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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0792700 |
| Transcript ID | LotjaGi1g1v0792700.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp|Q84JL3|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3; TrEMBL-Plants: tr|H8WVC3|H8WVC3_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi1g1v0792700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136433337..136436282) extracted from Lotus japonicus Gifu genome v1.2.
TTGTCTTCAAAATTACACAACACCACCATTCTCTTCTTGCTGCTGCTTGATTTATGATTCAGCTCAATCACACCCACAAT CCAAGATTATCCATTTATTAATTGTTTTTGCTGAGCAAAAATGGAATCAATTAGCATTGATAGCACTGTGACTATGATGG AAGAAGATGAGCATCCTCATCAGTTTTCTTCAACCTCCAAGCTACATAACATTGGTCCTGCCACCACCAGTGTTCATGAC CTTCTTGAATGCCCCGTTTGCACAAATTCGATGTACCCTCCAATCCATCAGGTCTGTTCTCTCATCCATTTTGCCTTTTA GGGTTTGGTTCCTCCAATTATGGTGTCAATATCTATTTACTTTTTTTTTTCCATAAATAGATGATTTTTATTAATGGGTA TGTCTAGAATTGATGTTGCATGATTCTGCTGATGTTGAATCCTGTGGATTTAGTTGCTGTGTTGGGTCTCTTTGGTAAAG AGAAATGGTTCTTGGCTAGCTGACTTTTTTACTTTTCTGGGGATCTGAGTTCATTCTTACCTATTGCCTTTTTTGCTTAT TTTGGTGAAGTTGTATTACTGATTCTGATTGATAGAATAGGAAAAAGTTTTAATATAAATCTATTTTCCCCATCAAGCCC TACAGAAGTTTACTTTATTGTTGTGATTTTTGGACTTAAATAAGGTATGGAGTGAAGACATATGCCTCTAAAAAACGCCG CCTAATTGTTTTGTTTATGTGAATGTTTTTACTAAGGTACCTTTGTAGATGGTGATTCACAAATAAGAAGGCAAGGTTAG AGGCATCAGTATATGTTGGCATATAACTTCTGATTATTCCTATCAAGAGCAAGGATTTCAATCAATGTTTGTTGGTCAAT GAAACAAACTTAGTTAAGTAACTTGTCAAGGCGATGGTTGTGAGAGGAGCCGATAGAGTGGCATTCTAAATAGGATTTTA GTAGATAAGAATGTTATAAAAGCTTGGTGACAAAAGAAACAAGGTTATAGTGAAAAGTGAATGGAATGGAAAAATAAAAG GATCCAATGTGTTATCTTTTACTTTTGCTGTGAGATCAGTTGTTACTTAATTCTGAATCTAACACATTGAAATCCCTTCA CTCATCATGAGTCTAAAGAGTAAAGACACATAGCTTGCTTTTATGTAAAAGTCTGAGATCCACCAAAGCTGGCCATTTCT TAAGTTCCATTATATGCTGAAGTTTATTTCACCAAGTGGTGGTGCATTTTTTCAGATTTTGACATTTTCGAATGAGGAAT ATTTTACCTATTGAGTAAATTGCTTTATCTGCATTGAAGCTTTCTGTTCTTTTGCTTGTGCAAGAATACAGGTAATTGGA TAGATTTGTTAATGAAGTTTGCAATACATTAACTGACTCTAGACCAATTTTATTCTGCAGTGTCACAATGGACACACCCT TTGTTCAACATGTAAGACAAGGGTGCACAACCGATGCCCAACTTGCAGGCAGGAGCTCGGTGATATCAGGTGTCTGGCAC TGGAGAAGATAGCAGAGTCACTGGAACTGCCTTGCAGATACATCTCTCTTGGGTGTCCAGAGATATTTCCCTACTACAGC AAGCTCAAACACGAGGCTGTTTGTAACTTCAGACCGTACAACTGCCCTTATGCCGGATCAGACTGCTCTGTTGTTGGTGA TATTCCATACCTTGTTGGTCATTTAAGGGATGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGTTATG TCAAGTCCAATCCCATGGAAGTAGAAAATGCTACATGGATGCTAACGGTAACTATGACTTCCCCCTCCCCCTGCCCCACA AAAACATAAATATCCTTCTGTAGGGTGGTTTGCTGTTATTGGAATGATATTGATATGATATTCATTGCTGCATCTGCAGC AAATATTTCTTCATTGCTATCTTTGTTCCAGCTATTACTTACATATAAGTATTGTTCACTCCAAAATTCTAGGGGTCAGA CTAAGCAATAGGTGGCCTTGCCTAACTACTCAGAATCAGTATTAGAGTGAAGATGCCTTTTCTCTTCTTTCTTTTCCTTC TTATAAGTCTTGTGACTATCCTTCAACAAGCGGTTCTTTAGTTATTTCATGCATTATTACACTGATTATTAGGTTATTAT TATATCATTAATTGTGTAATAAGTTGGTTAATGAATGGAGAGTTACTTCTTGTGTTCATGGCTTATCAATTTCTTACACA TTCATATACGAGATTGGCTTTGTGCATACTCTTATTGGCACTAGAATGAGGGCTTAAACCTCAGGCCAAGTTTAGATGCT AAATTAGTCGACATGTACACAACTCTCCAAGTCCTAAGCATCTTGCTTATTGTACTTGTTTTGTGATCCTCTCCCATCCA ACTGACTAGATGACCTCAGATCTTAGGCTGAGTTTAGTGCTAGATTGCTAAGATTACTCAAATATACAAGTACTAATAAT TATGTCACATTTTTTACATCTTATATATTGTTGTGTTACACATAGATATACATCTTCGAAATCTCATCCCATTTGTTATG GCTGACTCTAATATTTATGTCAGGTTTTCCATTGCTTTGGTCAGTATTTTTGCCTCCATTTTGAAGCCTTCCAGCTCGGT ACAGCTCCTGTTTACATGGCATTCCTTCGGTTCATGGGAGACGAAAGAGAGGCCCGGAACTACAGCTATAGCTTGGAGGT TGGAGGCAATGGACGTAAACTTACTTTTGAGGGGAGTCCAAGAAGCATTAGAGATAGCCATAAGAAAGTGAGAGACAGTC ATGATGGCCTCATCATATACCGTAACATGGCACTTTTCTTCTCAGGTGGGGACAGGAAAGAGTTGAAGTTACGAGTAACA GGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTTTGCATGCCCAACCTGTGTAGCTAG
CDS sequence (LotjaGi1g1v0792700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAAGAAGATGAGCATCCTCATCAGTTTTCTTCAACCTCCAAGCTACATAACATTGGTCCTGCCACCACCAGTGT TCATGACCTTCTTGAATGCCCCGTTTGCACAAATTCGATGTACCCTCCAATCCATCAGTGTCACAATGGACACACCCTTT GTTCAACATGTAAGACAAGGGTGCACAACCGATGCCCAACTTGCAGGCAGGAGCTCGGTGATATCAGGTGTCTGGCACTG GAGAAGATAGCAGAGTCACTGGAACTGCCTTGCAGATACATCTCTCTTGGGTGTCCAGAGATATTTCCCTACTACAGCAA GCTCAAACACGAGGCTGTTTGTAACTTCAGACCGTACAACTGCCCTTATGCCGGATCAGACTGCTCTGTTGTTGGTGATA TTCCATACCTTGTTGGTCATTTAAGGGATGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGTTATGTC AAGTCCAATCCCATGGAAGTAGAAAATGCTACATGGATGCTAACGGTTTTCCATTGCTTTGGTCAGTATTTTTGCCTCCA TTTTGAAGCCTTCCAGCTCGGTACAGCTCCTGTTTACATGGCATTCCTTCGGTTCATGGGAGACGAAAGAGAGGCCCGGA ACTACAGCTATAGCTTGGAGGTTGGAGGCAATGGACGTAAACTTACTTTTGAGGGGAGTCCAAGAAGCATTAGAGATAGC CATAAGAAAGTGAGAGACAGTCATGATGGCCTCATCATATACCGTAACATGGCACTTTTCTTCTCAGGTGGGGACAGGAA AGAGTTGAAGTTACGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTTTGCATGCCCAACCTGT GTAGCTAG
Protein sequence (LotjaGi1g1v0792700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEEDEHPHQFSSTSKLHNIGPATTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLAL EKIAESLELPCRYISLGCPEIFPYYSKLKHEAVCNFRPYNCPYAGSDCSVVGDIPYLVGHLRDDHRVDMHSGCTFNHRYV KSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGTAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDS HKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCMPNLCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Gene3D | 2 | 86 | 85 | 5.5E-7 | ||
| PANTHER | 16 | 285 | 270 | 3.1E-184 | – | |
| PANTHER | 16 | 285 | 270 | 3.1E-184 | – | |
| SUPERFAMILY | 19 | 72 | 54 | 2.56E-6 | – | |
| CDD | 31 | 69 | 39 | 2.63467E-14 | – | |
| ProSiteProfiles | 33 | 69 | 37 | 9.465 | ||
| Pfam | 75 | 274 | 200 | 7.6E-78 | ||
| SUPERFAMILY | 86 | 278 | 193 | 3.73E-48 | ||
| ProSiteProfiles | 86 | 146 | 61 | 14.237 | ||
| Gene3D | 87 | 141 | 55 | 5.6E-16 | ||
| CDD | 147 | 275 | 129 | 5.29127E-64 | – | |
| Gene3D | 159 | 275 | 117 | 1.9E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Biological process | Multicellular organism development | The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi1g1v0792700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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