Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0795000 |
| Transcript ID | LotjaGi1g1v0795000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein, expressed; TAIR: AT1G01200.1 RAB GTPase homolog A3; Swiss-Prot: sp|Q9LNK1|RABA3_ARATH Ras-related protein RABA3; TrEMBL-Plants: tr|Q40192|Q40192_LOTJA RAB11B; Found in the gene: LotjaGi1g1v0795000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136589533..136595020) extracted from Lotus japonicus Gifu genome v1.2.
TGTTGAGCCCCATAATTAATAGTTTTTTTTGGGTTAAAATATATAACCGTCCCTGAACTTTGAGCGAAATCTGAAAACTG TCCCTCGCCGGAAAATTATCTGAAATTCGTCCTCGTACTATCAAAAACAAATTTGACCCATCCCTCCGGCCGCCTTAGCT CCGGCAAGAGCCATTTTTTATTTTTACCCATCCCTAAACTTTGATCGAAATCTGAAAACCGTCCCTTTTATATTTTTATT TTTATTTTTATAAATTAAAATTCCTTAATTTCTAAGAATTAAATCTAATACCCTTTAATCTAAGCCCGAATTCCCAATTT AAGCATAAATCCCTTAATCTAACCCTAACTCATCCCAATTTAACCACAATTCTCAAGTTCTCTCTCCTTCAGATCTTGTT TCTCTTCTCTTCTTCTTTCTTCATCTTCATCTTCATCTCATTTCCTCCACCAACAACAACATCGTCTTCTTCTTGTTGTT GTTAGAAAAAATTTGCAATTTTAATTCTTAGAAATTAGGGAATTTTCAGATTTCGCTCAAAGTTCAGATTTCAAATTAGG GAATTTTAATTCTTAAAACTTAGGGAATTTTAATTCTTAAAAATTAGGGAATTTTAATTTTAAAAAATAAAAATAAAAAA GGGACGGTTTTCAGACTTCGCTCAAAGTTCAGGGATGGGTAAAAATAAAAAAAGGGCTCTTGCCGGAGCTAAGGCGGCCG GAGGGATGAGTCAAATTTGTTTTTGATAGTACGAGGACGAATTTCAGATAATTTTCCGGCGAGAGACGGTTTTCAGATTT CGTTCAAAGTTCAGGGACTGTTATATATTTTAACCTTTTTTTTCTTTAGTTGCACTTTTAGTCGTCTCTAATATCACGAT TATGTGAATTAAGCTCTTGTGTTTTAAAATAAGTGATTGTGATGACAAGGTTTATTTGACATTGCACTTTTGATTATTTT CTTACTTCTTCATCCAAATTTGCTGAATAGTAGCACGGGCCTTGCAGCACTTCACTACTATTACAGATTAATTACTAGGA AGAAACCTAAAAAAAAACAAAATTACTAGGAAGAATTGATGATTGTGGCCGGAGAGTGTTATCTGTACAACACCAGCGCT GTCGGTGCTGATTGAAAACACCAAGCTGTGTGGTGTGTGCTATACTGATTACTCTGTCAATGCATTGGATATAAAGAATG TCTTCTTTTTATTAGCCTCCTCCTGAGTGACTCATATATGTATGGAATGGTCCTCATTGCAATGGTCCACTTGGGTTTAA TACAAATCCTTTCATGCTGGAACAAATGGTAGGCCATGCTCATGCTGCACCAAATGCTCTTTTCCAACAAAATCATAAAT GTAGGGGATCAAATAGATTATATTTTAATCTTTGAATCTATTGGTTCTTCTGAACCTCAGTAATTGAGGATATATTCATC ATGATACCAGTAAGACAACTAAAAAAACTCAGACAAGTATGCTATCCAAATTAGAAAAGAATATGTAAATATTAGGAACT TGTCCATGAGCCGTTTCACCAATGTTAGAGGGCACCGCTTTGCGCTATTGTATTAATATATATTTTTATACATATATATA TATATATATATATTAATATCATAGTATAATCCATTTTCCCTTTTTTTTCTTCCTCTTATTTCTACTCTCACTTAACTCAA CCAAACAATGCCTTAATAATGCACACAAGCTCTTTAAGAAGCCCTTCAGTAACTATTACAATTTAGAGAGCCATTTGAAA ATTCACAATTCTCCATAGATCACAAAATCACATCAATCTCTGTATCCTTTCTTTCTTCTTTTTTGGGTTAGTAAAAGAAT TGAACCTTATATTGATGGCCTTCATTATTATGTGGTCAGTTGTGGAAGGCAATAATGTCATGTAAACAATATATTTGATG TAGTACACCTAATTCAGCAAAGCATTAAAGTGGGACAGAGACTGGGCCACTTTCCTTACCTATTTCATTTTTTTGCCAAC ATCAATTCAATTCAACACTGGTCTTGTTTGATTCATCTTTTCAAGCTTTTCCATGTTCCTACACTTTCTCTTATTTACGA ACTGTGTCTTTTGATTGCTGGTGTTGCCGTGTGGGAAGAAAATGAATCAGGAAATGAATGGGGTTGAGGCTGAGAAGCTG CACCTGCAAGAGAAGAATGTGCATGATAAAATAGATTATGTGTTTAAGGTGGTGGTGATTGGGGACTCAGCTGTGGGCAA GACTCAAATACTCTCAAGGTTTGCAAAGAATGAATTCTGCTTTGATTCAAAAGCTACCATTGGGGTTGAGTTTCAGACCA GAACTGTCACAATTAATGCCAAAGTCATCAAAGCCCAGATCTGGGACACTGCTGGTCAAGAAAGGTTCACCAACTCCCCT CTCTCTCTCTCTATCTCCATTGATATCCCTATTAGATTTATATATAACATCATCATGTGAATTTTTGATATGAAAGATCA TAATCTATTTGATTTGCTTGTCCATCCCCTGAATAAGAGAGAGCATCCTCTTTTCCAAAAAAAAGAGAGCATCCTATTAA TATCTCATATTCAGTTGAAATATGAAATATGACAAATAAGTATTTGTAAATGGTACACAACCTTCACTTTGAAGTTAGTT TTTGGGATAAAATTATACCTAACTCAATTTCTAAAATGATATTAGAGTTTATTATAAATTTGTTTATTGTAACAACCTAT ATATGAAGCACTGACAATCAAAAGTTTATTCTGCAAATCTCACAATTCAAATGGAGTAAGGCATAACCTAAATTTAAATG GGGATCGTGGCAGCAATGTCACTTTGACACTAGTGACTTAAATTCTAATATTAGTAACTTTTTTGTTCTGAAATTTAACA TTAGTAACTTGAATAATATTAGAATTTAACATTATAAATCTGAACTCTATTCTGTTGGTGATGCAGGTACAGGGCTGTGA CAAGTGCATACTACAGAGGAGCATTAGGAGCAATGCTGGTGTATGACATAACAAAAAGACAGTCTTTTGATCATGTGGCT AGGTGGGTTGAGGAGCTGCGAGCACACGCAGACAGCTCCATTGTGATCATGCTAATTGGGAACAAAGGTGATCTTGTGGA TCAAAGAGTGGTGCTCTCTGAAGATGCAGTTGAGTTTGCAGAGGAACAAGGCCTTTTCTTCTCTGAGACTTCAGCTCTCA CTGGTGAGAACGTGGAGAGTGCGTTTCTCAAGTTACTTCAAGAGATCAATACTAGAGTTGTCTCAAAAAGGTCTTTGTCA GATTGTAATCATGGGAAGAAGACCAATGGTGGCAATAGCCTTAAAGGATCCAAAATTGATGTAATCTCTGGTCCTGAATT GGAAATTACTGAAGTGAAGAAAGTACCTTCATGTTCTTGTTCATCTAGTTAAGAGAGCAGGGTGAGAAATTTACACACAG TATTTTTTTTTTCTTTTGAAAAGAATTGTGCTTAGTTTAGTTATCAATACGGGGATGATGATTTTGTCTGGTCCATGTTG TCAATGCTCAAAATTGAAGAGCACTTCTTGCTTTAGTTTCATTATTATGACTTATTTACAACAATGAATTTGATATAATG TTTTCACCTATTCAATAAAATGGCTATTTAAATCACTCATGAATATTTACTTAACCTAAATCAAGTTTGATTCTTCACAA ATTATATAATTTTATTTACCTAATGTGTCTAAATGATATAATACAAATTTGGGTTTGAATCATCTTAATATGCGGACCAA TGATATTTATGATAAGTGATCGTCATTTGTCTTAAATATTATTAGTTCACCAATTAGAGTAATTTAATCCAAACTTTACC TAATTTTTTTAAACAACTCCTTGCTTAATTAGTTGTAGCCTCAATACAATAGACATGTTGAAGAATTTTGGCTTAATTGC ACATTTAGTCCACCAACTTTGCCCTTCCTGTGAAAATCATCCCCCAACTAAGAATTTAGCAAAAACCGTCCTTTTAGGGG ATGATTTTCGCACGAAGACAACGGTGGGGTGTAAACTTTCGGGACGATTTTTACTAATTTCATAATTGGGGGACGATTTT TGCAGGAAGGCAAAGTTGGGGGACCAAATGTTCAATTAAGCCAAGAATTTTCACAAAACATGGGACTTAGAGTTCAAGCA ACCAAATGTTTAGTCATATTTAAGTCAATGTAGTATTTTCTTCCTTAAATATGAGCATACATACTCTAATACGGCCATAC GTGTGCATGAGACTTAGTTGGAATCCCTTACATCAAAATATCAAAATATATATGACTCGTTTGGTTGTTAGGATAAGATA AAAGCAGAATATGATAAATGATTGAATAAGAACATGATATGTCAGACTCTTATCATATCCTGTGTTTGAGGTGAACAAGA TATTGATAGGATATGATAGAAACAATGAAAAATAAATCAAAATTTCATTTGAAATAAAAAATTCATAATATTGATAAGTT GATATCCTATCCTAGGATAATTTCTATCATAACTCCCCCTCAGGATAACTTTTACACATGATAGACAAGATAGCATACGA GACATGATAGTGTTATCCTATCATGTTGATGCAACAAACAACATATTACAGCAGGATAGGATTACTGACTGTTTATCATG TCCACCAAATAGGCCCATAACGAGCAATGATATATACACACCTCATTTTTTAAACACTTCATTTCCACCTCTTTTTATTT CTCTCTCTCATTTTATCATCTATCACATCTCATATTTTCTCTCTCATACTTTTTATTTTCTTTCTATCTCTCTCACCATT CCACCTCTCCACCTCAAAAGAGAGGTGTGGATGAAACATTACTCCGTCATAATCTTCTATAGACCGTAAGTTAATGCTCT TGGTGGAAAATAAAATATGTGTGATTAAAAAAATAGTATATTTTCTATTCAGTCAATCATGTGATTAAAAACAGTACTTT TATGGGCTGCTCTCCCTTCCAAGTTTTGTTTTTTTTCAATAAATCAAGAAGTTAATAATTATTATTTTTTGAAAAACTGC TTTTATTTACCGGTCAATTACTAATCGTTTAAATTTTTTAAAGAATATATTAATTAAGCACAATGGGTGCTAACCCATAT GCAAAGAATATATTGATCGTTTAAATGACAACAACAACCCCGCTGGGGGTGATGCTGAAATTTGCTTCCAGTTCATTATA TTATTAGGCATTAGCTATTGTAATTAATTGAAATAAAAAAGTGTCGGCACTGAGAAACCTAGTTAGACTAAAAGGCTTAC CTTACCTGCTCCCTGGTTTCCATTTGAAATCACTGTGTAAAGTCTACTACAATCACTACGTTTGGTGGGGGAAAACACAT ACCCAACTAAATCAAATAAATAGATGTGACTCAAAATTCTATACAATGTGTTTGGCTGGTATATTGAGCATCTAACTAAA AATGCTTGAAGTTTGAGCAATATAATGCTTAAAATATGAAAAGGGAAG
CDS sequence (LotjaGi1g1v0795000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCAGGAAATGAATGGGGTTGAGGCTGAGAAGCTGCACCTGCAAGAGAAGAATGTGCATGATAAAATAGATTATGT GTTTAAGGTGGTGGTGATTGGGGACTCAGCTGTGGGCAAGACTCAAATACTCTCAAGGTTTGCAAAGAATGAATTCTGCT TTGATTCAAAAGCTACCATTGGGGTTGAGTTTCAGACCAGAACTGTCACAATTAATGCCAAAGTCATCAAAGCCCAGATC TGGGACACTGCTGGTCAAGAAAGGTACAGGGCTGTGACAAGTGCATACTACAGAGGAGCATTAGGAGCAATGCTGGTGTA TGACATAACAAAAAGACAGTCTTTTGATCATGTGGCTAGGTGGGTTGAGGAGCTGCGAGCACACGCAGACAGCTCCATTG TGATCATGCTAATTGGGAACAAAGGTGATCTTGTGGATCAAAGAGTGGTGCTCTCTGAAGATGCAGTTGAGTTTGCAGAG GAACAAGGCCTTTTCTTCTCTGAGACTTCAGCTCTCACTGGTGAGAACGTGGAGAGTGCGTTTCTCAAGTTACTTCAAGA GATCAATACTAGAGTTGTCTCAAAAAGGTCTTTGTCAGATTGTAATCATGGGAAGAAGACCAATGGTGGCAATAGCCTTA AAGGATCCAAAATTGATGTAATCTCTGGTCCTGAATTGGAAATTACTGAAGTGAAGAAAGTACCTTCATGTTCTTGTTCA TCTAGTTAA
Protein sequence (LotjaGi1g1v0795000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNQEMNGVEAEKLHLQEKNVHDKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKATIGVEFQTRTVTINAKVIKAQI WDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVARWVEELRAHADSSIVIMLIGNKGDLVDQRVVLSEDAVEFAE EQGLFFSETSALTGENVESAFLKLLQEINTRVVSKRSLSDCNHGKKTNGGNSLKGSKIDVISGPELEITEVKKVPSCSCS SS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 13 | 192 | 180 | 0.0076 | – | |
| PANTHER | 17 | 237 | 221 | 5.3E-111 | – | |
| PANTHER | 17 | 237 | 221 | 5.3E-111 | – | |
| Gene3D | 20 | 217 | 198 | 1.4E-63 | – | |
| ProSiteProfiles | 23 | 237 | 215 | 34.525 | – | |
| SUPERFAMILY | 24 | 193 | 170 | 1.97E-57 | ||
| SMART | 25 | 191 | 167 | 2.9E-25 | – | |
| CDD | 25 | 188 | 164 | 2.42109E-114 | – | |
| TIGRFAM | 27 | 181 | 155 | 4.2E-34 | ||
| PRINTS | 28 | 49 | 22 | 3.2E-38 | – | |
| SMART | 28 | 191 | 164 | 3.2E-99 | – | |
| Pfam | 29 | 189 | 161 | 2.7E-58 | ||
| SMART | 30 | 187 | 158 | 2.0E-11 | – | |
| SMART | 33 | 234 | 202 | 3.5E-7 | – | |
| PRINTS | 51 | 67 | 17 | 3.2E-38 | – | |
| PRINTS | 69 | 91 | 23 | 3.2E-38 | – | |
| PRINTS | 131 | 144 | 14 | 3.2E-38 | – | |
| PRINTS | 166 | 188 | 23 | 3.2E-38 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi1g1v0795000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…