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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0790100 |
| Transcript ID | LotjaGi1g1v0790100.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0790100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136201085..136206782) extracted from Lotus japonicus Gifu genome v1.2.
GCCCAAATTCATTCTATCTGAATGAAACGAAACGAAAAAGAAATTCCCTGCTGATCGTGCCGTCGCCGCGCCGCTGCTTC CGTCGCCGTTTGCCTTTCAGCCGCGTCTCCCATCGAGATCGAGGTAAATAACCTAACAATTGCTTGCTAATGCTACTGTA TCTGTATGTATCCATCTATCTATAATTGATTTGTAAATTCGATTCGATGATTGATTCAGATTGAAACCATGCTTGAGCAT ATGAACATTCACATTGATCCAGATTTGATAACTGAAATACTGTTGAGATTGCCAGTAAAGTCTCTTATGCGTTTCAAGGC TGTGTGCAAGCTTTGGCGCTCTCTGATTTCCGATCCCCATTTTGCAACATCACATTTTCAACGTGCTTCTCCTACACTCC TCTTCGCTAGTTGTGATGCCATTCGAACCATAGACTTTGAGGGTCCGCTTCACTATGATCATGTTTCTCAACCAATCAAT TATCATTTAGTGTCGTCTACTCCTATTAAAATTGCAGGTTCATGGCTAATCAACTATAATAATAATCATACTCTTTACCT GTGGAATCAATTATCATTTAGTGTCGTGACCACGTCTACTCTTATTGGAATTGCAGGTTCATGTAGAGGCTTTCTGCTAA TCGAATATAATGATACTCTTTACGTGTGGAATCCATCCACACATGTCCACATATCAATACCACCTTCATTTCCGGTTAAT GTTGTTGACAGCGACACCGATGATGTTTTTACTCATCTATATGGATTTGGTTACCATTCCTCAAAAGATGACTACTTGGT GGTTCAAGTGCCTGTTCCGTACAATTACGCAACTACTTATTTACCACATGTGCAGTTTTTCTCATTCAGAGCTAATATGT GGAAATATACTGAGGGTGTTGATTTGCCTCCCTTGAACTCTATTGACTGTAGTCACGGGTTGCTCTTCAACGAGGCCATT CACTGGGTGGCTCGAAACTGGGTGGATGGTATTACGACATATTTTATTATTGCCTTTGATTTAATGGAAAAGAGACTTCT AGAGATACCCCAGCCTCATGATTTTCTTGCCCATCGTTATTTGACTAATTTGTGGGTGCATGGAAGATATTTTAGTCTAT CAGTTGAGCGGAGAGATTATACATGTGAAATATGGGTTATGAAGAAATACAAAGTACAGACATCTTGGACCAAGACTGTT GTTCTATCTTTCGACAGCGTTGACTATCCAGTATGCTCTACAAAAGGTGGTGATATTGTTATGTTATCTGGAGATATACT GAAAAAGTATAGTGACGAAGGAGTAGTACAAGGAGAACAACTAGATTCTCAGAACGATTCTAGTTATTGTGGTTTTCTCA ATCCATCAGCTCCCCTGTATACAGAGTCAATGCTTTCACTCCCTGATATTAGTGACTGAAATCTCCACAAGAGCTTCGCT TTGTAAGTAAGCTCCTCAAATTTCACTTTCAATTTGTTAGAAATACATTTATTTATGCCTTCTATTATAGTTGTAATGTT TGTGGAGTTATAGTCTTCTTTAAAGATCTGGAGATTCAACCATTGTTGGGAGTTTTTTTAAGGCAACTCTAGACTAACAC TCCTACCACAAAGACTCTAATCATTGCTGTTTTGGTTTCTAACTTTGTGGAACCTTACTATGCTGGATGTAGTGAACTCC ATTTCAAAGATGGAAAGACTAATAGTTTCATATGGGTAACACCATGGCAATATAATGACACAAAACCTATCATTGATTAC AAATCTGAGATCACAAGAATAGGTGTTAGAACCAGATGTTTTATTGATGATAAACCCTAATTCCCAAACTGAGAATCAGG GCAGAGTACAAGAGAAAGAGTCCACACTCAATCTCAAGAGAGTCCACACCCTCTTCCTAGGCCCCAAAACCCAAAATGAA CTAAAAGATACCCCTAACTCTCTAATGTCTGTTATTTATAGGCTACATGCCTCAATGACATTCTAACTAACTCACTAAGT ATAACTAACTAACTAACTAACCCCTAACCTTGAGTTCCTATCAATAGGCTTAGGCTCACTCGAAAATGAATGTAGGAAAA TGGGTGATTTTATGCCTATTGTGATTTTGGTGGAGGGATAGGAGGTCCTCTGCAATGAAATTCTAGAACTGAGTTGTTAG AAGCTGTACTAAGAAACCGTAATTATGTGTTTGTAGCTTTTTGATTCATTCATAACTACCCACAATTCGTGAAGAAAGAT CCATTTATAGAAAACAAACATGCATACATTTTAAATAGGTTTTTTTTTTTACTGAAACAAATCATCATCAATACCTTCTT CTCTATTAGGTTCATAATCATTTTCACTTTCAAACAAATCATCTGGATGTCAAAGAAGTCTCAGAAGGTGCAACAGTGTA AATTCAGAGATAGAAAATTCCATCCAGGGAGCAATTGCACACTGCAAGAATTCCCAGCAGATGTTCTCTTCAAAGGAGAA TGCAAGTGATGTTGGACTCTACTCATTGCCTGAATTCAGAACCTCAGTTTGCGAGGATCAAGAAAGAGTTGAGCCTTGTA GGGGTTGATAGCTTGGGAATAAAAACTAGCTTTCTAACATGTCTGGATCAGATTCTTTTTCCTCAGAATAAATTATGGCA CTCAGAAGCTACTCACAGATGCTTCTTCTATCCAGAATTGATTTTGGCTTTAGAATTAATTCTAGGGGCATTTCCAAACA TACACTTACTTATGTTGTCATTTTCATACATTGTCTTTTCAATTCAGGAAAGACACTGGTGAAAGATAGCTCTAATGATA TTGTACAAACATGAGCTTCGCTTTGTAAGTAAGCTCCTCAAATTTCACTTTCAATTTGTTAGAAATACATATATTTATGC CTTCTATTATAGTTGTAATGTTTGTGGAATTATAGTTTTGGTCTTTAAAGATATGGAGATTCAACCATGTAGTAGGGAGT TTTTTAATGGCTTTTAGAGGCAACTCTGGAGTAACACTCCTAACCACAAAGACTCTAATCGTTGCTGTTTTGGTTTGGAT TCTAAGTTTGTGGAACCTTACTATGCTGGATGTAGTGAACTCCTTTTCAAAGATGGGAAGACTAATAGTTTCATATGGGT AACACCATGGCAATATAATGACACAAAACCTATCATCTGAGATCACAAGAATAGGCTTAGGCTCACTCGAAAATGAAAGT AAGAAAATGGGTGATTTTATGCCTATTGTGATTTTGGTGGAGGGATAGGAGGTCCTCTGCAATGAAATTCTAGAACAGAG TTGTTAGAAGCTGTACTAAGAAACCTTAATTATGTGTTTGTAGCTTTCATTGTGCTCTCAATTGATTCATTCAAAACTAC CCACAATTTGTGAAGAAAGATCCATTTATAGAAAACAAACATGCACACATTTTAAATAGGTTGTTTTTTTACTAAAACGT GTGGAAATGATGTACAAGAATAATATTTAGACTTCTAATTCTTAATATATATCAAGTGAAGTTAAGGAATTACTGATCAT GAGATGGATTGTCACGAAACTTACTGTAATACAGAAAAATCAATTTGTTAAAAGTCCTTGTTCTTAATATTTGACCAATT GTACTTGCTTTCTGGAGGAAAAATAGTACTGTCACTAGTCTTAGGCTTGTAATCTACATTGTAGTCTCTATCTGCATTGG AAGTTGGAACCATATATTGCTGCATACAAGTTGCTGCATATAAGGGATCGTGTCTTGTTTGCAAATAAGGTAAATGGACT TCCATTCTGAGTTAAGTTAATTGCTGCATTTAAATTGGTTTTTAGTAGTAAGAAATAAGAATCTATCACTTTTTATTACC CCTGAGGCCATCTCGTACTGGTTAAGTTATTGCTATTATATTCATAGTAGTTTTTTAGTGGTTACTCTTTCTTTGTATAT TTTCAACTGTCTCTATAATATGTAAAGTAATGTTAATTGATTCTACTTTGTCTCCTTTTTGTTTTTAGCTTCATCAAATG GTGCTTGAATATCTGGTTTTCATTTGTTTTGGCTTTATGATAATGTTCGTGGATGTTTTCCCTAAAATTGGTAACTAGAA TCTTATCATATGCTGAATCATGACATGGCATCTGTTCAGGGTTTAACGGACTCTGATTTAATCAATTATGGCCCTAGGGC CTGATGAAGATTAAATCTTACTTAGTTTCTTTGAGTCTTGGCAGTACTAAGCTAGAATAGGGATTAAAGCTCGATTTCAG TTTAGCTGATACCTTAATCAAAGGCAGAGTCAAGTCTTTTAAAATATTGAAAAGCATTTCAGAACTAGTTCATACCATCC ATGTCCTATCTCTAGTACATGAATACTTCTTGCTCTAAAATTTGAATGTCTCTCTTTTTAACCAAAGAGTAACTTATTAT GGCTGAAAATCCCTAGCAATGGTTTTGCTTAGTAGTTCCCCTGCAATCATATATGTATATATATATATATGTGTGTGTAT TATTTTGAACAAAGTTTGAACCTGACTGTGTTTGGTATTTTAAAATGGTTGCAGTTAGCTGGCATACAACACACTTTTGG TCACTGGGAATCTAAGGAACCCTCATTGCACCTCCAAAGATAAATACATGGAGTCATTATTAAACCCTCATTGCTTCACT GCTTTCTCCTCAAGTTCTTTCCGATGCTAGGAACCTTATGTGGACACTTTGTGCAAGTGATAGGATGGGTTCTTGATTCA TTAGATTATTAGAGATAGTTTCTTGTTTTAATGATGATAGATTCAAAAGCAGAATTGCTACTGGATAAATTTCATGATCC CTATAGATGATCAAATTAAATTGTCATATTTTCACAATTCGTTAAAATTATTTTTTTACAGGGGATCAACCTAAAATGCC ATATTTTCCCAAATGTTATTCTGGTGATCACATATTTTGCTACAGATGTCATTATATTTTTGTTGTGAATTCTCACTAGG CACTAGGCGAAGGTAGAAAACATAACTAATAATAGAGAAAAATCTAGATTATCATTCAATATTAAGGTGTCTACAATACT CTTCCAATTACAACTTTATGCATCATAAGGAACTAGGCATTGGGTTGTCACAAGGTGACAATATTCTAGGCCCAAGGTTC TTTATTCTAGATCCTTCTACAGCTGAATATTAACTGGAATATAATTGAGACATAAACTTAAACTGTCTTATTTTAACCCC ATATAATCATTGTGCCATTTGGGACTAAGTCTCCTCCTTATATATCATCTTGGAAGTTTTGTAAAAAATCGGTCACAATT TGATATTGGGAACGGACAATCAATGAGTTGGACATTGGTATCGTAGCAGAATCGCACTTCCATTAAGAGATCTCTCCTAG TCGTGTCACAAGCAACTTCAGGCTGAACTTGATACTTTAACAAGAGATTTGTCACAATTTGTCCTGTTGCATAATTCATA TTGTAAATAGGCATCTTAAGTGTCACTGCGATGTTAGCCGTGCTCCAAAGGTTTAATGTTAGGTTCATAGCTGCTTGCAA ATAATCTCCTTGATGGAAATTGGAACCTAGCATGCATGTGCCATGCCTTTCAAACTCTCATCTCCAAAAAAATATCATCG TCCGACGAAAGCATGTAGGCCATAATTGTTCTTCAAATCCACAATCTGTGAGAACAAATATTATTAAGCAAGAATAGAAT TTACAAGAGTTTTTTTTA
CDS sequence (LotjaGi1g1v0790100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGAGCATATGAACATTCACATTGATCCAGATTTGATAACTGAAATACTGTTGAGATTGCCAGTAAAGTCTCTTAT GCGTTTCAAGGCTGTGTGCAAGCTTTGGCGCTCTCTGATTTCCGATCCCCATTTTGCAACATCACATTTTCAACGTGCTT CTCCTACACTCCTCTTCGCTAGTTGTGATGCCATTCGAACCATAGACTTTGAGGGTCCGCTTCACTATGATCATGTTTCT CAACCAATCAATTATCATTTAGTGTCGTCTACTCCTATTAAAATTGCAGGTTCATGGCTAATCAACTATAATAATAATCA TACTCTTTACCTGTGGAATCAATTATCATTTAGTGTCGTGACCACGTCTACTCTTATTGGAATTGCAGGTTCATGTAGAG GCTTTCTGCTAATCGAATATAATGATACTCTTTACGTGTGGAATCCATCCACACATGTCCACATATCAATACCACCTTCA TTTCCGGTTAATGTTGTTGACAGCGACACCGATGATGTTTTTACTCATCTATATGGATTTGGTTACCATTCCTCAAAAGA TGACTACTTGGTGGTTCAAGTGCCTGTTCCGTACAATTACGCAACTACTTATTTACCACATGTGCAGTTTTTCTCATTCA GAGCTAATATGTGGAAATATACTGAGGGTGTTGATTTGCCTCCCTTGAACTCTATTGACTGTAGTCACGGGTTGCTCTTC AACGAGGCCATTCACTGGGTGGCTCGAAACTGGGTGGATGGTATTACGACATATTTTATTATTGCCTTTGATTTAATGGA AAAGAGACTTCTAGAGATACCCCAGCCTCATGATTTTCTTGCCCATCGTTATTTGACTAATTTGTGGGTGCATGGAAGAT ATTTTAGTCTATCAGTTGAGCGGAGAGATTATACATGTGAAATATGGGTTATGAAGAAATACAAAGTACAGACATCTTGG ACCAAGACTGTTGTTCTATCTTTCGACAGCGTTGACTATCCAGTATGCTCTACAAAAGGTGGTGATATTGTTATGTTATC TGGAGATATACTGAAAAAGTATAGTGACGAAGGAGTAGTACAAGGAGAACAACTAGATTCTCAGAACGATTCTAGTTATT GTGGTTTTCTCAATCCATCAGCTCCCCTGTATACAGAGTCAATGCTTTCACTCCCTGATATTAGTGACTGA
Protein sequence (LotjaGi1g1v0790100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEHMNIHIDPDLITEILLRLPVKSLMRFKAVCKLWRSLISDPHFATSHFQRASPTLLFASCDAIRTIDFEGPLHYDHVS QPINYHLVSSTPIKIAGSWLINYNNNHTLYLWNQLSFSVVTTSTLIGIAGSCRGFLLIEYNDTLYVWNPSTHVHISIPPS FPVNVVDSDTDDVFTHLYGFGYHSSKDDYLVVQVPVPYNYATTYLPHVQFFSFRANMWKYTEGVDLPPLNSIDCSHGLLF NEAIHWVARNWVDGITTYFIIAFDLMEKRLLEIPQPHDFLAHRYLTNLWVHGRYFSLSVERRDYTCEIWVMKKYKVQTSW TKTVVLSFDSVDYPVCSTKGGDIVMLSGDILKKYSDEGVVQGEQLDSQNDSSYCGFLNPSAPLYTESMLSLPDISD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 386 | 382 | 1.5E-84 | – | |
| PANTHER | 5 | 386 | 382 | 1.5E-84 | – | |
| Gene3D | 8 | 45 | 38 | 2.8E-8 | – | |
| SMART | 9 | 48 | 40 | 2.3E-6 | ||
| Pfam | 11 | 45 | 35 | 1.3E-6 | ||
| SUPERFAMILY | 11 | 77 | 67 | 9.03E-15 | ||
| TIGRFAM | 131 | 351 | 221 | 5.6E-21 | ||
| Pfam | 238 | 330 | 93 | 1.8E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0790100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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