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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0795000 |
| Transcript ID | LotjaGi1g1v0795000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein, expressed; TAIR: AT1G01200.1 RAB GTPase homolog A3; Swiss-Prot: sp|Q9LNK1|RABA3_ARATH Ras-related protein RABA3; TrEMBL-Plants: tr|Q40192|Q40192_LOTJA RAB11B; Found in the gene: LotjaGi1g1v0795000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136591287..136593641) extracted from Lotus japonicus Gifu genome v1.2.
TTGAAAATTCACAATTCTCCATAGATCACAAAATCACATCAATCTCTGTATCCTTTCTTTCTTCTTTTTTGGGTTAGTAA AAGAATTGAACCTTATATTGATGGCCTTCATTATTATGTGGTCAGTTGTGGAAGGCAATAATGTCATGTAAACAATATAT TTGATGTAGTACACCTAATTCAGCAAAGCATTAAAGTGGGACAGAGACTGGGCCACTTTCCTTACCTATTTCATTTTTTT GCCAACATCAATTCAATTCAACACTGGTCTTGTTTGATTCATCTTTTCAAGCTTTTCCATGTTCCTACACTTTCTCTTAT TTACGAACTGTGTCTTTTGATTGCTGGTGTTGCCGTGTGGGAAGAAAATGAATCAGGAAATGAATGGGGTTGAGGCTGAG AAGCTGCACCTGCAAGAGAAGAATGTGCATGATAAAATAGATTATGTGTTTAAGGTGGTGGTGATTGGGGACTCAGCTGT GGGCAAGACTCAAATACTCTCAAGGTTTGCAAAGAATGAATTCTGCTTTGATTCAAAAGCTACCATTGGGGTTGAGTTTC AGACCAGAACTGTCACAATTAATGCCAAAGTCATCAAAGCCCAGATCTGGGACACTGCTGGTCAAGAAAGGTTCACCAAC TCCCCTCTCTCTCTCTCTATCTCCATTGATATCCCTATTAGATTTATATATAACATCATCATGTGAATTTTTGATATGAA AGATCATAATCTATTTGATTTGCTTGTCCATCCCCTGAATAAGAGAGAGCATCCTCTTTTCCAAAAAAAAGAGAGCATCC TATTAATATCTCATATTCAGTTGAAATATGAAATATGACAAATAAGTATTTGTAAATGGTACACAACCTTCACTTTGAAG TTAGTTTTTGGGATAAAATTATACCTAACTCAATTTCTAAAATGATATTAGAGTTTATTATAAATTTGTTTATTGTAACA ACCTATATATGAAGCACTGACAATCAAAAGTTTATTCTGCAAATCTCACAATTCAAATGGAGTAAGGCATAACCTAAATT TAAATGGGGATCGTGGCAGCAATGTCACTTTGACACTAGTGACTTAAATTCTAATATTAGTAACTTTTTTGTTCTGAAAT TTAACATTAGTAACTTGAATAATATTAGAATTTAACATTATAAATCTGAACTCTATTCTGTTGGTGATGCAGGTACAGGG CTGTGACAAGTGCATACTACAGAGGAGCATTAGGAGCAATGCTGGTGTATGACATAACAAAAAGACAGTCTTTTGATCAT GTGGCTAGGTGGGTTGAGGAGCTGCGAGCACACGCAGACAGCTCCATTGTGATCATGCTAATTGGGAACAAAGGTGATCT TGTGGATCAAAGAGTGGTGCTCTCTGAAGATGCAGTTGAGTTTGCAGAGGAACAAGGCCTTTTCTTCTCTGAGACTTCAG CTCTCACTGGTGAGAACGTGGAGAGTGCGTTTCTCAAGTTACTTCAAGAGATCAATACTAGAGTTGTCTCAAAAAGGTCT TTGTCAGATTGTAATCATGGGAAGAAGACCAATGGTGGCAATAGCCTTAAAGGATCCAAAATTGATGTAATCTCTGGTCC TGAATTGGAAATTACTGAAGTGAAGAAAGTACCTTCATGTTCTTGTTCATCTAGTTAAGAGAGCAGGGTGAGAAATTTAC ACACAGTATTTTTTTTTTCTTTTGAAAAGAATTGTGCTTAGTTTAGTTATCAATACGGGGATGATGATTTTGTCTGGTCC ATGTTGTCAATGCTCAAAATTGAAGAGCACTTCTTGCTTTAGTTTCATTATTATGACTTATTTACAACAATGAATTTGAT ATAATGTTTTCACCTATTCAATAAAATGGCTATTTAAATCACTCATGAATATTTACTTAACCTAAATCAAGTTTGATTCT TCACAAATTATATAATTTTATTTACCTAATGTGTCTAAATGATATAATACAAATTTGGGTTTGAATCATCTTAATATGCG GACCAATGATATTTATGATAAGTGATCGTCATTTGTCTTAAATATTATTAGTTCACCAATTAGAGTAATTTAATCCAAAC TTTACCTAATTTTTTTAAACAACTCCTTGCTTAATTAGTTGTAGCCTCAATACAATAGACATGTTGAAGAATTTTGGCTT AATTGCACATTTAGTCCACCAACTTTGCCCTTCCTGTGAAAATCATCCCCCAACTAAGAATTTAGCAAAAACCGTCCTTT TAGGGGATGATTTTCGCACGAAGACAACGGTGGGGTGTAAACTTTCGGGACGATTTTTACTAATTTCATAATTGGGGGAC GATTTTTGCAGGAAGGCAAAGTTGGGGGACCAAAT
CDS sequence (LotjaGi1g1v0795000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCAGGAAATGAATGGGGTTGAGGCTGAGAAGCTGCACCTGCAAGAGAAGAATGTGCATGATAAAATAGATTATGT GTTTAAGGTGGTGGTGATTGGGGACTCAGCTGTGGGCAAGACTCAAATACTCTCAAGGTTTGCAAAGAATGAATTCTGCT TTGATTCAAAAGCTACCATTGGGGTTGAGTTTCAGACCAGAACTGTCACAATTAATGCCAAAGTCATCAAAGCCCAGATC TGGGACACTGCTGGTCAAGAAAGGTACAGGGCTGTGACAAGTGCATACTACAGAGGAGCATTAGGAGCAATGCTGGTGTA TGACATAACAAAAAGACAGTCTTTTGATCATGTGGCTAGGTGGGTTGAGGAGCTGCGAGCACACGCAGACAGCTCCATTG TGATCATGCTAATTGGGAACAAAGGTGATCTTGTGGATCAAAGAGTGGTGCTCTCTGAAGATGCAGTTGAGTTTGCAGAG GAACAAGGCCTTTTCTTCTCTGAGACTTCAGCTCTCACTGGTGAGAACGTGGAGAGTGCGTTTCTCAAGTTACTTCAAGA GATCAATACTAGAGTTGTCTCAAAAAGGTCTTTGTCAGATTGTAATCATGGGAAGAAGACCAATGGTGGCAATAGCCTTA AAGGATCCAAAATTGATGTAATCTCTGGTCCTGAATTGGAAATTACTGAAGTGAAGAAAGTACCTTCATGTTCTTGTTCA TCTAGTTAA
Protein sequence (LotjaGi1g1v0795000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNQEMNGVEAEKLHLQEKNVHDKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKATIGVEFQTRTVTINAKVIKAQI WDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVARWVEELRAHADSSIVIMLIGNKGDLVDQRVVLSEDAVEFAE EQGLFFSETSALTGENVESAFLKLLQEINTRVVSKRSLSDCNHGKKTNGGNSLKGSKIDVISGPELEITEVKKVPSCSCS SS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 13 | 192 | 180 | 0.0076 | – | |
| PANTHER | 17 | 237 | 221 | 5.3E-111 | – | |
| PANTHER | 17 | 237 | 221 | 5.3E-111 | – | |
| Gene3D | 20 | 217 | 198 | 1.4E-63 | – | |
| ProSiteProfiles | 23 | 237 | 215 | 34.525 | – | |
| SUPERFAMILY | 24 | 193 | 170 | 1.97E-57 | ||
| SMART | 25 | 191 | 167 | 2.9E-25 | – | |
| CDD | 25 | 188 | 164 | 2.42109E-114 | – | |
| TIGRFAM | 27 | 181 | 155 | 4.2E-34 | ||
| PRINTS | 28 | 49 | 22 | 3.2E-38 | – | |
| SMART | 28 | 191 | 164 | 3.2E-99 | – | |
| Pfam | 29 | 189 | 161 | 2.7E-58 | ||
| SMART | 30 | 187 | 158 | 2.0E-11 | – | |
| SMART | 33 | 234 | 202 | 3.5E-7 | – | |
| PRINTS | 51 | 67 | 17 | 3.2E-38 | – | |
| PRINTS | 69 | 91 | 23 | 3.2E-38 | – | |
| PRINTS | 131 | 144 | 14 | 3.2E-38 | – | |
| PRINTS | 166 | 188 | 23 | 3.2E-38 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi1g1v0795000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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