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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0794300 |
| Transcript ID | LotjaGi1g1v0794300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT3G13540.1 myb domain protein 5; Swiss-Prot: sp|Q38850|MYB5_ARATH Transcription repressor MYB5; TrEMBL-Plants: tr|A0A0B2Q9E9|A0A0B2Q9E9_GLYSO Transcription repressor MYB4; Found in the gene: LotjaGi1g1v0794300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136546626..136548292) extracted from Lotus japonicus Gifu genome v1.2.
TGAGGTAGAGGATCTTCACCGTATATACCCACCCTTTGATTTTGTAGTAGTGTTCAAAAGATGGGAAGAGCTCCTTGTTG TTCTAAAGTTGGGCTACACAGAGGTCCATGGCTTCCTCGTGGAGATGCACTTCTCACCAAATATATATATTCGAGATCAT GGAGAAGGACAGTGGAGATCATTACCAAAAAGAGCTGGTAACACTTCATTATCACATTCATTATCTTTTCTGATTGATCT CTCATATTCTGTTCTTGGTTTGTTTACCCTTCTAAATTACACATGCATTATTCATTCATGACACTACTTCTTTTTTCCCT CAGATCTTCTGTATTATTGTTGTTTTCCATCAAAATTTGGTTATGTGATAAGTTAATTAATTTGTAAAGGGCTATGTGGT TTGTTTCTTTTACTCTTGTTCTTTGTTACACCATTACACAAAAACACATATTTGATAGTCATAGAACATTGGTCATGGAA GTTCTAGCAGCATGCATAGCATGAAAAGTATCGCAAAAGCTTAAAATGCTGAATGAAAATACATAAATAGTTTATGTTAT ATTTTTCTAAGAATTATAACATGAAAATAACATTTTAATTTATGTTGTTTTCCACCTTCAATCATTTGAGTTAACTCCAC TTTGTGCTCATTTGATTTAGTTTTGTCTTTTAAGTTAATTTGTCTTTTTAGATAAAGTAAATATTATTAAGTTGGTGCTG GGTGCAGGGCTTCTAAGATGCGGAAAGAGTTGCAGATTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGTAA CATAACTCCTGATGAAGATGACCTTATAATCAGAATGCATTCTCTTCTTGGAAATAGATGGTCACTCATTGCAGGAAGAA TACCCGGGCGAACAGATAATGAGATAAAGAACTACTGGAATACCCACCTCTGCAAAAAGCTCAGAAATCAAGGTACAGAT CCAAACACGCACAAGAAGCTACCAGATGATCCTGCTAAAGAGTCAGATAAGAAGAAGAAGAAGAGAAGTGACAAGAGGAA GAAGAAGAAGAAGAGAGCAGAGGCAGAGGCAGAGAAGAAAAGAGAAGAGTCAGAGTCAGAGAGAAACAGAGCAGAGTCAG AGAAGAAGATCTTAGTTTATCTACCAAAACCCACAAGGGTAACATCTCTATCCTCCATTCCCAGAACGGATAGCACATTG ACATTGAATTCCATTAATTCATTCAGTGCTGCAGCATCAACAAGCAAAGAGAAAGAAAAAGAGGTGAACTTGGAGGGAGA AAATAAAAATGATGATAATGGGTTTGGATTCTTTGGTGAAATGGAATGCTCCTCTGTTATTCCAGATCATGGGACACTTG AGAAGGTGTATGAAGAGTACTTGCAGCTCTTGAAGGTTGAAGAGAACCATGATGATGATTTAGATTCTTTTGCTGAATCG TTGTTAGCGTAAATGTACCAATTAAGTTAGCTAATTAATGATGGTAAAAATTATTAATGTTGGGGTAAATAAAATAAGTT CTGCTGGCTCTGGCATCAGCATGTGAATGAATAAAGGTCTCAATCTTTTACCAACATTTTAGGAAATAAACTATAGTACC AAACTACCAATGGATCGGAAAATGTTTGTACTTTGAAGCTTAGCTTCTCACGCACTTACCTTCCAGC
CDS sequence (LotjaGi1g1v0794300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACTTCTCACCAAATATATATATTCGAGATCATGGAGAAGGACAGTGGAGATCATTACCAAAAAGAGCTGGGCTTCT AAGATGCGGAAAGAGTTGCAGATTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGTAACATAACTCCTGATG AAGATGACCTTATAATCAGAATGCATTCTCTTCTTGGAAATAGATGGTCACTCATTGCAGGAAGAATACCCGGGCGAACA GATAATGAGATAAAGAACTACTGGAATACCCACCTCTGCAAAAAGCTCAGAAATCAAGGTACAGATCCAAACACGCACAA GAAGCTACCAGATGATCCTGCTAAAGAGTCAGATAAGAAGAAGAAGAAGAGAAGTGACAAGAGGAAGAAGAAGAAGAAGA GAGCAGAGGCAGAGGCAGAGAAGAAAAGAGAAGAGTCAGAGTCAGAGAGAAACAGAGCAGAGTCAGAGAAGAAGATCTTA GTTTATCTACCAAAACCCACAAGGGTAACATCTCTATCCTCCATTCCCAGAACGGATAGCACATTGACATTGAATTCCAT TAATTCATTCAGTGCTGCAGCATCAACAAGCAAAGAGAAAGAAAAAGAGGTGAACTTGGAGGGAGAAAATAAAAATGATG ATAATGGGTTTGGATTCTTTGGTGAAATGGAATGCTCCTCTGTTATTCCAGATCATGGGACACTTGAGAAGGTGTATGAA GAGTACTTGCAGCTCTTGAAGGTTGAAGAGAACCATGATGATGATTTAGATTCTTTTGCTGAATCGTTGTTAGCGTAA
Protein sequence (LotjaGi1g1v0794300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHFSPNIYIRDHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRMHSLLGNRWSLIAGRIPGRT DNEIKNYWNTHLCKKLRNQGTDPNTHKKLPDDPAKESDKKKKKRSDKRKKKKKRAEAEAEKKREESESERNRAESEKKIL VYLPKPTRVTSLSSIPRTDSTLTLNSINSFSAAASTSKEKEKEVNLEGENKNDDNGFGFFGEMECSSVIPDHGTLEKVYE EYLQLLKVEENHDDDLDSFAESLLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 47 | 42 | 4.0E-9 | – | |
| PANTHER | 8 | 217 | 210 | 5.9E-77 | – | |
| ProSiteProfiles | 8 | 41 | 34 | 6.876 | ||
| PANTHER | 8 | 217 | 210 | 5.9E-77 | ||
| SUPERFAMILY | 8 | 88 | 81 | 2.33E-21 | ||
| CDD | 8 | 41 | 34 | 1.64547E-4 | ||
| SMART | 8 | 43 | 36 | 20.0 | ||
| Pfam | 9 | 41 | 33 | 2.4E-6 | ||
| ProSiteProfiles | 42 | 96 | 55 | 24.994 | ||
| SMART | 46 | 94 | 49 | 4.4E-14 | ||
| Pfam | 47 | 92 | 46 | 9.3E-14 | ||
| CDD | 51 | 92 | 42 | 5.50142E-12 | ||
| Gene3D | 51 | 96 | 46 | 4.4E-19 | – | |
| MobiDBLite | 96 | 154 | 59 | - | – | |
| MobiDBLite | 100 | 120 | 21 | - | – | |
| Coils | 120 | 156 | 37 | - | – | |
| MobiDBLite | 121 | 136 | 16 | - | – | |
| MobiDBLite | 137 | 154 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0794300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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