Domain Predictions — View

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cd16571

Source: CDD

Description

RING-HC_SIAHs

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 18

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0278800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G58040.1 seven in absentia of Arabidopsis 2; Swiss-Prot: sp\|Q9M2P4\|SINA2_ARATH E3 ubiquitin-protein ligase SINAT2; TrEMBL-Plants: tr\|H8WVC4\|H8WVC4_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi1g1v0278800	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF79 SSF49599 SSF57850 cd16571 mobidb-lite	16
LotjaGi1g1v0278800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G58040.1 seven in absentia of Arabidopsis 2; Swiss-Prot: sp\|Q9M2P4\|SINA2_ARATH E3 ubiquitin-protein ligase SINAT2; TrEMBL-Plants: tr\|H8WVC4\|H8WVC4_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi1g1v0278800	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF79 SSF49599 SSF57850 cd16571 mobidb-lite	16
LotjaGi1g1v0278800.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G58040.1 seven in absentia of Arabidopsis 2; Swiss-Prot: sp\|Q9M2P4\|SINA2_ARATH E3 ubiquitin-protein ligase SINAT2; TrEMBL-Plants: tr\|H8WVC4\|H8WVC4_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi1g1v0278800	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF79 SSF49599 SSF57850 cd16571 mobidb-lite	16
LotjaGi1g1v0285800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp\|Q84JL3\|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3; TrEMBL-Plants: tr\|H8WVC6\|H8WVC6_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi1g1v0285800	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF113 SSF49599 SSF57850 cd03829 cd16571 mobidb-lite	17
LotjaGi1g1v0792700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp\|Q84JL3\|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3; TrEMBL-Plants: tr\|H8WVC3\|H8WVC3_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi1g1v0792700	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF113 SSF49599 SSF57850 cd03829 cd16571	16
LotjaGi1g1v0792700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp\|Q84JL3\|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3; TrEMBL-Plants: tr\|H8WVC3\|H8WVC3_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi1g1v0792700	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF42 SSF49599 SSF57850 cd03829 cd16571 mobidb-lite	17
LotjaGi1g1v0792700.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp\|Q84JL3\|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3; TrEMBL-Plants: tr\|H8WVC3\|H8WVC3_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi1g1v0792700	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF42 SSF49599 SSF57850 cd03829 cd16571 mobidb-lite	17
LotjaGi1g1v0792700.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp\|Q84JL3\|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3; TrEMBL-Plants: tr\|H8WVC3\|H8WVC3_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi1g1v0792700	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF42 SSF49599 SSF57850 cd03829 cd16571 mobidb-lite	17
LotjaGi3g1v0112100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp\|Q8S3N1\|SINA5_ARATH E3 ubiquitin-protein ligase SINAT5; TrEMBL-Plants: tr\|A0A0L9UHM7\|A0A0L9UHM7_PHAAN E3 ubiquitin-protein ligase; Found in the gene: LotjaGi3g1v0112100	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF111 SSF49599 SSF57850 cd03829 cd16571	16
LotjaGi3g1v0112100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp\|Q8S3N1\|SINA5_ARATH E3 ubiquitin-protein ligase SINAT5; TrEMBL-Plants: tr\|A0A0L9UHM7\|A0A0L9UHM7_PHAAN E3 ubiquitin-protein ligase; Found in the gene: LotjaGi3g1v0112100	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF111 SSF49599 SSF57850 cd03829 cd16571	16
LotjaGi3g1v0320300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp\|Q84JL3\|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3; TrEMBL-Plants: tr\|H8WVC5\|H8WVC5_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi3g1v0320300	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF111 SSF49599 SSF57850 cd03829 cd16571 mobidb-lite	17
LotjaGi3g1v0320300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp\|Q84JL3\|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3; TrEMBL-Plants: tr\|H8WVC5\|H8WVC5_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi3g1v0320300	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF111 SSF49599 SSF57850 cd03829 cd16571 mobidb-lite	17
LotjaGi3g1v0320300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp\|Q84JL3\|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3; TrEMBL-Plants: tr\|H8WVC5\|H8WVC5_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi3g1v0320300	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF111 SSF49599 SSF57850 cd03829 cd16571	16
LotjaGi3g1v0320300.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp\|Q84JL3\|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3; TrEMBL-Plants: tr\|H8WVC5\|H8WVC5_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi3g1v0320300	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF111 SSF49599 SSF57850 cd03829 cd16571 mobidb-lite	17
LotjaGi3g1v0396300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp\|Q84JL3\|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3; TrEMBL-Plants: tr\|A0A1J7GW29\|A0A1J7GW29_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0396300	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF42 SSF49599 SSF57850 cd16571	15
LotjaGi3g1v0396300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp\|Q84JL3\|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3; TrEMBL-Plants: tr\|A0A1J7GW29\|A0A1J7GW29_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0396300	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF42 SSF49599 SSF57850 cd16571	15
LotjaGi5g1v0117000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G58040.1 seven in absentia of Arabidopsis 2; Swiss-Prot: sp\|Q9M2P4\|SINA2_ARATH E3 ubiquitin-protein ligase SINAT2; TrEMBL-Plants: tr\|H8WVC7\|H8WVC7_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi5g1v0117000	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF79 SSF49599 cd16571	14
LotjaGi5g1v0117000.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT3G58040.1 seven in absentia of Arabidopsis 2; Swiss-Prot: sp\|Q9M2P4\|SINA2_ARATH E3 ubiquitin-protein ligase SINAT2; TrEMBL-Plants: tr\|H8WVC7\|H8WVC7_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi5g1v0117000	Domains G3DSA:2.60.210.10 G3DSA:3.30.40.10 IPR001841 IPR008974 IPR013010 IPR013083 IPR018121 PF03145 PS50089 PS51081 PTHR10315 PTHR10315:SF79 SSF49599 cd16571	14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd16571	CDD	1	5.56