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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0795800 |
| Transcript ID | LotjaGi1g1v0795800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rho GTPase-activating protein; TAIR: AT2G46710.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q8GYY5|RGAP3_ARATH Rho GTPase-activating protein 3; TrEMBL-Plants: tr|O82459|O82459_LOTJA Rac GTPase activating protein 2; Found in the gene: LotjaGi1g1v0795800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136659116..136664323) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAATTAAACGAAAATGAAGTCCTTAGATATGATTAAGATAGCTTTCATTTGTTCAACAGCGCAACCCTTGACATCAA ATGCTTCTTAGAGACATTGTCCATCTTAGCTTGATTATTGCAGCTGTGCTGAATGCTTCTCGCTGCCTAATCTTAATTTT ATCAAATCTCTTTTTTTTAAACAGCTTAATGGAACCATGAACATAGTACAAATACAAAAGACCGACCTGAAACAATCAAA CCTGCTCAAATAATCAAGAAACTCATTGAATGAATATTGTCTAAGAACATTCCAGTCTAGCTTATCTCCGGTCGGTTTCC TGAAGCAGCCCAAACCATACTGTTTCCTTTTATCATCTATTATGTTTCCCTTTATCAAATCTCATCAATCACCAAATTTA TTCAAATATAATGTTCAGACCCAATTAAATTGTTTCAAAAAAAAAGACCCAATTCTCCTCTGATATGAACTGAGGAACAG ATTTGGGTAAATTATTACCTCCATCAGATCTGGAACTGGTTTGTTGAGAGAATGAAGAACAAGCCAGATTCAAAAAGGGA ACCCAGAAATTGCCTCGGTGGTTGAGGAATAAATCTGGGTAAATATGGTTGAGCTCTGTGTGACTGGTGATTTAGAGGGT GTGAGTTCTAAGAGGATGAGAAAGAGACGATGGCGGCTCAAACGGTGGCTCTCGAGAGTCACGGCCGCAACTTGCTCCTC GACAAGAAGGTGCGGCGCGCGGCGAGATGCGGAGTGACGAGAACGTTGAAGCGTCACGATCTTCTTCACACTCCTCAAAT ATGGTTCAATCTCTTCGAGATCGCTATCTCCCTTCTCAATCGAGATGAGACGGCGGCGGGACGGCGGCTGAAGAATGAAG ATGAAGGAGATGAAGAATGAAGATGAAGAAGATGATAAGGGACCTAGGTGAATAATGAGAAAGATAATGGGTCATCTAAC ATATATATGATAATTTGGGGTCAAAATCATAAAGTATATTTTTTCATTAAAATAATACAGAAAAAACCCGGTCCATCCAC CAAAATCGGTTAAACCGGCTTGTGTAATGTTACACAAGAAAAATACTTGTGCATATTAGGGGGCTCCTAGAATTGGACAC TCACTCTTGGTCATTTTGTTTGTTACTCTCTACCAAAAACCACCACCAACAATTCATATAATACTAACAAACAAAAAGAA AAGCAACTTGTCTCCATCAATCTTACCAGCAGCATACCATCCCAATCCCATTGTTCATTCATCCTTCCTTCTTTGCTTCC TCTCACTCTCTTTCTCCATTGTATTTGTTCTTAAGCCTTAACCAAACCCATCTCAATTCTCCATTTGCCTTTAAAAGAAA TCCTTTTTAGTTTTAGTTATAGTTTCACTGCCCCATTTTTGTACTCTTTCAGTCTTTCTCCAATCCCACACATTCAGATC CTTTTTTTGACCCCATCCCATTATTGCTTTCTCGTTTATTTACAGCAATGACTCGCTTGTTTCGATCCAAATCTTGTGGA CTGGTGGAGTTCAACCCTTCTCCACCAAGTCCATTTTTCCACAACGTGAAGGATGAGGAAGATGATGAAGATGATGAAGA GGAAGAGGAAGAAGAAGAAGAATTGTACAATGATGATGAAGATGATTACTGGAGCAACCCTGTTTCAACACCACTCATCA ATCCTGCAGGTTCAAAAGACAAAGGTAATTGGCGTGGGCAGTCTCACAATCAGAACCAGAACCAGTTTGCAATACTGGAT ATTCTGGTGGCTGCTCTGAAGAAGTCACTGGTCACATGCAGTGTGGACAGGGAAGATGTTTCTTCCTTAGATATTAGCTG GCCAACGGAGGTTCGCCATGTCTCTCATGTTACCTTTGATAGGTTCAATGGCTTTCTCGGTTTACCTACTGAGCTTCAGC CAGAGGTTCCTCAGAAGGTGCCTAGTGCCAGGTGAAGTTTCTCTTGTGTTCTCTTCACCTAACCAATCTCACAGCTGTTA TTAACAGTTGAAGAAAAATAGGTAGTAGAACTAACACTAAAGGTTCAATTTTGTTGAATTTCGTTCAGAATTCAGATCAG AGTGTGTTGGTTTGTAATTTGCTTAGGATTAGATGCATTTGTTTTTTCAGTGCATTAATTAATAAGATTGTGATGAGCTA GGCAACCTAATGGCAGATGCATGAATGCTAAATGTTTGCAATTTTGCACCAAAAGATTTTGTGTTTATTAATTAGTTGGC TAAAAAGAAAACAATAGGAAGTTAATTCCTATCAAAGAAGAACATCTAAGACCTAATTAGGAAAGTTAGGAAACATTTCC TGAATAATCGATAGTGAAAAGGAAATACAAAATTTATCCTAACAGCCATCTTTCTAGAAATAAGGCTGGCCATACAAGTG TCCAAATTCTAAGAAACAGAGCATTCTAAAATGAAAATAAAAGGAATAACAAAAATAAATGGGCCTTGTAAACTGAATTG GCTTGCTACCACAGTTGTAATTGGATTTGCAAACTCAATACAAATTAGAAAGGTTCTTTGATTGGTCTTATGAATTTGTT GCCTCTATGTTCTACTGAGGAGGGAATTCATTTGCCTTTCCATCTATGTCCTACTCTCTTCCTCTATTTTGTTTTTAATC CACTTTTGACTGTGTTTTACAATCATGCAGTGCAAAGGTATTTGGAGTTTCAGCAAAGTCAATGCAGTGCTCTTATGATG AAAGGGGGAACAGTGTCCCAACCATTCTGCTGATGATGCAAAACCGATTGTATTCAGAGGGAGGCCTAAAAGTATGTTCT GTTATTATACTTGTCCAATAAAATTTATTTCACAACCTAACTTGAGTATTGTATAAATCCTCTTTACTTTCATATAACTT TTTAAGTCTAATTTCATGCTTGCGATCCCTGAAGGCAGAAGGAATATTCCGAATTAATGCTGATAATAGCCAAGAAGAGT TTGTTCGTTGTCAGTTAAACAGAGGTCTAGTGCCACGTGGAGTGGAGGTTCATTGTTTATCTGGTTTGATAAAGGTATAT ACTAAATTTATATTTAGCTTTTCTAGTTATTTTAGTATCCTGCACCGTAGTCAATCATGTTCAAGTCGGGAACATCACAT CTTCATAGGGCTTGCTCTCCTTGCCGGATTTTTTCTAAACACAAGACTCTGAACCCAAGTTTAATATGTATATTAGAGTT AATCGAAGCCTACTTTGATCATGGCTTAGCAGTTAGTACGAGATTGTTATTGTTCCTTCAAACAGTTGAAAAACCCTATC TTTGAAACTTATATGAAGTCTTTGACTTAAGTGTTTTATTTGTATAATATTTGGAAAGGAGGCTTGGCCATAGCTTTGGT TTCTGTATGTGTTTTGCAAAGATGAATGTGAACAAACAATAGTTTCATTTATCAATGGTTGATTATCTAGTTTGGGTTGG TAAGGTCTGGCACTTACAAGGAAATCTACTTTAGATGGGTTAAGAGAAACTGTTCATGCAATATGTTGTTCATTGGTGTG CATTATTAAGGGATTCTTTCTTATAAACAACTCATTGCCTGCATTGATGAAAGTCTCTGATTGATTGTGTCGTCAGGCAA TGTGGTATTCAAGAATTACTTTAGTTAGTGTTACTAATGTTGATTATCCCATTTCTATGTTTCTATGCTTGGCAGGCTTG GTTTAGAGAGCTTCCAACTGGGGTACTTGATTCTCTCACCCCAGAACAAGTGATGCACTGCAACTCAGAAGAGGATTGTA CTAATCTTGTGAAGTTACTCCCTTCAACTGAAGCTGCACTACTTGACTGGGCAATCAATTTGATGGCAGATGTTGTTGAG CATGAACAGTTCAACAAAATGAATGCACGCAATATTGCTATGGTTTTCGCCCCCAACATGACACAGGTCAGTCATACATT ATAAGAAAAGATGTATGGTTCTGTTATTTTTGTTGTCTCTTCTCTTGTTGGTTTCGCCGAACACATTTTAATTAGACTCA TTCCGTGGAGCAACCTGATTTCATATTTTCAATATATTCATTAGTTCAATATGTTTGAACTTTGAACCATTTTGCCACCC AAGTAAACTCAATTGCAATGGTCATTTTGAAGGTGCAAAGAAAGATAAAATCAAGTTGTTTTCATAAATCTGAAATTGAT AGAATTAGGAATTGAAGTTTACAGTAGCAAATGGATTCATGGTGTAGTGATGCATAATCACCAGCAATGCTAAATCCAAG ATGGGCTAACCTGTTAGGCTATTTCTGGATATCCCTTAGCACACACTTTAAGACAAAAAGTGAACAAATCTCTTCTTATG GATTGAGATGAACTGGACTCAAATTTCTGGTATGTGCTTCTTATTTATTCTAGAGCATATATAAACACTAATTTTCTTGT GCTATGCAGATGGTCGACCCTTTGACTGCATTGATTCACGCGGTGCAAGTCATGAACTTCCTTAAGACGTTGATTCTGAA GACCCTTCGAGAAAGAGATGAATCAATGGCGAAAGCGAGACAGCTTTCATCACTCTTAAATTCTCCCTCCTGCAAAGGTG ATTCCCATCCTTTCAAAGATAACAGGGAGGAATCTAGTGCACAACCAGTGGATACTTGTGCAACAATGCCACCTGACAAA AGCGAGTTCTCAAGAATGGAATGGTGTGTTGATGAGAAGGTTTGGAGCTCTGAGGAAAAAGGAACCGGAGGCGGCGCATT GGAATCTGTTTCAGGTGGTAGCTCACCTTCTAGATATGAGAGTGGTCCTTTAGAAAGTAGATATAGAGGTATATATGACA GTGAACATTGGCTGAGATTGAGAAAAGGAGTGCGCAGGCTATGCCAACACCCTGTGTTTCAACTGAGCAAGTCTACTAAG AAGCGTGCAGACCTTGGCATTGTAAATACTAGAGAAGGAGGAGGAGAGGCTTGGGCCTAAAGTAGCTGTTATATGCTCTG GTTTTATAGTTTGTGTGATTGAGATGTATAGATCATGTTTGAGTGATATTGTATGTAGCATAGCCTCAGGTGTAACTGCT GCTTTTGGTGTCTATGTAGAATGAAAGTTCAATAGATGTTTAGAAACGTGTTGAATATCTGATTTAACAAGAATTTCTTA GTAATCATAGCAGTATTATCTCAATAATCATGTGTTTAGGTGAAAGGACGCAAAATTTCTTAATAATCATGTGTTTCATT TAAACTTC
CDS sequence (LotjaGi1g1v0795800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCGCTTGTTTCGATCCAAATCTTGTGGACTGGTGGAGTTCAACCCTTCTCCACCAAGTCCATTTTTCCACAACGT GAAGGATGAGGAAGATGATGAAGATGATGAAGAGGAAGAGGAAGAAGAAGAAGAATTGTACAATGATGATGAAGATGATT ACTGGAGCAACCCTGTTTCAACACCACTCATCAATCCTGCAGGTTCAAAAGACAAAGGTAATTGGCGTGGGCAGTCTCAC AATCAGAACCAGAACCAGTTTGCAATACTGGATATTCTGGTGGCTGCTCTGAAGAAGTCACTGGTCACATGCAGTGTGGA CAGGGAAGATGTTTCTTCCTTAGATATTAGCTGGCCAACGGAGGTTCGCCATGTCTCTCATGTTACCTTTGATAGGTTCA ATGGCTTTCTCGGTTTACCTACTGAGCTTCAGCCAGAGGTTCCTCAGAAGGTGCCTAGTGCCAGTGCAAAGGTATTTGGA GTTTCAGCAAAGTCAATGCAGTGCTCTTATGATGAAAGGGGGAACAGTGTCCCAACCATTCTGCTGATGATGCAAAACCG ATTGTATTCAGAGGGAGGCCTAAAAGCAGAAGGAATATTCCGAATTAATGCTGATAATAGCCAAGAAGAGTTTGTTCGTT GTCAGTTAAACAGAGGTCTAGTGCCACGTGGAGTGGAGGTTCATTGTTTATCTGGTTTGATAAAGGCTTGGTTTAGAGAG CTTCCAACTGGGGTACTTGATTCTCTCACCCCAGAACAAGTGATGCACTGCAACTCAGAAGAGGATTGTACTAATCTTGT GAAGTTACTCCCTTCAACTGAAGCTGCACTACTTGACTGGGCAATCAATTTGATGGCAGATGTTGTTGAGCATGAACAGT TCAACAAAATGAATGCACGCAATATTGCTATGGTTTTCGCCCCCAACATGACACAGATGGTCGACCCTTTGACTGCATTG ATTCACGCGGTGCAAGTCATGAACTTCCTTAAGACGTTGATTCTGAAGACCCTTCGAGAAAGAGATGAATCAATGGCGAA AGCGAGACAGCTTTCATCACTCTTAAATTCTCCCTCCTGCAAAGGTGATTCCCATCCTTTCAAAGATAACAGGGAGGAAT CTAGTGCACAACCAGTGGATACTTGTGCAACAATGCCACCTGACAAAAGCGAGTTCTCAAGAATGGAATGGTGTGTTGAT GAGAAGGTTTGGAGCTCTGAGGAAAAAGGAACCGGAGGCGGCGCATTGGAATCTGTTTCAGGTGGTAGCTCACCTTCTAG ATATGAGAGTGGTCCTTTAGAAAGTAGATATAGAGGTATATATGACAGTGAACATTGGCTGAGATTGAGAAAAGGAGTGC GCAGGCTATGCCAACACCCTGTGTTTCAACTGAGCAAGTCTACTAAGAAGCGTGCAGACCTTGGCATTGTAAATACTAGA GAAGGAGGAGGAGAGGCTTGGGCCTAA
Protein sequence (LotjaGi1g1v0795800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRLFRSKSCGLVEFNPSPPSPFFHNVKDEEDDEDDEEEEEEEEELYNDDEDDYWSNPVSTPLINPAGSKDKGNWRGQSH NQNQNQFAILDILVAALKKSLVTCSVDREDVSSLDISWPTEVRHVSHVTFDRFNGFLGLPTELQPEVPQKVPSASAKVFG VSAKSMQCSYDERGNSVPTILLMMQNRLYSEGGLKAEGIFRINADNSQEEFVRCQLNRGLVPRGVEVHCLSGLIKAWFRE LPTGVLDSLTPEQVMHCNSEEDCTNLVKLLPSTEAALLDWAINLMADVVEHEQFNKMNARNIAMVFAPNMTQMVDPLTAL IHAVQVMNFLKTLILKTLRERDESMAKARQLSSLLNSPSCKGDSHPFKDNREESSAQPVDTCATMPPDKSEFSRMEWCVD EKVWSSEEKGTGGGALESVSGGSSPSRYESGPLESRYRGIYDSEHWLRLRKGVRRLCQHPVFQLSKSTKKRADLGIVNTR EGGGEAWA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 487 | 487 | 5.3E-219 | – | |
| PANTHER | 1 | 487 | 487 | 5.3E-219 | – | |
| MobiDBLite | 1 | 80 | 80 | - | – | |
| MobiDBLite | 29 | 52 | 24 | - | – | |
| Gene3D | 112 | 143 | 32 | 6.5E-7 | ||
| CDD | 115 | 154 | 40 | 1.32479E-6 | – | |
| Pfam | 115 | 144 | 30 | 7.3E-5 | ||
| SMART | 116 | 150 | 35 | 3.3E-7 | ||
| Gene3D | 144 | 341 | 198 | 3.2E-33 | ||
| SUPERFAMILY | 156 | 335 | 180 | 8.83E-37 | ||
| ProSiteProfiles | 164 | 346 | 183 | 25.128 | ||
| SMART | 175 | 338 | 164 | 3.4E-29 | ||
| CDD | 178 | 334 | 157 | 1.31677E-31 | – | |
| Pfam | 178 | 312 | 135 | 1.2E-19 | ||
| MobiDBLite | 349 | 388 | 40 | - | – | |
| MobiDBLite | 406 | 433 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi1g1v0795800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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