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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0790100 |
| Transcript ID | LotjaGi1g1v0790100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0790100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136202016..136206565) extracted from Lotus japonicus Gifu genome v1.2.
AGATTGAAACCATGCTTGAGCATATGAACATTCACATTGATCCAGATTTGATAACTGAAATACTGTTGAGATTGCCAGTA AAGTCTCTTATGCGTTTCAAGGCTGTGTGCAAGCTTTGGCGCTCTCTGATTTCCGATCCCCATTTTGCAACATCACATTT TCAACGTGCTTCTCCTACACTCCTCTTCGCTAGTTGTGATGCCATTCGAACCATAGACTTTGAGGGTCCGCTTCACTATG ATCATGTTTCTCAACCAATCAATTATCATTTAGTGTCGTCTACTCCTATTAAAATTGCAGGTTCATGGCTAATCAACTAT AATAATAATCATACTCTTTACCTGTGGAATCAATTATCATTTAGTGTCGTGACCACGTCTACTCTTATTGGAATTGCAGG TTCATGTAGAGGCTTTCTGCTAATCGAATATAATGATACTCTTTACGTGTGGAATCCATCCACACATGTCCACATATCAA TACCACCTTCATTTCCGGTTAATGTTGTTGACAGCGACACCGATGATGTTTTTACTCATCTATATGGATTTGGTTACCAT TCCTCAAAAGATGACTACTTGGTGGTTCAAGTGCCTGTTCCGTACAATTACGCAACTACTTATTTACCACATGTGCAGTT TTTCTCATTCAGAGCTAATATGTGGAAATATACTGAGGGTGTTGATTTGCCTCCCTTGAACTCTATTGACTGTAGTCACG GGTTGCTCTTCAACGAGGCCATTCACTGGGTGGCTCGAAACTGGGTGGATGGTATTACGACATATTTTATTATTGCCTTT GATTTAATGGAAAAGAGACTTCTAGAGATACCCCAGCCTCATGATTTTCTTGCCCATCGTTATTTGACTAATTTGTGGGT GCATGGAAGATATTTTAGTCTATCAGTTGAGCGGAGAGATTATACATGTGAAATATGGGTTATGAAGAAATACAAAGTAC AGACATCTTGGACCAAGACTGTTGTTCTATCTTTCGACAGCGTTGACTATCCAGTATGCTCTACAAAAGGTGGTGATATT GTTATGTTATCTGGAGATATACTGAAAAAGTATAGTGACGAAGGAGTAGTACAAGGAGAACAACTAGATTCTCAGAACGA TTCTAGTTATTGTGGTTTTCTCAATCCATCAGCTCCCCTGTATACAGAGTCAATGCTTTCACTCCCTGATATTAGTGACT GAAATCTCCACAAGAGCTTCGCTTTGTAAGTAAGCTCCTCAAATTTCACTTTCAATTTGTTAGAAATACATTTATTTATG CCTTCTATTATAGTTGTAATGTTTGTGGAGTTATAGTCTTCTTTAAAGATCTGGAGATTCAACCATTGTTGGGAGTTTTT TTAAGGCAACTCTAGACTAACACTCCTACCACAAAGACTCTAATCATTGCTGTTTTGGTTTCTAACTTTGTGGAACCTTA CTATGCTGGATGTAGTGAACTCCATTTCAAAGATGGAAAGACTAATAGTTTCATATGGGTAACACCATGGCAATATAATG ACACAAAACCTATCATTGATTACAAATCTGAGATCACAAGAATAGGTGTTAGAACCAGATGTTTTATTGATGATAAACCC TAATTCCCAAACTGAGAATCAGGGCAGAGTACAAGAGAAAGAGTCCACACTCAATCTCAAGAGAGTCCACACCCTCTTCC TAGGCCCCAAAACCCAAAATGAACTAAAAGATACCCCTAACTCTCTAATGTCTGTTATTTATAGGCTACATGCCTCAATG ACATTCTAACTAACTCACTAAGTATAACTAACTAACTAACTAACCCCTAACCTTGAGTTCCTATCAATAGGCTTAGGCTC ACTCGAAAATGAATGTAGGAAAATGGGTGATTTTATGCCTATTGTGATTTTGGTGGAGGGATAGGAGGTCCTCTGCAATG AAATTCTAGAACTGAGTTGTTAGAAGCTGTACTAAGAAACCGTAATTATGTGTTTGTAGCTTTTTGATTCATTCATAACT ACCCACAATTCGTGAAGAAAGATCCATTTATAGAAAACAAACATGCATACATTTTAAATAGGTTTTTTTTTTTACTGAAA CAAATCATCATCAATACCTTCTTCTCTATTAGGTTCATAATCATTTTCACTTTCAAACAAATCATCTGGATGTCAAAGAA GTCTCAGAAGGTGCAACAGTGTAAATTCAGAGATAGAAAATTCCATCCAGGGAGCAATTGCACACTGCAAGAATTCCCAG CAGATGTTCTCTTCAAAGGAGAATGCAAGTGATGTTGGACTCTACTCATTGCCTGAATTCAGAACCTCAGTTTGCGAGGA TCAAGAAAGAGTTGAGCCTTGTAGGGGTTGATAGCTTGGGAATAAAAACTAGCTTTCTAACATGTCTGGATCAGATTCTT TTTCCTCAGAATAAATTATGGCACTCAGAAGCTACTCACAGATGCTTCTTCTATCCAGAATTGATTTTGGCTTTAGAATT AATTCTAGGGGCATTTCCAAACATACACTTACTTATGTTGTCATTTTCATACATTGTCTTTTCAATTCAGGAAAGACACT GGTGAAAGATAGCTCTAATGATATTGTACAAACATGAGCTTCGCTTTGTAAGTAAGCTCCTCAAATTTCACTTTCAATTT GTTAGAAATACATATATTTATGCCTTCTATTATAGTTGTAATGTTTGTGGAATTATAGTTTTGGTCTTTAAAGATATGGA GATTCAACCATGTAGTAGGGAGTTTTTTAATGGCTTTTAGAGGCAACTCTGGAGTAACACTCCTAACCACAAAGACTCTA ATCGTTGCTGTTTTGGTTTGGATTCTAAGTTTGTGGAACCTTACTATGCTGGATGTAGTGAACTCCTTTTCAAAGATGGG AAGACTAATAGTTTCATATGGGTAACACCATGGCAATATAATGACACAAAACCTATCATCTGAGATCACAAGAATAGGCT TAGGCTCACTCGAAAATGAAAGTAAGAAAATGGGTGATTTTATGCCTATTGTGATTTTGGTGGAGGGATAGGAGGTCCTC TGCAATGAAATTCTAGAACAGAGTTGTTAGAAGCTGTACTAAGAAACCTTAATTATGTGTTTGTAGCTTTCATTGTGCTC TCAATTGATTCATTCAAAACTACCCACAATTTGTGAAGAAAGATCCATTTATAGAAAACAAACATGCACACATTTTAAAT AGGTTGTTTTTTTACTAAAACGTGTGGAAATGATGTACAAGAATAATATTTAGACTTCTAATTCTTAATATATATCAAGT GAAGTTAAGGAATTACTGATCATGAGATGGATTGTCACGAAACTTACTGTAATACAGAAAAATCAATTTGTTAAAAGTCC TTGTTCTTAATATTTGACCAATTGTACTTGCTTTCTGGAGGAAAAATAGTACTGTCACTAGTCTTAGGCTTGTAATCTAC ATTGTAGTCTCTATCTGCATTGGAAGTTGGAACCATATATTGCTGCATACAAGTTGCTGCATATAAGGGATCGTGTCTTG TTTGCAAATAAGGTAAATGGACTTCCATTCTGAGTTAAGTTAATTGCTGCATTTAAATTGGTTTTTAGTAGTAAGAAATA AGAATCTATCACTTTTTATTACCCCTGAGGCCATCTCGTACTGGTTAAGTTATTGCTATTATATTCATAGTAGTTTTTTA GTGGTTACTCTTTCTTTGTATATTTTCAACTGTCTCTATAATATGTAAAGTAATGTTAATTGATTCTACTTTGTCTCCTT TTTGTTTTTAGCTTCATCAAATGGTGCTTGAATATCTGGTTTTCATTTGTTTTGGCTTTATGATAATGTTCGTGGATGTT TTCCCTAAAATTGGTAACTAGAATCTTATCATATGCTGAATCATGACATGGCATCTGTTCAGGGTTTAACGGACTCTGAT TTAATCAATTATGGCCCTAGGGCCTGATGAAGATTAAATCTTACTTAGTTTCTTTGAGTCTTGGCAGTACTAAGCTAGAA TAGGGATTAAAGCTCGATTTCAGTTTAGCTGATACCTTAATCAAAGGCAGAGTCAAGTCTTTTAAAATATTGAAAAGCAT TTCAGAACTAGTTCATACCATCCATGTCCTATCTCTAGTACATGAATACTTCTTGCTCTAAAATTTGAATGTCTCTCTTT TTAACCAAAGAGTAACTTATTATGGCTGAAAATCCCTAGCAATGGTTTTGCTTAGTAGTTCCCCTGCAATCATATATGTA TATATATATATATGTGTGTGTATTATTTTGAACAAAGTTTGAACCTGACTGTGTTTGGTATTTTAAAATGGTTGCAGTTA GCTGGCATACAACACACTTTTGGTCACTGGGAATCTAAGGAACCCTCATTGCACCTCCAAAGATAAATACATGGAGTCAT TATTAAACCCTCATTGCTTCACTGCTTTCTCCTCAAGTTCTTTCCGATGCTAGGAACCTTATGTGGACACTTTGTGCAAG TGATAGGATGGGTTCTTGATTCATTAGATTATTAGAGATAGTTTCTTGTTTTAATGATGATAGATTCAAA
CDS sequence (LotjaGi1g1v0790100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGAGCATATGAACATTCACATTGATCCAGATTTGATAACTGAAATACTGTTGAGATTGCCAGTAAAGTCTCTTAT GCGTTTCAAGGCTGTGTGCAAGCTTTGGCGCTCTCTGATTTCCGATCCCCATTTTGCAACATCACATTTTCAACGTGCTT CTCCTACACTCCTCTTCGCTAGTTGTGATGCCATTCGAACCATAGACTTTGAGGGTCCGCTTCACTATGATCATGTTTCT CAACCAATCAATTATCATTTAGTGTCGTCTACTCCTATTAAAATTGCAGGTTCATGTAGAGGCTTTCTGCTAATCGAATA TAATGATACTCTTTACGTGTGGAATCCATCCACACATGTCCACATATCAATACCACCTTCATTTCCGGTTAATGTTGTTG ACAGCGACACCGATGATGTTTTTACTCATCTATATGGATTTGGTTACCATTCCTCAAAAGATGACTACTTGGTGGTTCAA GTGCCTGTTCCGTACAATTACGCAACTACTTATTTACCACATGTGCAGTTTTTCTCATTCAGAGCTAATATGTGGAAATA TACTGAGGGTGTTGATTTGCCTCCCTTGAACTCTATTGACTGTAGTCACGGGTTGCTCTTCAACGAGGCCATTCACTGGG TGGCTCGAAACTGGGTGGATGGTATTACGACATATTTTATTATTGCCTTTGATTTAATGGAAAAGAGACTTCTAGAGATA CCCCAGCCTCATGATTTTCTTGCCCATCGTTATTTGACTAATTTGTGGGTGCATGGAAGATATTTTAGTCTATCAGTTGA GCGGAGAGATTATACATGTGAAATATGGGTTATGAAGAAATACAAAGTACAGACATCTTGGACCAAGACTGTTGTTCTAT CTTTCGACAGCGTTGACTATCCAGTATGCTCTACAAAAGGTGGTGATATTGTTATGTTATCTGGAGATATACTGAAAAAG TATAGTGACGAAGGAGTAGTACAAGGAGAACAACTAGATTCTCAGAACGATTCTAGTTATTGTGGTTTTCTCAATCCATC AGCTCCCCTGTATACAGAGTCAATGCTTTCACTCCCTGATATTAGTGACTGA
Protein sequence (LotjaGi1g1v0790100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEHMNIHIDPDLITEILLRLPVKSLMRFKAVCKLWRSLISDPHFATSHFQRASPTLLFASCDAIRTIDFEGPLHYDHVS QPINYHLVSSTPIKIAGSCRGFLLIEYNDTLYVWNPSTHVHISIPPSFPVNVVDSDTDDVFTHLYGFGYHSSKDDYLVVQ VPVPYNYATTYLPHVQFFSFRANMWKYTEGVDLPPLNSIDCSHGLLFNEAIHWVARNWVDGITTYFIIAFDLMEKRLLEI PQPHDFLAHRYLTNLWVHGRYFSLSVERRDYTCEIWVMKKYKVQTSWTKTVVLSFDSVDYPVCSTKGGDIVMLSGDILKK YSDEGVVQGEQLDSQNDSSYCGFLNPSAPLYTESMLSLPDISD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 353 | 349 | 4.4E-87 | – | |
| PANTHER | 5 | 353 | 349 | 4.4E-87 | – | |
| Gene3D | 8 | 45 | 38 | 2.5E-8 | – | |
| SMART | 9 | 48 | 40 | 2.3E-6 | ||
| Pfam | 11 | 45 | 35 | 1.2E-6 | ||
| SUPERFAMILY | 11 | 77 | 67 | 1.07E-14 | ||
| TIGRFAM | 98 | 318 | 221 | 4.4E-21 | ||
| Pfam | 205 | 297 | 93 | 1.6E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0790100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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