTTATTGAAGATTCTGTCGATCGAAGAACACATTCATGA
CDS sequence (LotjaGi1g1v0789900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGTGGTACTCCGTCGCGGCGCTCCTCACCGTCCTCACCAGTTCTCAGGGAATCCTAACTACCCTCTCTCAAACTAA TGGAAAGTATGACTACGATTATGCCACTATCCCATTTCTCGCTGAGGTTTTCAAGCTTGCAGTGTCTTGTTTGTTACTGT GGAGGGAATGCAAAAGCTCACCTCTTCCGAAGATGACAACGGACTGGAAAACGGTGGCTTTGTACCCCATTCCTTCTGTT ATATACCTGATCCACAACAATGTTCAGTTTGCTACACTCATGTATGTGGACACTTCAACATATCAGATAATGGGGAACTT GAAGATTGTTACTACTGGAATACTATTCAGGCTGTTCTTGGGGAGGAGGCTTTCGAACTTGCAGTGGATGGCGGTTGGGC TGTTGGCTATTGGGACAACCACAAGTCAGGTTAGGGGCTGTGGAGTGGCTTCATGTGACTCCCTTTTCTCAGCACCAATT CAGGGTTACATGTTAGGAGTTCTATCTGCTTGTCTCTCAGCATTAGCTGGAATTTATACAGAGTTCTTAATGAAGAAAAA CAGCGACACCTTGTACTGGCAGAATATACAGCTTTACACGTTTGGTACAATTTTCAATTTGGCACGACTTGTTGTGGATG ATTTCAGAGGTGGATTTGAAAATGGGCCCTGGTGGCAACGTATTTTCAATGGATACACTATCACTACCTGGTTGGTGGTA TTAAATCTAGGGTCTACTGGTCTTTTGGTTTCATGGTTAATGAAATATGCTGATAATATTGTCAAGGTCTATTCCACTTC AATGGCTATGCTGCTAACAATGGTACTATCAATATTTCTCTTTGACTTCAAACCTACATTGCAGCTTTTCTTGGGCATTG TTATTTGTATGATGTCCCTACACATGTATTTTGCCCCATCAAAAATGCTCTTAGATATGCCATTAGCAGTTAAACCAGAT GAAGAGAAGCTTATTGAAGATTCTGTCGATCGAAGAACACATTCATGA
Protein sequence (LotjaGi1g1v0789900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQWYSVAALLTVLTSSQGILTTLSQTNGKYDYDYATIPFLAEVFKLAVSCLLLWRECKSSPLPKMTTDWKTVALYPIPSV IYLIHNNVQFATLMYVDTSTYQIMGNLKIVTTGILFRLFLGRRLSNLQWMAVGLLAIGTTTSQVRGCGVASCDSLFSAPI QGYMLGVLSACLSALAGIYTEFLMKKNSDTLYWQNIQLYTFGTIFNLARLVVDDFRGGFENGPWWQRIFNGYTITTWLVV LNLGSTGLLVSWLMKYADNIVKVYSTSMAMLLTMVLSIFLFDFKPTLQLFLGIVICMMSLHMYFAPSKMLLDMPLAVKPD EEKLIEDSVDRRTHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 335 | 335 | 2.1E-101 | ||
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| Pfam | 4 | 303 | 300 | 5.6E-55 | ||
| PANTHER | 5 | 334 | 330 | 2.9E-144 | – | |
| PANTHER | 5 | 334 | 330 | 2.9E-144 | ||
| Phobius | 5 | 13 | 9 | - | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Phobius | 19 | 33 | 15 | - | – | |
| TMHMM | 32 | 54 | 23 | - | – | |
| Phobius | 34 | 54 | 21 | - | – | |
| SUPERFAMILY | 50 | 141 | 92 | 3.14E-6 | – | |
| Phobius | 55 | 73 | 19 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 74 | 95 | 22 | - | – | |
| TIGRFAM | 77 | 303 | 227 | 2.9E-31 | – | |
| Phobius | 96 | 100 | 5 | - | – | |
| TMHMM | 98 | 120 | 23 | - | – | |
| Phobius | 101 | 120 | 20 | - | – | |
| Phobius | 121 | 126 | 6 | - | – | |
| Phobius | 127 | 144 | 18 | - | – | |
| TMHMM | 127 | 146 | 20 | - | – | |
| Phobius | 145 | 163 | 19 | - | – | |
| TMHMM | 161 | 183 | 23 | - | – | |
| Phobius | 164 | 184 | 21 | - | – | |
| Phobius | 185 | 195 | 11 | - | – | |
| TMHMM | 190 | 212 | 23 | - | – | |
| Phobius | 196 | 212 | 17 | - | – | |
| Phobius | 213 | 231 | 19 | - | – | |
| TMHMM | 232 | 254 | 23 | - | – | |
| Phobius | 232 | 254 | 23 | - | – | |
| Phobius | 255 | 260 | 6 | - | – | |
| TMHMM | 259 | 281 | 23 | - | – | |
| Phobius | 261 | 281 | 21 | - | – | |
| Phobius | 282 | 286 | 5 | - | – | |
| TMHMM | 286 | 305 | 20 | - | – | |
| Phobius | 287 | 305 | 19 | - | – | |
| Phobius | 306 | 335 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Golgi membrane | The lipid bilayer surrounding any of the compartments of the Golgi apparatus. | ||
| Molecular function | Pyrimidine nucleotide-sugar transmembrane transporter activity | Enables the transfer of a pyrimidine nucleotide-sugar from one side of a membrane to the other. Pyrimidine nucleotide-sugars are pyrimidine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Pyrimidine nucleotide-sugar transmembrane transport | The process in which a pyrimidine nucleotide-sugar is transported across a membrane. Pyrimidine nucleotide-sugars are pyrimidine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative. |
Expression pattern of LotjaGi1g1v0789900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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