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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0796100 |
| Transcript ID | LotjaGi1g1v0796100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT4G00830.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q; TrEMBL-Plants: tr|I1NCQ2|I1NCQ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0796100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136687321..136692943) extracted from Lotus japonicus Gifu genome v1.2.
CGCGGAAGAGAATGATTGGTGTGGGGAGTGTGAGTGCAAGTAAAAACGACCGCTTCATAGTATTGTCGATTAGGCGCATC TGGAAAAAGGAGGCACTCACTTCCCCTTTTGTTGCCGGATAAACTCTCTCTCTCTCTCTCTTCACCGGGGAGGAAGAAGA AGAAGAAGAATCACACTCTCTCTCTCTCTCTCTCTCTCACAGAAGCAAATCTGAAAAACCCTAATTTCATTACACTGGTA CGCACGCTCCCTTTTTGTTTTCCATGAATAAATATGCCTCCCTATCCCTTTGTCTTTCACTTCACTTCTTCTTCGGATCA AATTCTCATAATACATTACCCTCCTCATATACCAGCCAAAGATCTTTCATTTCCTTTTCGTATGGTATGTCGCGTTACTC CGCTCATTCATTTTCACAGGGTTTAACTCTATACTTGAAGGGTTTGTCTTTCTGTTATTTTTTTTTATCTTCTCATATAG TTTCAATTGTTTCCTCTTATTTGTTTGTTGACATTCCTCTGTTAAGCATTGGATTGGCCTAATGTCTTTAATCATATGCC TATTGCCTAGTTTTATTGTCTCTTTGCTGAATTTTGCCCTAGTCTGGGTATTGCTTTAGGGTATCAATTCAGCTACCGAA TGGCCAATGGGGTAGATTAGGGATGTTGCTCGGTTCTCTTTCAAAACCATATCTGTCTATTGCCTCCATGTCTTAGTGTT CCACCCAGATTTTGTGATTAGTGTGTGAACCTGCAGGTGTTCAGCTGTTTATGAGAAAATCTTGACCCAATCATGTCAGA AGGTGCAGAAATTGATGAGCGTGTCGACCTTGATGAGGAAAACTATATGGAGGAGATGGATGATGATGTCGAAGAACAAG TAGATGATGATGGAGTGGATGGAGATGGAGCTGAAGATGAAAATGCTGAAGGTAGTGTTGAAGAACATGAATATGAAGAG TTGGCAGCGGAGGCTGATGGGAAAGACCAATTGGCTGAAGCAGAAAAGGGTGACATTGACACTGAATTTGTGGAGGAAGA TGGGGAAAAGCCACCTCTCATTGATGAAGATGAGAAACAAAAGCATGATGAACTTCTTGCCCTTCCTCCTCATGGTTCTG AAGTCTTTATTGGTGGACTTCCTCGGGATGCATGTGAAGATGATTTAAGGGAATTGTGCGAACCAATGGGTGATATTCTT GAGGTTAGAGTCTTGAAAAGTTACTCCTGTGATATTATAAACCTTTATTTTTCATCGGATGGGAAAATTTTGGTTTATTT ATAAAACTTTAATTTGTTATTACTTTTCAGGTGCGATTGATGAAAGATAGGGACACTGGGGACAACAAGGGTTATGCTTT TGTGGCTTTCAAAACAAAAGAGGAGGCACAAAAGGCTATTGAAGACATACATAACAAAGAATTTAAGGTACTCATAAAGT CGTGATGCTTTCTGAAAATCTTATTCACTATAGCTTGAAGACAAATTTATTTCAAAATTCTTATTTTGGTGATCAGTTTT AGATATTAACAACTTTTTACATGACATCAGGGAAAAACTTTGAGGTGTTCACTGTCTGAAACCAAACACAGATTGTTCAT CGGTAATGTTCCAAAAACAGTGACAGAGGATGAGTTTAGGAAAGCCGTCGATGGTGTTGGTCCAGGAGTTGAAAGCATCG AGCTCATAAAGGTTCAGGCTTGACTTGAACTAAATTTGTTACTAGCTTATATTAAAATGTTATAAGGCCTACCTTTATTT CCAATCCATTTTTGTTCATTACAGGACCCTCAAAATCCAAGCAAGAATCGTGGGTTTGCTTTTGTTTTGTATTACAATAA TGCATGTGCTGATTATTCACGGCAAAAGATGTCAAGTTCGAGTTTTAAGCTATATGGAAATACACCAACTGTCACATGGG CAGATCCAAAGAATTCACCTGACCATTCTGCTTCTTCACAGGTAATTTCTTGGATGAAAAGGGAGCTTAGAGGTTAAGAG TGATTTTCAGTTGTTTTTCATACAATTGTATCAAGTGTTTGATTGGACATTTATAGGTGATCATCTGTGCTTCCCTTTTA CTGCTTTTTCCTGCATTCCCCCTCTCTCCTCTTTCTCTCTCAGCTGAGCCCACCTAGTAAAGAGGAAAATCATACTCATA CCAAAGAGTTTGTAATCCTGAGGCGGTGTTTGGAGTAAGAAATGTTTTGACAATTTGGGGATTGTTCAGTGGAAAAGTTT TCCATATTTGGTACAAGAGATAAATAATGTTTCTCAGACACAAGGGATTTCTGGGAATGTAAATTTTTGTGTGAAATTTA AGAATATGATTTCCACCTTCACAGTTGGGAATAGGAAAATTATAGATTGTAAAGTTATTAGATTACCCTTGTTCATTGAC AAACTTATAAATTGTAAAATTATATGATTTCCACCTTCATAGTTGTCTGATCTTTGTCACAATCAGCTTTTTGACACCAC CAGCTATGCACTGCCCATCTGTGCTTCTTCCGCAGCCACTATATGTGCCCGTTTATCTGACCAGTTGTGCTTCCAAACTC ACCCCACCCCACTACTTCCATCTCCTCCTTCACAGTGCTCATGGCTACTGTTAGCTGACTTGGTCTGCTTGCCTTGAAAC TCTTCTTCTTTGCTGAATGCCTCCATATGTTAGGAACCCAATTGCAAGGTAAGGACTTGAGTCCCACATTGGAAGTATAG GATTCTAAAGTGGGGTTTACAAGGCCTTGGGCTCTCCAACTACAAGAACTAGCTTTTGTGGTGTGGTTCTTCCAAGGTTT TTATCACCATCTATCATTGTTTGCTATTAGATCATCATACATTTAGATTACTGTTTCTATCCCTACGCTATCTTCTCACA ATTTGTCGCCTTAGTCATTGACTCACCCAAGATCTACAAGCTGTTCTTTGGGTAATTTGATATTTTCTCAGTACTATTTC CTTCTCAATATCACCTAGTAGGTCTCGACCAGTGGCCGTCATGGCGCTGTCTGACTGATTTTTAGTGGAAAGGACAATAA TCCAAAAATTCCCTCCAGAAGTTAATGTTAAAACATTTTAGGTGTAATTTTGGGAGTTGTCTTAAAAATAAGTTGAAAAA GGTTCTTGTTGAGTTGTTTCAGTAAACCCTCACTCACCGCGCCTTTTCTCCTTGCTCTATCTGACACATGCCCCTTGAGC GACCCTTCGATGACTTCTGCAGCTACCACTCGTGCGGCCCATCTCTTTTTACTTCAGTTCTCTTTCCTCTAGCAGCTTCA TGTTGTGTTCTTTTCCCCCTTTTCCTTTGATTTGTTGATTCTTTGCTAATTTATTTTCTCTTGTCTTGTACTTTGAGCTT TTCTTCTCTTTTCATCATCGTGTCTCAGGCTTTAGTTATTTATTCTTCTCTTTTTTTATCATTTATATTTATATAGTAGA AATTATGTAAACTTCAAAAAAAAATCAGCATAGCGGTCATGCCACTATGCACTACAATGTTATAGCTTTTTTGGGATCGA CCACTACACTGCCGTTGGAAATGATAACACTGATCACCTCCCAACTAACCAAACTATCTCGCTAACCGTCACTATCAAAG TCCTAACACTAATAGATACCTAAGATTTTATTGGTGACATTATTATAAATAAGACTGCTATGGAATGCTGACTTTGTTTA AGAAAAGGGTTAGTCTTGATAGTTGTTTAACACATCAAAGATGTTAATATGTGGCATTTATATTAACATATATTTTTGGT GTTTTGTGTATGAAAAATAATAAATTCAAGTTTTGCCTTCAAAATTTGTTTTTGCAATTTTCAGGTTAAAGCTCTATATG TGAAAAACATACCAGAGAATGTCACTACTGATCAACTGAAGGAACTATTCCGTCGTCATGGGGAAGTAACAAAAGTGGTC ATGCCACCAGGCAAAATTGGTGGGAAACGGGATTTTGGTTTCATTCATTTTGCTGAGAGGTCAAGTGCATTGAAAGCAGT AAAAGAAACAGAGAAATATGAAATTGATGGTACTTGTTTTATGCAATATGAAGTTATAAACCTGTTTTCACCCTACGAAT TTGTCTGTCCTTTTCTTTTCAGTTAACTTTGCAAAAAATAACAAAAAGAGTGAAACCAACTTATCTAAGTCACTCGTCTT ATCCATTAAAAATGTTCTTTTGTTTGTAATACTATTCATTATGTGTGTTACTTAAATATGTTAAATAATTTTGGACTGCA GGCCAAGTGCTTGAAGTTGTTCTTGCTAAGCCTCAAGCTGAAAAGAGACCTGATGCTTATGCCTTCAATCCTGGAGTTCA CCCAAACCATCTTCCACATGCTGGTTACGGTAGCTATTCTGGAAATCCTTATGGCTCTTTAGGGACTGGCTACGGGGCTG CTCCTGCTTATCAACAGGTATTTAGTGACTTACTGACTTAGAGGATATTCATAATTGATGTGTTTGATTCTTGATTTATT ATTTGTTCTAATCTTCTTGCATTTTTTGTGTTCCTGTGTACTTTCGAACAGCCAATGATATATGGCAGAGGTCCAATGCC AGCAGGAATGCAGATGGTTCCCATGGTATTGCCAGATGGTCGAATCGGCTATGTCCTGTAAGTATTTACAACTCTTGTAC ATGATTACATGTCCTTATATTATATCCGATGTAATACCTTCATTTTGGGGTCTTCTGCAGTCAACAGCCTGGTGTACAGG TTCCTGCTGCCCGACCTCGCAGAAATGAACGTAGCAATGGTCCAAGTGGTCAAGCTGGGCGAGGTGGCGGCGGCGGTAAC GATGAAGGCAATCGTAGCAGAAGGTTTCGACCTTATTAGTGGTAGAAAGCAGATAAATGCAATGTGGCTCGTGTCACCTT GCTGTCTTCTTGGTGGTGTGGGGCTTTGGGGACAAGATACGTTACAGAAAATCCTTTCTCAATCTCTATCCCACAAAAAA AGGGGGGAAAATATTTAAAAAATATATGAAGAGAATGTTAGGATTAGGACCAATGATATTATGCTGTTAAGTTAATGTTG GAATTTACTGCTGTTAGATGAGTCACACCCGAGTAATTGCCCATCTTTTCTGCTTGGAATGCTTTTTGGTACATTTTTAT CGACAACCTTTAGAACATTATGTTAATTTGGTTTCAGTAAATTTACCATGTTTTTGTCGCTCCATTTTAAATGCACCACT CAGTGGCTCTTACCTGTTTGTGGCAGCACCCTAAATCATTTTTCTGAGCTTTACTAGATTAGCAATTTGGCTGAAACTAA CTCTGCCATTGATATGTGAAACAGTGATCAACTGAGCAAATGAGAGTTAAAATGGGATAGGTATTTTGCATGTGAATCTC GCACGGTGAGGTTTAGGTTTTAAGCAACATTAATCCCAGCAGAGTTTAAGAATTATCCGCAGATAAAATACTAAAACCGC ATTACTGCAACCCAATCTTCTCGAAGTTTGCATTTCAGCCTTAGGTGACAAAACAATTGAACCGGGTAGAAAACATTGTT CATTTATGGGGTTAAGAACTGAAAACAATTTTTTTAGGATTGCTCGATTTCTCTCATGTTGATGTCCCCTCATACTTTGC TCCTGAATTGATCAAATGAAGGA
CDS sequence (LotjaGi1g1v0796100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGAAGGTGCAGAAATTGATGAGCGTGTCGACCTTGATGAGGAAAACTATATGGAGGAGATGGATGATGATGTCGA AGAACAAGTAGATGATGATGGAGTGGATGGAGATGGAGCTGAAGATGAAAATGCTGAAGGTAGTGTTGAAGAACATGAAT ATGAAGAGTTGGCAGCGGAGGCTGATGGGAAAGACCAATTGGCTGAAGCAGAAAAGGGTGACATTGACACTGAATTTGTG GAGGAAGATGGGGAAAAGCCACCTCTCATTGATGAAGATGAGAAACAAAAGCATGATGAACTTCTTGCCCTTCCTCCTCA TGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATGCATGTGAAGATGATTTAAGGGAATTGTGCGAACCAATGGGTG ATATTCTTGAGGTGCGATTGATGAAAGATAGGGACACTGGGGACAACAAGGGTTATGCTTTTGTGGCTTTCAAAACAAAA GAGGAGGCACAAAAGGCTATTGAAGACATACATAACAAAGAATTTAAGGGAAAAACTTTGAGGTGTTCACTGTCTGAAAC CAAACACAGATTGTTCATCGGTAATGTTCCAAAAACAGTGACAGAGGATGAGTTTAGGAAAGCCGTCGATGGTGTTGGTC CAGGAGTTGAAAGCATCGAGCTCATAAAGGACCCTCAAAATCCAAGCAAGAATCGTGGGTTTGCTTTTGTTTTGTATTAC AATAATGCATGTGCTGATTATTCACGGCAAAAGATGTCAAGTTCGAGTTTTAAGCTATATGGAAATACACCAACTGTCAC ATGGGCAGATCCAAAGAATTCACCTGACCATTCTGCTTCTTCACAGGTTAAAGCTCTATATGTGAAAAACATACCAGAGA ATGTCACTACTGATCAACTGAAGGAACTATTCCGTCGTCATGGGGAAGTAACAAAAGTGGTCATGCCACCAGGCAAAATT GGTGGGAAACGGGATTTTGGTTTCATTCATTTTGCTGAGAGGTCAAGTGCATTGAAAGCAGTAAAAGAAACAGAGAAATA TGAAATTGATGGCCAAGTGCTTGAAGTTGTTCTTGCTAAGCCTCAAGCTGAAAAGAGACCTGATGCTTATGCCTTCAATC CTGGAGTTCACCCAAACCATCTTCCACATGCTGGTTACGGTAGCTATTCTGGAAATCCTTATGGCTCTTTAGGGACTGGC TACGGGGCTGCTCCTGCTTATCAACAGCCAATGATATATGGCAGAGGTCCAATGCCAGCAGGAATGCAGATGGTTCCCAT GGTATTGCCAGATGGTCGAATCGGCTATGTCCTTCAACAGCCTGGTGTACAGGTTCCTGCTGCCCGACCTCGCAGAAATG AACGTAGCAATGGTCCAAGTGGTCAAGCTGGGCGAGGTGGCGGCGGCGGTAACGATGAAGGCAATCGTAGCAGAAGGTTT CGACCTTATTAG
Protein sequence (LotjaGi1g1v0796100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSEGAEIDERVDLDEENYMEEMDDDVEEQVDDDGVDGDGAEDENAEGSVEEHEYEELAAEADGKDQLAEAEKGDIDTEFV EEDGEKPPLIDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTK EEAQKAIEDIHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYY NNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKI GGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAFNPGVHPNHLPHAGYGSYSGNPYGSLGTG YGAAPAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPAARPRRNERSNGPSGQAGRGGGGGNDEGNRSRRF RPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 91 | 91 | - | – | |
| PANTHER | 5 | 467 | 463 | 4.5E-211 | – | |
| PANTHER | 5 | 467 | 463 | 4.5E-211 | – | |
| MobiDBLite | 8 | 50 | 43 | - | – | |
| Gene3D | 8 | 189 | 182 | 4.2E-30 | ||
| MobiDBLite | 51 | 74 | 24 | - | – | |
| SUPERFAMILY | 106 | 274 | 169 | 2.57E-39 | ||
| ProSiteProfiles | 109 | 187 | 79 | 19.894 | ||
| SMART | 110 | 183 | 74 | 9.9E-25 | ||
| SMART | 110 | 183 | 74 | 1.1E-5 | ||
| CDD | 111 | 183 | 73 | 3.8529E-23 | – | |
| Pfam | 111 | 181 | 71 | 2.2E-22 | ||
| ProSiteProfiles | 189 | 271 | 83 | 12.322 | ||
| Gene3D | 190 | 270 | 81 | 8.0E-19 | ||
| SMART | 190 | 267 | 78 | 4.6E-11 | ||
| Pfam | 191 | 257 | 67 | 6.3E-9 | ||
| Gene3D | 271 | 369 | 99 | 1.1E-20 | ||
| SUPERFAMILY | 276 | 388 | 113 | 1.88E-23 | ||
| CDD | 283 | 361 | 79 | 1.45169E-31 | – | |
| ProSiteProfiles | 284 | 361 | 78 | 16.295 | ||
| SMART | 285 | 357 | 73 | 1.4E-19 | ||
| Pfam | 286 | 354 | 69 | 2.9E-15 | ||
| MobiDBLite | 441 | 483 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0796100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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